Wall clock time and date at job start Tue Mar 31 2020 08:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99683 * 2 1 4 4 H 1.48501 * 109.46888 * 239.99841 * 3 2 1 5 5 H 1.48501 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47103 * 120.00437 * 3 2 1 7 7 C 1.37878 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.46840 * 173.99981 * 9 7 2 11 11 C 1.46901 * 110.99931 * 178.62940 * 10 9 7 12 12 C 1.50704 * 109.47206 * 199.97801 * 11 10 9 13 13 C 1.38247 * 119.92653 * 84.18158 * 12 11 10 14 14 C 1.38244 * 120.14826 * 179.97438 * 13 12 11 15 15 C 1.38569 * 119.99323 * 0.02562 * 14 13 12 16 16 O 1.36002 * 120.06754 * 180.02562 * 15 14 13 17 17 C 1.39151 * 119.85850 * 359.97438 * 15 14 13 18 18 O 1.35997 * 120.07372 * 179.97438 * 17 15 14 19 19 C 1.38239 * 119.92487 * 263.90044 * 12 11 10 20 20 C 1.46896 * 111.00318 * 302.58063 * 10 9 7 21 21 C 1.54275 * 110.03252 * 93.93780 * 20 10 9 22 22 C 1.54966 * 104.16062 * 217.13797 * 21 20 10 23 23 C 1.54890 * 102.77746 * 37.88708 * 22 21 20 24 24 C 1.53878 * 110.03345 * 336.72212 * 20 10 9 25 25 H 0.96996 * 119.99986 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46903 * 54.00092 * 9 7 2 27 27 H 1.08997 * 109.46904 * 293.99899 * 9 7 2 28 28 H 1.09004 * 109.47358 * 79.97844 * 11 10 9 29 29 H 1.09002 * 109.47084 * 319.97970 * 11 10 9 30 30 H 1.07999 * 119.92498 * 359.97438 * 13 12 11 31 31 H 1.07989 * 120.00361 * 180.02562 * 14 13 12 32 32 H 0.96703 * 113.99017 * 90.00401 * 16 15 14 33 33 H 0.96696 * 113.99745 * 90.00069 * 18 17 15 34 34 H 1.08004 * 120.00402 * 0.02562 * 19 12 11 35 35 H 1.09002 * 110.02277 * 215.32951 * 20 10 9 36 36 H 1.08998 * 110.48277 * 335.78761 * 21 20 10 37 37 H 1.09005 * 110.48432 * 98.42939 * 21 20 10 38 38 H 1.09001 * 110.71913 * 279.57660 * 22 21 20 39 39 H 1.08992 * 110.92213 * 156.29611 * 22 21 20 40 40 H 1.08999 * 110.48757 * 203.40247 * 23 22 21 41 41 H 1.08997 * 110.60073 * 80.81606 * 23 22 21 42 42 H 1.08999 * 110.03344 * 238.57007 * 24 20 10 43 43 H 1.08999 * 110.03161 * 359.95096 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.1993 -3.6118 -0.1436 11 6 1.5022 -4.9046 -0.1151 12 6 2.4828 -5.9967 0.2266 13 6 2.7862 -6.2623 1.5490 14 6 3.6847 -7.2634 1.8677 15 6 4.2838 -8.0029 0.8605 16 8 5.1675 -8.9885 1.1723 17 6 3.9784 -7.7356 -0.4705 18 8 4.5641 -8.4583 -1.4626 19 6 3.0725 -6.7346 -0.7827 20 6 2.9951 -3.4699 -1.3702 21 6 4.3238 -2.7508 -1.0579 22 6 4.5701 -1.8542 -2.2976 23 6 3.1447 -1.3651 -2.6553 24 6 2.2458 -2.5895 -2.3857 25 1 -0.4850 0.8400 0.0004 26 1 0.5467 -2.5120 -0.8311 27 1 0.7072 -2.6046 0.9392 28 1 1.0639 -5.1028 -1.0933 29 1 0.7138 -4.8757 0.6371 30 1 2.3202 -5.6863 2.3348 31 1 3.9197 -7.4691 2.9014 32 1 4.7604 -9.8568 1.2965 33 1 4.0716 -9.2513 -1.7148 34 1 2.8307 -6.5279 -1.8148 35 1 3.1939 -4.4509 -1.8017 36 1 4.2256 -2.1412 -0.1597 37 1 5.1311 -3.4742 -0.9427 38 1 4.9956 -2.4356 -3.1155 39 1 5.2158 -1.0126 -2.0471 40 1 3.0925 -1.0772 -3.7053 41 1 2.8541 -0.5307 -2.0171 42 1 2.0817 -3.1430 -3.3103 43 1 1.2913 -2.2683 -1.9688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203879595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:30 Heat of formation + Delta-G solvation = -61.231166 kcal Electronic energy + Delta-G solvation = -24184.728637 eV Core-core repulsion = 20808.917493 eV Total energy + Delta-G solvation = -3375.811143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.24020 -40.25795 -37.85808 -37.78835 -35.62443 -34.56950 -31.78294 -30.74874 -29.60630 -28.89471 -28.01891 -25.54059 -23.88983 -23.63634 -22.32467 -21.37146 -19.93489 -19.51103 -18.68764 -18.31475 -17.31235 -16.95693 -16.80607 -16.66498 -16.17945 -15.78527 -15.28251 -15.25022 -14.65457 -14.58008 -14.38381 -13.87399 -13.64619 -13.26116 -13.17905 -12.92740 -12.76347 -12.63960 -12.56351 -12.29673 -12.17836 -12.05469 -11.71058 -11.63110 -11.54499 -11.34495 -11.06924 -10.85093 -10.62863 -10.38464 -9.77821 -9.37810 -8.82060 -8.08170 -6.08145 0.21196 0.31068 1.43398 1.44309 1.50307 2.45115 2.58596 3.14337 3.26867 3.27932 3.47445 3.90144 3.91666 3.99472 4.04387 4.28952 4.35776 4.40919 4.58378 4.62677 4.71511 4.79708 4.84848 4.91669 4.97987 5.00233 5.03177 5.14282 5.22336 5.24388 5.26333 5.32240 5.35985 5.38438 5.55232 5.69041 5.75859 5.81940 5.88922 5.96069 6.22281 6.45616 6.67064 6.77800 7.00703 7.05967 7.55764 9.03451 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.004485 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.728548 B = 6241.808164 C = 6674.650489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.012 3.988 3 Si 0.933 3.067 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.494 4.494 8 H 0.083 0.917 9 C 0.201 3.799 10 N -0.531 5.531 11 C 0.089 3.911 12 C -0.061 4.061 13 C -0.097 4.097 14 C -0.129 4.129 15 C 0.070 3.930 16 O -0.500 6.500 17 C 0.075 3.925 18 O -0.500 6.500 19 C -0.130 4.130 20 C 0.099 3.901 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.154 4.154 25 H 0.258 0.742 26 H -0.011 1.011 27 H -0.002 1.002 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.406 0.594 33 H 0.405 0.595 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -16.756 -1.533 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.100 0.900 9 C 0.076 3.924 10 N -0.254 5.254 11 C -0.039 4.039 12 C -0.061 4.061 13 C -0.116 4.116 14 C -0.148 4.148 15 C 0.024 3.976 16 O -0.312 6.312 17 C 0.030 3.970 18 O -0.313 6.313 19 C -0.150 4.150 20 C -0.009 4.009 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.192 4.192 25 H 0.066 0.934 26 H 0.006 0.994 27 H 0.016 0.984 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.149 0.851 31 H 0.167 0.833 32 H 0.264 0.736 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.995 -15.762 -1.151 17.282 hybrid contribution -1.331 0.420 -0.604 1.520 sum 5.664 -15.342 -1.755 16.448 Atomic orbital electron populations 1.70054 1.07348 1.27073 1.53301 1.25540 0.95193 1.01706 0.96029 0.85996 0.78673 0.80168 0.79169 1.18725 1.21857 1.19962 1.21689 0.94515 0.90003 1.46971 0.89967 1.19633 0.90473 0.88723 0.93577 1.62304 1.25556 1.01003 1.36576 1.21039 0.94208 0.88455 1.00196 1.19716 0.97685 0.95299 0.93442 1.21058 0.97620 0.96754 0.96126 1.21484 0.96394 0.96773 1.00114 1.18816 0.93630 0.94102 0.91003 1.84866 1.33895 1.20663 1.91796 1.18744 0.95232 0.95876 0.87161 1.84869 1.51034 1.42000 1.53356 1.21282 0.96908 0.96917 0.99849 1.22109 0.93490 0.97043 0.88265 1.22525 0.95574 0.97931 0.98609 1.22419 0.96395 0.98794 0.97662 1.22366 0.95084 0.98691 0.99531 1.22820 1.01727 0.96927 0.97715 0.93351 0.99379 0.98433 0.94314 0.90682 0.85059 0.83281 0.73566 0.73626 0.85190 0.91469 0.91448 0.92635 0.90857 0.92102 0.92901 0.91886 0.93402 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.23 13.29 21.45 0.28 -53.95 16 2 C 0.01 0.67 5.14 84.65 0.43 1.11 16 3 Si 0.93 43.11 28.51 68.60 1.96 45.06 16 4 H -0.26 -11.56 7.09 99.48 0.71 -10.85 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.49 -25.60 5.24 25.60 0.13 -25.46 16 8 H 0.08 4.19 3.91 -2.91 -0.01 4.18 16 9 C 0.20 9.94 4.16 85.56 0.36 10.30 16 10 N -0.53 -21.59 4.36 -875.81 -3.82 -25.41 16 11 C 0.09 3.01 5.02 85.56 0.43 3.44 16 12 C -0.06 -1.77 5.13 -19.86 -0.10 -1.87 16 13 C -0.10 -2.61 9.71 22.27 0.22 -2.40 16 14 C -0.13 -3.03 9.98 22.35 0.22 -2.81 16 15 C 0.07 1.65 6.72 22.57 0.15 1.81 16 16 O -0.50 -10.10 13.29 -79.71 -1.06 -11.16 16 17 C 0.07 1.86 6.72 22.57 0.15 2.01 16 18 O -0.50 -10.87 13.29 -79.66 -1.06 -11.93 16 19 C -0.13 -3.49 8.52 22.35 0.19 -3.30 16 20 C 0.10 3.76 2.72 45.64 0.12 3.89 16 21 C -0.11 -4.05 5.88 31.70 0.19 -3.86 16 22 C -0.11 -3.91 6.90 31.91 0.22 -3.69 16 23 C -0.12 -4.65 6.17 31.67 0.20 -4.45 16 24 C -0.15 -6.15 5.63 31.32 0.18 -5.97 16 25 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 26 H -0.01 -0.59 5.83 -2.39 -0.01 -0.60 16 27 H 0.00 -0.13 8.04 -2.39 -0.02 -0.14 16 28 H 0.04 1.27 7.90 -2.38 -0.02 1.25 16 29 H 0.07 2.55 7.84 -2.39 -0.02 2.53 16 30 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.15 2.82 8.06 -2.92 -0.02 2.79 16 32 H 0.41 3.60 9.06 -74.06 -0.67 2.93 16 33 H 0.41 4.23 9.06 -74.06 -0.67 3.56 16 34 H 0.13 3.33 7.47 -2.91 -0.02 3.31 16 35 H 0.07 2.34 5.76 -2.39 -0.01 2.33 16 36 H 0.07 2.88 5.39 -2.39 -0.01 2.86 16 37 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.85 4.68 -2.39 -0.01 2.84 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.08 3.62 3.99 -2.39 -0.01 3.61 16 Total: -1.00 -65.16 331.76 -0.90 -66.06 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.29 Total: 22.58 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.09 Total: -31.26 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -3.54 Total: -79.36 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -2.12 Total: -23.09 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.96 Total: 45.06 kcal Total: -65.16 -0.90 -66.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203879595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.831 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds