Wall clock time and date at job start Tue Mar 31 2020 08:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86792 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47529 * 269.99951 * 3 2 1 5 5 H 1.48499 * 109.46996 * 29.99738 * 3 2 1 6 6 H 1.48499 * 109.47236 * 149.99829 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00512 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46880 * 185.42285 * 9 7 2 11 11 C 1.46901 * 110.99839 * 184.00777 * 10 9 7 12 12 C 1.50694 * 109.47262 * 175.84054 * 11 10 9 13 13 C 1.38196 * 119.97304 * 271.32154 * 12 11 10 14 14 C 1.38156 * 120.11200 * 179.74174 * 13 12 11 15 15 C 1.38793 * 120.05105 * 0.26044 * 14 13 12 16 16 O 1.35905 * 120.02416 * 180.02562 * 15 14 13 17 17 C 1.38605 * 119.94675 * 359.97438 * 15 14 13 18 18 C 1.38654 * 119.89278 * 0.02562 * 17 15 14 19 19 O 1.35901 * 120.03080 * 179.97438 * 18 17 15 20 20 C 1.46892 * 111.00182 * 60.05313 * 10 9 7 21 21 C 1.54269 * 110.03376 * 32.54287 * 20 10 9 22 22 C 1.54958 * 104.16084 * 217.13642 * 21 20 10 23 23 C 1.54890 * 102.77862 * 37.89018 * 22 21 20 24 24 C 1.53880 * 110.03295 * 275.32948 * 20 10 9 25 25 H 0.96999 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47029 * 65.42300 * 9 7 2 27 27 H 1.09005 * 109.47155 * 305.41739 * 9 7 2 28 28 H 1.09004 * 109.47041 * 55.83640 * 11 10 9 29 29 H 1.09004 * 109.47040 * 295.84196 * 11 10 9 30 30 H 1.08006 * 119.94310 * 0.02562 * 13 12 11 31 31 H 1.07997 * 119.97401 * 180.27826 * 14 13 12 32 32 H 0.96694 * 113.99789 * 90.00152 * 16 15 14 33 33 H 1.08006 * 120.05349 * 179.97438 * 17 15 14 34 34 H 0.96705 * 113.99664 * 83.63997 * 19 18 17 35 35 H 1.09003 * 110.02011 * 153.94021 * 20 10 9 36 36 H 1.08994 * 110.48780 * 335.78769 * 21 20 10 37 37 H 1.09002 * 110.48073 * 98.43035 * 21 20 10 38 38 H 1.09002 * 110.72295 * 279.57583 * 22 21 20 39 39 H 1.09000 * 110.92437 * 156.29898 * 22 21 20 40 40 H 1.09007 * 110.48828 * 203.40505 * 23 22 21 41 41 H 1.09001 * 110.60044 * 80.81608 * 23 22 21 42 42 H 1.09006 * 110.03217 * 238.57309 * 24 20 10 43 43 H 1.09003 * 110.02778 * 359.95049 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2001 -3.6127 0.1320 11 6 1.5101 -4.9063 0.0405 12 6 2.5242 -6.0203 0.0768 13 6 3.0947 -6.4732 -1.0976 14 6 4.0287 -7.4908 -1.0671 15 6 4.3923 -8.0644 0.1434 16 8 5.3115 -9.0649 0.1728 17 6 3.8180 -7.6151 1.3221 18 6 2.8809 -6.5938 1.2889 19 8 2.3156 -6.1515 2.4429 20 6 2.9620 -3.5099 1.3837 21 6 2.0892 -2.8692 2.4826 22 6 3.0767 -1.9818 3.2817 23 6 3.9969 -1.4105 2.1745 24 6 4.1747 -2.5831 1.1881 25 1 -0.4850 0.8400 -0.0004 26 1 0.6994 -2.6003 -0.9342 27 1 0.5531 -2.5158 0.8378 28 1 0.9508 -4.9544 -0.8939 29 1 0.8237 -5.0122 0.8806 30 1 2.8132 -6.0279 -2.0404 31 1 4.4764 -7.8400 -1.9857 32 1 6.2235 -8.7584 0.2697 33 1 4.0994 -8.0605 2.2650 34 1 2.8472 -5.4962 2.9153 35 1 3.2949 -4.4984 1.7002 36 1 1.3027 -2.2595 2.0380 37 1 1.6600 -3.6379 3.1253 38 1 3.6496 -2.5822 3.9884 39 1 2.5491 -1.1795 3.7976 40 1 4.9590 -1.1147 2.5930 41 1 3.5210 -0.5641 1.6792 42 1 5.0960 -3.1216 1.4104 43 1 4.1983 -2.2103 0.1641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204274683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:09 Heat of formation + Delta-G solvation = -34.548185 kcal Electronic energy + Delta-G solvation = -24669.939956 eV Core-core repulsion = 21295.285873 eV Total energy + Delta-G solvation = -3374.654082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37532 -38.71882 -37.57531 -35.87503 -34.19546 -32.64114 -30.49046 -29.75833 -28.09606 -27.44125 -26.52626 -23.96924 -22.71611 -21.90253 -21.14803 -19.87799 -19.03691 -18.34883 -17.26767 -16.74601 -16.20089 -15.85466 -15.36820 -14.96265 -14.70536 -14.37410 -14.11988 -13.63792 -13.57174 -13.19070 -12.91104 -12.58810 -12.31751 -11.86971 -11.80059 -11.55363 -11.21244 -11.01431 -10.87741 -10.69208 -10.51688 -10.48313 -10.38733 -10.28336 -10.15106 -9.86169 -9.49844 -9.32738 -8.83355 -8.75939 -8.44027 -8.32558 -7.15137 -6.03100 -4.01090 1.22515 1.32338 3.28754 3.36502 3.36951 3.48541 4.09738 4.40027 4.43091 4.90432 5.00880 5.09418 5.17826 5.32115 5.41197 5.45259 5.52579 5.69868 5.77685 5.89809 5.98727 6.02318 6.22425 6.26368 6.29842 6.34330 6.39743 6.41291 6.48148 6.65928 6.67600 6.69390 6.73577 6.78718 7.01111 7.01820 7.26364 7.40382 7.52215 7.56689 7.73103 7.88704 8.09056 8.19402 8.55198 9.05830 9.60911 11.08247 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.004858 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.764357 B = 5761.843973 C = 6037.491702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.084 0.916 9 C 0.184 3.816 10 N -0.524 5.524 11 C 0.089 3.911 12 C -0.089 4.089 13 C -0.069 4.069 14 C -0.155 4.155 15 C 0.107 3.893 16 O -0.501 6.501 17 C -0.178 4.178 18 C 0.125 3.875 19 O -0.495 6.495 20 C 0.095 3.905 21 C -0.168 4.168 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.107 4.107 25 H 0.259 0.741 26 H 0.024 0.976 27 H 0.010 0.990 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.388 0.612 33 H 0.129 0.871 34 H 0.389 0.611 35 H 0.050 0.950 36 H 0.118 0.882 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.091 0.909 42 H 0.036 0.964 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 -11.308 2.760 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.102 0.898 9 C 0.060 3.940 10 N -0.248 5.248 11 C -0.039 4.039 12 C -0.090 4.090 13 C -0.088 4.088 14 C -0.173 4.173 15 C 0.063 3.937 16 O -0.310 6.310 17 C -0.197 4.197 18 C 0.080 3.920 19 O -0.308 6.308 20 C -0.014 4.014 21 C -0.206 4.206 22 C -0.150 4.150 23 C -0.164 4.164 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.243 0.757 33 H 0.147 0.853 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.054 0.946 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.183 -11.890 2.153 14.594 hybrid contribution 0.629 1.458 0.951 1.851 sum 8.811 -10.432 3.104 14.004 Atomic orbital electron populations 1.69951 1.05975 1.26552 1.51405 1.24941 0.94691 0.98923 0.95875 0.86752 0.79998 0.83940 0.78153 1.20812 1.21476 1.19439 1.21623 0.94609 0.89377 1.48976 0.89786 1.19938 0.90500 0.87443 0.96128 1.62567 1.27858 1.00954 1.33419 1.20964 0.93114 0.88276 1.01534 1.20324 0.99198 0.97204 0.92252 1.20864 0.94904 0.94811 0.98204 1.21400 1.00656 0.97681 0.97569 1.18177 0.93697 0.89831 0.92001 1.84818 1.18843 1.31559 1.95821 1.21616 0.99964 0.99372 0.98720 1.18053 0.93695 0.94233 0.86052 1.84844 1.48865 1.62419 1.34695 1.22159 0.94165 0.96191 0.88857 1.23344 1.00814 0.99427 0.97049 1.22269 0.97320 0.98525 0.96881 1.22557 0.97644 0.99929 0.96267 1.22248 0.95062 0.95594 1.01519 0.93083 0.95786 0.97280 0.90509 0.93944 0.84813 0.85454 0.75694 0.85287 0.75120 0.93205 0.86378 0.93965 0.93627 0.92640 0.94145 0.89091 0.94558 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 3 Si 0.88 20.53 28.60 -169.99 -4.86 15.67 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.01 6.69 56.52 0.38 -5.63 16 7 C -0.51 -12.75 5.83 -34.44 -0.20 -12.95 16 8 H 0.08 2.06 3.28 -52.49 -0.17 1.89 16 9 C 0.18 4.41 4.20 -4.97 -0.02 4.39 16 10 N -0.52 -10.41 4.42 -228.17 -1.01 -11.42 16 11 C 0.09 1.58 4.98 -4.98 -0.02 1.56 16 12 C -0.09 -1.38 4.81 -104.45 -0.50 -1.89 16 13 C -0.07 -0.96 9.69 -39.63 -0.38 -1.35 16 14 C -0.15 -1.93 9.98 -39.41 -0.39 -2.33 16 15 C 0.11 1.36 6.70 -39.24 -0.26 1.09 16 16 O -0.50 -5.41 13.50 -19.44 -0.26 -5.67 16 17 C -0.18 -2.36 9.93 -39.29 -0.39 -2.75 16 18 C 0.12 1.85 5.44 -39.24 -0.21 1.64 16 19 O -0.49 -7.30 11.86 -19.43 -0.23 -7.53 16 20 C 0.10 1.70 2.38 -66.59 -0.16 1.55 16 21 C -0.17 -3.13 5.59 -25.03 -0.14 -3.27 16 22 C -0.11 -1.91 6.91 -24.70 -0.17 -2.08 16 23 C -0.13 -2.31 6.18 -25.07 -0.16 -2.47 16 24 C -0.11 -1.93 5.64 -25.61 -0.14 -2.08 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 26 H 0.02 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.01 0.25 5.76 -51.93 -0.30 -0.05 16 28 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.04 0.80 7.48 -51.93 -0.39 0.41 16 30 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.39 2.29 9.06 45.56 0.41 2.70 16 33 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.39 4.86 6.41 45.56 0.29 5.16 16 35 H 0.05 0.80 2.96 -51.93 -0.15 0.65 16 36 H 0.12 2.69 4.14 -51.93 -0.22 2.47 16 37 H 0.04 0.71 7.50 -51.93 -0.39 0.32 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.93 4.56 -51.93 -0.24 1.70 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.82 5.79 -51.93 -0.30 1.51 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -28.96 324.48 -8.40 -37.36 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -4.41 Total: 10.86 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -3.26 Total: -19.54 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.27 Total: -36.05 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.49 Total: -13.20 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.86 Total: 15.67 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.96 -8.40 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204274683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.816 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds