Wall clock time and date at job start Tue Mar 31 2020 08:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86792 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47529 * 269.99951 * 3 2 1 5 5 H 1.48499 * 109.46996 * 29.99738 * 3 2 1 6 6 H 1.48499 * 109.47236 * 149.99829 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00512 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46880 * 185.42285 * 9 7 2 11 11 C 1.46901 * 110.99839 * 184.00777 * 10 9 7 12 12 C 1.50694 * 109.47262 * 175.84054 * 11 10 9 13 13 C 1.38196 * 119.97304 * 271.32154 * 12 11 10 14 14 C 1.38156 * 120.11200 * 179.74174 * 13 12 11 15 15 C 1.38793 * 120.05105 * 0.26044 * 14 13 12 16 16 O 1.35905 * 120.02416 * 180.02562 * 15 14 13 17 17 C 1.38605 * 119.94675 * 359.97438 * 15 14 13 18 18 C 1.38654 * 119.89278 * 0.02562 * 17 15 14 19 19 O 1.35901 * 120.03080 * 179.97438 * 18 17 15 20 20 C 1.46892 * 111.00182 * 60.05313 * 10 9 7 21 21 C 1.54269 * 110.03376 * 32.54287 * 20 10 9 22 22 C 1.54958 * 104.16084 * 217.13642 * 21 20 10 23 23 C 1.54890 * 102.77862 * 37.89018 * 22 21 20 24 24 C 1.53880 * 110.03295 * 275.32948 * 20 10 9 25 25 H 0.96999 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47029 * 65.42300 * 9 7 2 27 27 H 1.09005 * 109.47155 * 305.41739 * 9 7 2 28 28 H 1.09004 * 109.47041 * 55.83640 * 11 10 9 29 29 H 1.09004 * 109.47040 * 295.84196 * 11 10 9 30 30 H 1.08006 * 119.94310 * 0.02562 * 13 12 11 31 31 H 1.07997 * 119.97401 * 180.27826 * 14 13 12 32 32 H 0.96694 * 113.99789 * 90.00152 * 16 15 14 33 33 H 1.08006 * 120.05349 * 179.97438 * 17 15 14 34 34 H 0.96705 * 113.99664 * 83.63997 * 19 18 17 35 35 H 1.09003 * 110.02011 * 153.94021 * 20 10 9 36 36 H 1.08994 * 110.48780 * 335.78769 * 21 20 10 37 37 H 1.09002 * 110.48073 * 98.43035 * 21 20 10 38 38 H 1.09002 * 110.72295 * 279.57583 * 22 21 20 39 39 H 1.09000 * 110.92437 * 156.29898 * 22 21 20 40 40 H 1.09007 * 110.48828 * 203.40505 * 23 22 21 41 41 H 1.09001 * 110.60044 * 80.81608 * 23 22 21 42 42 H 1.09006 * 110.03217 * 238.57309 * 24 20 10 43 43 H 1.09003 * 110.02778 * 359.95049 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2001 -3.6127 0.1320 11 6 1.5101 -4.9063 0.0405 12 6 2.5242 -6.0203 0.0768 13 6 3.0947 -6.4732 -1.0976 14 6 4.0287 -7.4908 -1.0671 15 6 4.3923 -8.0644 0.1434 16 8 5.3115 -9.0649 0.1728 17 6 3.8180 -7.6151 1.3221 18 6 2.8809 -6.5938 1.2889 19 8 2.3156 -6.1515 2.4429 20 6 2.9620 -3.5099 1.3837 21 6 2.0892 -2.8692 2.4826 22 6 3.0767 -1.9818 3.2817 23 6 3.9969 -1.4105 2.1745 24 6 4.1747 -2.5831 1.1881 25 1 -0.4850 0.8400 -0.0004 26 1 0.6994 -2.6003 -0.9342 27 1 0.5531 -2.5158 0.8378 28 1 0.9508 -4.9544 -0.8939 29 1 0.8237 -5.0122 0.8806 30 1 2.8132 -6.0279 -2.0404 31 1 4.4764 -7.8400 -1.9857 32 1 6.2235 -8.7584 0.2697 33 1 4.0994 -8.0605 2.2650 34 1 2.8472 -5.4962 2.9153 35 1 3.2949 -4.4984 1.7002 36 1 1.3027 -2.2595 2.0380 37 1 1.6600 -3.6379 3.1253 38 1 3.6496 -2.5822 3.9884 39 1 2.5491 -1.1795 3.7976 40 1 4.9590 -1.1147 2.5930 41 1 3.5210 -0.5641 1.6792 42 1 5.0960 -3.1216 1.4104 43 1 4.1983 -2.2103 0.1641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204274683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:03 Heat of formation + Delta-G solvation = -55.574220 kcal Electronic energy + Delta-G solvation = -24670.851713 eV Core-core repulsion = 21295.285873 eV Total energy + Delta-G solvation = -3375.565840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.46 seconds Orbital eigenvalues (eV) -41.54976 -40.02225 -38.67506 -36.96255 -35.64259 -34.58232 -31.73468 -30.88311 -29.57677 -29.18756 -27.94995 -25.50287 -23.77913 -23.62938 -22.32856 -21.31809 -20.13740 -19.76538 -18.75530 -18.14168 -17.32437 -16.99516 -16.79892 -16.56019 -16.08753 -15.90424 -15.39385 -15.02682 -14.80113 -14.62201 -14.32180 -14.03017 -13.72965 -13.40208 -13.02851 -12.97514 -12.92249 -12.60705 -12.49546 -12.18004 -11.94332 -11.82056 -11.70340 -11.61077 -11.57618 -11.41529 -11.10380 -10.94645 -10.62897 -10.48386 -9.79838 -9.43047 -8.80651 -8.08093 -6.10563 0.17763 0.29415 1.42074 1.44042 1.52372 2.43505 2.50358 3.08653 3.27435 3.40434 3.48934 3.88580 3.92935 3.97875 4.03178 4.15884 4.31059 4.40700 4.58371 4.62925 4.71874 4.80216 4.85399 4.92745 4.95122 4.98320 5.03332 5.15249 5.19139 5.25480 5.26098 5.34321 5.39390 5.41133 5.55675 5.62309 5.74105 5.76262 5.87124 5.92916 6.20892 6.46436 6.65561 6.75515 6.87876 7.05384 7.55677 9.04014 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.004858 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.764357 B = 5761.843973 C = 6037.491702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.005 3.995 3 Si 0.939 3.061 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.497 4.497 8 H 0.094 0.906 9 C 0.199 3.801 10 N -0.526 5.526 11 C 0.095 3.905 12 C -0.111 4.111 13 C -0.073 4.073 14 C -0.152 4.152 15 C 0.120 3.880 16 O -0.504 6.504 17 C -0.179 4.179 18 C 0.117 3.883 19 O -0.505 6.505 20 C 0.097 3.903 21 C -0.166 4.166 22 C -0.106 4.106 23 C -0.129 4.129 24 C -0.105 4.105 25 H 0.256 0.744 26 H -0.010 1.010 27 H -0.014 1.014 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.412 0.588 33 H 0.145 0.855 34 H 0.398 0.602 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.127 -12.886 3.612 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.535 4.535 8 H 0.112 0.888 9 C 0.074 3.926 10 N -0.249 5.249 11 C -0.033 4.033 12 C -0.112 4.112 13 C -0.092 4.092 14 C -0.170 4.170 15 C 0.075 3.925 16 O -0.318 6.318 17 C -0.198 4.198 18 C 0.072 3.928 19 O -0.319 6.319 20 C -0.012 4.012 21 C -0.204 4.204 22 C -0.144 4.144 23 C -0.166 4.166 24 C -0.142 4.142 25 H 0.065 0.935 26 H 0.008 0.992 27 H 0.003 0.997 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.272 0.728 33 H 0.163 0.837 34 H 0.258 0.742 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.400 -13.478 3.012 17.907 hybrid contribution -0.304 1.795 0.680 1.943 sum 11.096 -11.683 3.691 16.530 Atomic orbital electron populations 1.70098 1.07625 1.26980 1.53513 1.25674 0.95247 1.02186 0.96025 0.85848 0.79504 0.80048 0.78024 1.20828 1.21981 1.17524 1.21932 0.95064 0.89696 1.46833 0.88824 1.19600 0.90589 0.89038 0.93404 1.62469 1.26808 1.00675 1.34939 1.20854 0.93724 0.88238 1.00449 1.20137 1.00012 0.97440 0.93621 1.20956 0.95101 0.95342 0.97768 1.21607 0.99857 0.96854 0.98698 1.18232 0.93495 0.89124 0.91669 1.84765 1.20251 1.31064 1.95703 1.21751 0.99390 0.98825 0.99841 1.18136 0.94212 0.94906 0.85560 1.84834 1.49513 1.62770 1.34814 1.22256 0.93716 0.97567 0.87628 1.23195 1.00128 0.99482 0.97643 1.22272 0.96836 0.98374 0.96916 1.22512 0.98833 0.98756 0.96497 1.22215 0.96261 0.95802 0.99950 0.93484 0.99221 0.99682 0.91285 0.95537 0.84526 0.83144 0.72831 0.83675 0.74177 0.90640 0.91027 0.92582 0.89984 0.93416 0.91478 0.92537 0.91526 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.51 13.29 21.45 0.28 -55.23 16 2 C 0.01 0.29 5.46 84.66 0.46 0.76 16 3 Si 0.94 42.91 28.60 68.60 1.96 44.87 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.25 -10.64 6.69 99.48 0.67 -9.98 16 7 C -0.50 -25.76 5.83 25.60 0.15 -25.61 16 8 H 0.09 4.64 3.28 -2.91 -0.01 4.63 16 9 C 0.20 10.06 4.20 85.56 0.36 10.42 16 10 N -0.53 -21.35 4.42 -875.79 -3.87 -25.21 16 11 C 0.10 3.48 4.98 85.56 0.43 3.90 16 12 C -0.11 -3.37 4.81 -19.75 -0.10 -3.47 16 13 C -0.07 -1.93 9.69 22.24 0.22 -1.71 16 14 C -0.15 -3.34 9.98 22.38 0.22 -3.12 16 15 C 0.12 2.59 6.70 22.49 0.15 2.75 16 16 O -0.50 -8.77 13.50 -92.48 -1.25 -10.02 16 17 C -0.18 -4.20 9.93 22.46 0.22 -3.98 16 18 C 0.12 3.25 5.44 22.49 0.12 3.37 16 19 O -0.50 -14.08 11.86 -92.43 -1.10 -15.17 16 20 C 0.10 3.38 2.38 45.64 0.11 3.49 16 21 C -0.17 -6.15 5.59 31.69 0.18 -5.97 16 22 C -0.11 -3.42 6.91 31.91 0.22 -3.20 16 23 C -0.13 -4.44 6.18 31.67 0.20 -4.24 16 24 C -0.10 -3.58 5.64 31.32 0.18 -3.41 16 25 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 26 H -0.01 -0.58 8.12 -2.39 -0.02 -0.60 16 27 H -0.01 -0.78 5.76 -2.38 -0.01 -0.80 16 28 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 29 H 0.03 1.04 7.48 -2.38 -0.02 1.02 16 30 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.41 2.98 9.06 -74.06 -0.67 2.31 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.40 9.01 6.41 -74.05 -0.47 8.54 16 35 H 0.08 2.28 2.96 -2.39 -0.01 2.27 16 36 H 0.07 3.40 4.14 -2.39 -0.01 3.39 16 37 H 0.06 1.87 7.50 -2.39 -0.02 1.85 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.06 2.35 4.56 -2.39 -0.01 2.34 16 42 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.06 2.50 5.79 -2.39 -0.01 2.49 16 Total: -1.00 -64.69 324.48 -0.98 -65.67 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.12 Total: 25.11 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 3.12 Total: -30.01 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -3.58 Total: -80.44 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -2.35 Total: -25.20 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.96 Total: 44.87 kcal Total: -64.69 -0.98 -65.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204274683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.093 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.46 seconds