Wall clock time and date at job start Tue Mar 31 2020 08:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99683 * 2 1 4 4 H 1.48501 * 109.46888 * 239.99841 * 3 2 1 5 5 H 1.48501 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47103 * 120.00437 * 3 2 1 7 7 C 1.37878 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.46840 * 173.99981 * 9 7 2 11 11 C 1.46901 * 110.99931 * 178.62940 * 10 9 7 12 12 C 1.50704 * 109.47206 * 199.97801 * 11 10 9 13 13 C 1.38247 * 119.92653 * 84.18158 * 12 11 10 14 14 C 1.38244 * 120.14826 * 179.97438 * 13 12 11 15 15 C 1.38569 * 119.99323 * 0.02562 * 14 13 12 16 16 O 1.36002 * 120.06754 * 180.02562 * 15 14 13 17 17 C 1.39151 * 119.85850 * 359.97438 * 15 14 13 18 18 O 1.35997 * 120.07372 * 179.97438 * 17 15 14 19 19 C 1.38239 * 119.92487 * 263.90044 * 12 11 10 20 20 C 1.46896 * 111.00318 * 302.58063 * 10 9 7 21 21 C 1.54275 * 110.03252 * 93.93780 * 20 10 9 22 22 C 1.54966 * 104.16062 * 217.13797 * 21 20 10 23 23 C 1.54890 * 102.77746 * 37.88708 * 22 21 20 24 24 C 1.53878 * 110.03345 * 336.72212 * 20 10 9 25 25 H 0.96996 * 119.99986 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46903 * 54.00092 * 9 7 2 27 27 H 1.08997 * 109.46904 * 293.99899 * 9 7 2 28 28 H 1.09004 * 109.47358 * 79.97844 * 11 10 9 29 29 H 1.09002 * 109.47084 * 319.97970 * 11 10 9 30 30 H 1.07999 * 119.92498 * 359.97438 * 13 12 11 31 31 H 1.07989 * 120.00361 * 180.02562 * 14 13 12 32 32 H 0.96703 * 113.99017 * 90.00401 * 16 15 14 33 33 H 0.96696 * 113.99745 * 90.00069 * 18 17 15 34 34 H 1.08004 * 120.00402 * 0.02562 * 19 12 11 35 35 H 1.09002 * 110.02277 * 215.32951 * 20 10 9 36 36 H 1.08998 * 110.48277 * 335.78761 * 21 20 10 37 37 H 1.09005 * 110.48432 * 98.42939 * 21 20 10 38 38 H 1.09001 * 110.71913 * 279.57660 * 22 21 20 39 39 H 1.08992 * 110.92213 * 156.29611 * 22 21 20 40 40 H 1.08999 * 110.48757 * 203.40247 * 23 22 21 41 41 H 1.08997 * 110.60073 * 80.81606 * 23 22 21 42 42 H 1.08999 * 110.03344 * 238.57007 * 24 20 10 43 43 H 1.08999 * 110.03161 * 359.95096 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.1993 -3.6118 -0.1436 11 6 1.5022 -4.9046 -0.1151 12 6 2.4828 -5.9967 0.2266 13 6 2.7862 -6.2623 1.5490 14 6 3.6847 -7.2634 1.8677 15 6 4.2838 -8.0029 0.8605 16 8 5.1675 -8.9885 1.1723 17 6 3.9784 -7.7356 -0.4705 18 8 4.5641 -8.4583 -1.4626 19 6 3.0725 -6.7346 -0.7827 20 6 2.9951 -3.4699 -1.3702 21 6 4.3238 -2.7508 -1.0579 22 6 4.5701 -1.8542 -2.2976 23 6 3.1447 -1.3651 -2.6553 24 6 2.2458 -2.5895 -2.3857 25 1 -0.4850 0.8400 0.0004 26 1 0.5467 -2.5120 -0.8311 27 1 0.7072 -2.6046 0.9392 28 1 1.0639 -5.1028 -1.0933 29 1 0.7138 -4.8757 0.6371 30 1 2.3202 -5.6863 2.3348 31 1 3.9197 -7.4691 2.9014 32 1 4.7604 -9.8568 1.2965 33 1 4.0716 -9.2513 -1.7148 34 1 2.8307 -6.5279 -1.8148 35 1 3.1939 -4.4509 -1.8017 36 1 4.2256 -2.1412 -0.1597 37 1 5.1311 -3.4742 -0.9427 38 1 4.9956 -2.4356 -3.1155 39 1 5.2158 -1.0126 -2.0471 40 1 3.0925 -1.0772 -3.7053 41 1 2.8541 -0.5307 -2.0171 42 1 2.0817 -3.1430 -3.3103 43 1 1.2913 -2.2683 -1.9688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203879595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:32 Heat of formation + Delta-G solvation = -39.751384 kcal Electronic energy + Delta-G solvation = -24183.797203 eV Core-core repulsion = 20808.917493 eV Total energy + Delta-G solvation = -3374.879710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17259 -38.75162 -36.93452 -36.70601 -34.11178 -32.64422 -30.54439 -29.63254 -27.97810 -27.14247 -26.59935 -23.98449 -22.74729 -22.02137 -21.15984 -19.82616 -18.79969 -18.12583 -17.51894 -16.60098 -16.16399 -15.78833 -15.27381 -15.01643 -14.83585 -14.33925 -14.09430 -13.75665 -13.59859 -13.03731 -12.77786 -12.56195 -12.08563 -11.89300 -11.79625 -11.72368 -11.21214 -11.04015 -10.86459 -10.79953 -10.60798 -10.40217 -10.20418 -10.17937 -10.09410 -9.89625 -9.49737 -9.15405 -8.81114 -8.72609 -8.38906 -8.31161 -7.16400 -6.03317 -3.99516 1.24499 1.33689 3.31426 3.36748 3.39547 3.61308 4.10239 4.12159 4.42224 4.90441 5.02043 5.13654 5.31888 5.42949 5.48127 5.52429 5.56630 5.74604 5.82308 5.84750 6.03138 6.12571 6.15105 6.30575 6.35610 6.38615 6.42391 6.49006 6.61867 6.71268 6.77359 6.79387 6.82397 6.90517 7.01297 7.04580 7.35063 7.38103 7.43833 7.62619 7.77813 7.93498 8.08465 8.20418 8.55504 9.06712 9.60632 11.07933 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.004485 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.728548 B = 6241.808164 C = 6674.650489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.502 4.502 8 H 0.080 0.920 9 C 0.186 3.814 10 N -0.527 5.527 11 C 0.086 3.914 12 C -0.047 4.047 13 C -0.089 4.089 14 C -0.132 4.132 15 C 0.066 3.934 16 O -0.490 6.490 17 C 0.076 3.924 18 O -0.490 6.490 19 C -0.126 4.126 20 C 0.097 3.903 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.156 4.156 25 H 0.260 0.740 26 H 0.009 0.991 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.380 0.620 33 H 0.381 0.619 34 H 0.128 0.872 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.093 0.907 42 H 0.029 0.971 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -15.226 -0.955 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.143 4.143 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.097 0.903 9 C 0.062 3.938 10 N -0.250 5.250 11 C -0.042 4.042 12 C -0.048 4.048 13 C -0.107 4.107 14 C -0.150 4.150 15 C 0.021 3.979 16 O -0.299 6.299 17 C 0.031 3.969 18 O -0.298 6.298 19 C -0.145 4.145 20 C -0.011 4.011 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.194 4.194 25 H 0.070 0.930 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.235 0.765 33 H 0.236 0.764 34 H 0.146 0.854 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.111 0.889 42 H 0.048 0.952 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.894 -14.181 -0.568 15.012 hybrid contribution -0.714 0.123 -0.776 1.061 sum 4.180 -14.058 -1.344 14.727 Atomic orbital electron populations 1.69929 1.05936 1.26700 1.51381 1.24904 0.94693 0.98836 0.95908 0.86820 0.79722 0.83547 0.78856 1.19884 1.21505 1.20210 1.21435 0.94341 0.89407 1.48814 0.90272 1.19963 0.90486 0.87539 0.95828 1.62403 1.26139 1.00691 1.35792 1.21057 0.93702 0.89390 1.00054 1.19939 0.97106 0.95170 0.92606 1.20992 0.97058 0.96160 0.96509 1.21314 0.97116 0.97587 0.99003 1.18744 0.94201 0.93837 0.91130 1.84937 1.33645 1.19407 1.91935 1.18724 0.95651 0.95920 0.86618 1.84938 1.50404 1.40775 1.53727 1.21280 0.96585 0.96665 1.00004 1.22065 0.93767 0.96423 0.88868 1.22587 0.95248 0.97826 0.99114 1.22447 0.97537 0.98557 0.97595 1.22411 0.93831 0.99876 0.99169 1.22915 1.03291 0.96336 0.96876 0.92998 0.97382 0.95664 0.94644 0.90288 0.85002 0.85300 0.76530 0.76439 0.85444 0.93071 0.88859 0.93916 0.93325 0.92805 0.94517 0.88863 0.95213 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 13.29 55.43 0.74 -24.50 16 2 C 0.06 1.52 5.14 -17.82 -0.09 1.43 16 3 Si 0.88 20.79 28.51 -169.99 -4.85 15.94 16 4 H -0.27 -6.28 7.09 56.52 0.40 -5.88 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -12.74 5.24 -34.44 -0.18 -12.92 16 8 H 0.08 2.00 3.91 -52.49 -0.21 1.80 16 9 C 0.19 4.43 4.16 -4.98 -0.02 4.41 16 10 N -0.53 -10.61 4.36 -228.17 -1.00 -11.60 16 11 C 0.09 1.45 5.02 -4.97 -0.02 1.43 16 12 C -0.05 -0.71 5.13 -104.62 -0.54 -1.25 16 13 C -0.09 -1.24 9.71 -39.58 -0.38 -1.63 16 14 C -0.13 -1.69 9.98 -39.46 -0.39 -2.08 16 15 C 0.07 0.87 6.72 -39.12 -0.26 0.61 16 16 O -0.49 -5.75 13.29 -34.25 -0.46 -6.21 16 17 C 0.08 1.04 6.72 -39.12 -0.26 0.77 16 18 O -0.49 -6.04 13.29 -34.23 -0.45 -6.49 16 19 C -0.13 -1.80 8.52 -39.46 -0.34 -2.14 16 20 C 0.10 1.89 2.72 -66.59 -0.18 1.71 16 21 C -0.11 -2.14 5.88 -25.03 -0.15 -2.29 16 22 C -0.12 -2.26 6.90 -24.70 -0.17 -2.43 16 23 C -0.12 -2.32 6.17 -25.07 -0.15 -2.48 16 24 C -0.16 -3.16 5.63 -25.61 -0.14 -3.31 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.01 0.22 5.83 -51.93 -0.30 -0.08 16 27 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 28 H 0.04 0.58 7.90 -51.93 -0.41 0.17 16 29 H 0.08 1.29 7.84 -51.93 -0.41 0.89 16 30 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.38 2.35 9.06 45.56 0.41 2.77 16 33 H 0.38 2.58 9.06 45.56 0.41 2.99 16 34 H 0.13 1.75 7.47 -52.48 -0.39 1.36 16 35 H 0.05 0.94 5.76 -51.93 -0.30 0.64 16 36 H 0.09 2.02 5.39 -51.93 -0.28 1.74 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 2.13 4.68 -51.93 -0.24 1.88 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.11 2.57 3.99 -51.93 -0.21 2.36 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -30.32 331.76 -8.74 -39.06 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.43 Total: 8.96 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -3.29 Total: -20.15 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.26 Total: -36.11 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.91 Total: -12.70 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.85 Total: 15.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.32 -8.74 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203879595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.694 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds