Wall clock time and date at job start Tue Mar 31 2020 08:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00422 * 2 1 4 4 H 1.48497 * 109.47111 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.47256 * 149.99963 * 3 2 1 6 6 H 1.48500 * 109.46723 * 29.99454 * 3 2 1 7 7 C 1.37884 * 119.99816 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84815 * 180.28562 * 7 2 1 9 9 C 1.53671 * 108.30710 * 231.38065 * 8 7 2 10 10 C 1.52956 * 109.32297 * 305.14007 * 9 8 7 11 11 H 1.09002 * 109.41295 * 303.62112 * 10 9 8 12 12 N 1.46502 * 109.35127 * 183.79951 * 10 9 8 13 13 C 1.34775 * 119.99987 * 84.68489 * 12 10 9 14 14 O 1.21281 * 120.00376 * 355.05954 * 13 12 10 15 15 C 1.50705 * 119.99885 * 175.06005 * 13 12 10 16 16 C 1.50704 * 115.54986 * 65.74322 * 15 13 12 17 17 O 1.20761 * 119.99800 * 245.68864 * 16 15 13 18 18 C 1.50693 * 119.99887 * 65.68650 * 16 15 13 19 19 C 1.53001 * 117.50064 * 222.71474 * 18 16 15 20 20 C 1.53007 * 117.49580 * 154.05489 * 18 16 15 21 21 C 1.52997 * 117.49989 * 280.07225 * 15 13 12 22 22 C 1.52997 * 117.49634 * 211.41211 * 15 13 12 23 23 C 1.52963 * 109.81883 * 63.72670 * 10 9 8 24 24 C 1.51263 * 120.84902 * 0.02562 * 7 2 1 25 25 H 0.96999 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.62629 * 351.03491 * 8 7 2 27 27 H 1.08992 * 109.63003 * 111.61175 * 8 7 2 28 28 H 1.08998 * 109.41180 * 185.24537 * 9 8 7 29 29 H 1.09006 * 109.62444 * 65.15735 * 9 8 7 30 30 H 0.97002 * 119.99723 * 264.67146 * 12 10 9 31 31 H 1.08998 * 115.55573 * 8.38878 * 18 16 15 32 32 H 1.09006 * 117.49499 * 359.97438 * 19 18 16 33 33 H 1.08997 * 117.50326 * 145.01961 * 19 18 16 34 34 H 1.09000 * 117.49640 * 214.97817 * 20 18 16 35 35 H 1.08997 * 117.49554 * 359.97438 * 20 18 16 36 36 H 1.09007 * 117.50098 * 359.97438 * 21 15 13 37 37 H 1.08996 * 117.50272 * 145.02181 * 21 15 13 38 38 H 1.09004 * 117.49844 * 214.97750 * 22 15 13 39 39 H 1.08997 * 117.50438 * 359.97438 * 22 15 13 40 40 H 1.09004 * 109.48037 * 176.42032 * 23 10 9 41 41 H 1.09004 * 109.49011 * 56.39151 * 23 10 9 42 42 H 1.09003 * 109.62828 * 248.38701 * 24 7 2 43 43 H 1.09002 * 109.62879 * 8.96426 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 3.5467 1.4400 0.7000 6 1 1.4466 2.6526 0.6999 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0070 9 6 3.9911 -2.1319 -1.1327 10 6 3.3401 -3.5077 -0.9809 11 1 3.5738 -3.9124 0.0039 12 7 3.8607 -4.4075 -2.0132 13 6 5.0182 -5.0676 -1.8105 14 8 5.6742 -4.8496 -0.8140 15 6 5.4973 -6.0767 -2.8221 16 6 5.8673 -5.5183 -4.1721 17 8 5.2203 -5.8171 -5.1470 18 6 7.0445 -4.5870 -4.3054 19 6 6.8757 -3.3588 -5.2019 20 6 7.7490 -4.5287 -5.6623 21 6 4.8675 -7.4704 -2.7826 22 6 6.3071 -7.2668 -2.3038 23 6 1.8232 -3.3833 -1.1327 24 6 1.2676 -2.5151 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 3.8988 -0.2076 -0.1493 27 1 3.8734 -1.6020 0.9622 28 1 5.0751 -2.2355 -1.0870 29 1 3.7070 -1.6991 -2.0920 30 1 3.3722 -4.5284 -2.8425 31 1 7.6610 -4.4779 -3.4132 32 1 5.9132 -3.2246 -5.6957 33 1 7.3814 -2.4417 -4.8998 34 1 8.8289 -4.3807 -5.6627 35 1 7.3612 -5.1642 -6.4584 36 1 4.1068 -7.6578 -2.0246 37 1 4.7211 -7.9837 -3.7329 38 1 7.1072 -7.6462 -2.9394 39 1 6.4937 -7.3198 -1.2312 40 1 1.3708 -4.3740 -1.0871 41 1 1.5903 -2.9212 -2.0921 42 1 1.4191 -3.0189 0.9552 43 1 0.2036 -2.3409 -0.1599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187653429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:35 Heat of formation + Delta-G solvation = -54.546764 kcal Electronic energy + Delta-G solvation = -23771.799640 eV Core-core repulsion = 20396.278354 eV Total energy + Delta-G solvation = -3375.521286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86610 -40.48897 -38.66398 -37.40943 -36.76859 -35.41750 -33.40513 -31.50458 -29.39615 -27.85047 -25.12572 -23.62695 -23.43725 -23.38911 -23.24142 -21.83550 -21.31624 -20.08723 -18.81912 -18.00167 -17.25442 -17.02740 -16.79804 -16.40974 -15.94042 -15.77675 -15.40274 -15.00734 -14.89316 -14.51881 -14.45909 -14.11157 -13.96638 -13.75932 -13.52384 -12.81813 -12.70890 -12.65388 -12.55507 -12.51105 -12.26755 -11.94107 -11.85531 -11.77261 -11.57296 -11.55309 -11.49362 -11.11904 -10.87341 -10.76779 -10.59999 -10.53595 -9.97507 -8.18546 -6.12655 0.53362 1.37094 1.41045 1.43122 1.49618 2.02045 2.40041 2.40850 2.76922 2.87533 3.09992 3.56400 3.67922 3.72206 3.76049 3.93074 3.97977 4.01424 4.16117 4.17590 4.44639 4.58326 4.62829 4.66297 4.68190 4.80007 4.83790 4.88583 4.92776 4.95776 5.04166 5.07285 5.09333 5.13214 5.19056 5.20923 5.52880 5.53509 5.64193 5.73946 5.79512 6.23719 6.33058 6.50201 6.92779 7.13056 7.45613 8.92177 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.004327 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.081657 B = 6469.271887 C = 7148.435346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.257 1.257 6 H -0.291 1.291 7 C -0.500 4.500 8 C -0.015 4.015 9 C -0.105 4.105 10 C 0.168 3.832 11 H 0.061 0.939 12 N -0.709 5.709 13 C 0.558 3.442 14 O -0.564 6.564 15 C -0.235 4.235 16 C 0.437 3.563 17 O -0.463 6.463 18 C -0.235 4.235 19 C -0.153 4.153 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.102 4.102 24 C 0.009 3.991 25 H 0.264 0.736 26 H 0.033 0.967 27 H 0.015 0.985 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.406 0.594 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.000 1.000 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.369 -12.620 -10.545 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.182 1.182 6 H -0.218 1.218 7 C -0.520 4.520 8 C -0.053 4.053 9 C -0.144 4.144 10 C 0.064 3.936 11 H 0.080 0.920 12 N -0.359 5.359 13 C 0.344 3.656 14 O -0.443 6.443 15 C -0.239 4.239 16 C 0.313 3.687 17 O -0.337 6.337 18 C -0.254 4.254 19 C -0.190 4.190 20 C -0.166 4.166 21 C -0.166 4.166 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.029 4.029 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.241 0.759 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.306 -12.517 -10.344 21.641 hybrid contribution -0.421 1.194 0.109 1.271 sum 13.885 -11.323 -10.235 20.634 Atomic orbital electron populations 1.69949 1.07538 1.27535 1.51766 1.25558 0.95333 1.01631 0.94758 0.85842 0.79176 0.79809 0.78716 1.19730 1.18197 1.21751 1.20592 0.90854 0.91985 1.48531 1.19798 0.94995 0.95843 0.94651 1.21853 0.97653 0.95302 0.99633 1.20708 0.93817 0.88891 0.90205 0.92043 1.46193 1.23664 1.44790 1.21211 1.19322 0.80474 0.80239 0.85585 1.90690 1.56209 1.66322 1.31038 1.21882 1.13122 0.92234 0.96629 1.22695 0.82336 0.77098 0.86524 1.90385 1.49984 1.52774 1.40586 1.22786 1.01170 1.02524 0.98893 1.23068 1.02694 0.92655 1.00583 1.23093 1.00168 1.00297 0.93075 1.23209 0.97295 0.91266 1.04780 1.23163 0.95416 0.92816 1.03324 1.21708 0.92844 0.98994 1.00457 1.19284 0.97308 0.93358 0.92911 0.92716 0.94857 0.96653 0.93798 0.92872 0.75854 0.85213 0.88990 0.86348 0.85247 0.88051 0.87169 0.86019 0.85193 0.87193 0.92268 0.92808 0.98202 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.93 12.73 21.45 0.27 -53.66 16 2 C 0.03 1.41 5.46 84.66 0.46 1.87 16 3 Si 0.94 43.19 27.28 68.60 1.87 45.06 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.26 -11.36 6.45 99.48 0.64 -10.72 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.50 -26.24 5.51 -16.17 -0.09 -26.33 16 8 C -0.01 -0.69 5.62 30.26 0.17 -0.52 16 9 C -0.11 -4.30 5.51 30.81 0.17 -4.13 16 10 C 0.17 6.38 2.31 44.96 0.10 6.48 16 11 H 0.06 2.58 7.65 -2.39 -0.02 2.56 16 12 N -0.71 -22.07 5.07 -442.65 -2.24 -24.32 16 13 C 0.56 17.06 7.00 87.66 0.61 17.68 16 14 O -0.56 -21.16 16.32 -3.03 -0.05 -21.21 16 15 C -0.23 -5.38 2.21 -53.67 -0.12 -5.50 16 16 C 0.44 10.02 6.17 29.10 0.18 10.20 16 17 O -0.46 -12.19 16.78 -1.45 -0.02 -12.21 16 18 C -0.23 -4.63 6.10 -11.54 -0.07 -4.70 16 19 C -0.15 -2.81 10.13 30.62 0.31 -2.50 16 20 C -0.13 -1.94 10.05 30.62 0.31 -1.63 16 21 C -0.13 -2.32 9.76 30.62 0.30 -2.02 16 22 C -0.11 -1.92 9.76 30.62 0.30 -1.62 16 23 C -0.10 -4.07 5.40 30.64 0.17 -3.90 16 24 C 0.01 0.46 5.96 30.09 0.18 0.64 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.03 1.52 4.77 -2.39 -0.01 1.51 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 29 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.41 11.14 8.60 -92.71 -0.80 10.35 16 31 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.59 7.91 -2.39 -0.02 1.57 16 36 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.12 1.94 8.00 -2.39 -0.02 1.92 16 38 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.11 2.08 8.00 -2.39 -0.02 2.06 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.03 1.85 7.07 -2.39 -0.02 1.84 16 Total: -1.00 -64.70 353.73 2.96 -61.74 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.15 Total: 20.57 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 2.98 Total: -15.98 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.97 Total: -77.97 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.07 Total: -33.42 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.87 Total: 45.06 kcal Total: -64.70 2.96 -61.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187653429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.195 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds