Wall clock time and date at job start Tue Mar 31 2020 08:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46977 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99939 * 3 2 1 7 7 C 1.38815 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 359.95842 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 O 1.42893 * 110.84950 * 153.69922 * 12 11 10 15 15 C 1.42908 * 113.99673 * 155.08534 * 14 12 11 16 16 C 1.53003 * 109.47040 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47081 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47069 * 179.97438 * 17 16 15 19 19 C 1.35901 * 116.99617 * 180.02562 * 18 17 16 20 20 C 1.38732 * 120.05887 * 359.73124 * 19 18 17 21 21 C 1.38150 * 119.94025 * 179.74438 * 20 19 18 22 22 C 1.38258 * 120.05813 * 0.50763 * 21 20 19 23 23 C 1.38262 * 120.11247 * 359.76568 * 22 21 20 24 24 C 1.38144 * 120.05829 * 359.97438 * 23 22 21 25 25 C 1.47018 * 125.64999 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 28 28 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 29 29 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 30 30 H 1.09000 * 111.00165 * 204.88167 * 11 10 9 31 31 H 1.08994 * 109.47041 * 299.99697 * 15 14 12 32 32 H 1.08997 * 109.46714 * 59.99917 * 15 14 12 33 33 H 1.08997 * 109.47280 * 300.00373 * 16 15 14 34 34 H 1.09003 * 109.46578 * 59.99938 * 16 15 14 35 35 H 1.08997 * 109.47406 * 300.00342 * 17 16 15 36 36 H 1.09004 * 109.46920 * 59.99929 * 17 16 15 37 37 H 1.07996 * 120.02744 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.96607 * 180.22914 * 21 20 19 39 39 H 1.08002 * 119.94482 * 179.75140 * 22 21 20 40 40 H 1.08009 * 119.97239 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.03340 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.88241 * 298.32312 * 25 9 7 43 43 H 1.09000 * 109.88049 * 59.33441 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4016 -3.9319 0.6138 12 6 0.7807 -4.7551 0.0310 13 1 0.5484 -5.1034 -0.9754 14 8 1.1056 -5.8535 0.8853 15 6 1.7431 -6.9426 0.2148 16 6 2.0437 -8.0553 1.2210 17 6 2.7257 -9.2216 0.5030 18 8 3.0070 -10.2606 1.4429 19 6 3.6171 -11.3767 0.9644 20 6 3.9335 -11.4722 -0.3830 21 6 4.5585 -12.6057 -0.8658 22 6 4.8592 -13.6487 -0.0095 23 6 4.5399 -13.5582 1.3327 24 6 3.9197 -12.4248 1.8216 25 6 1.9317 -3.7275 0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5993 -1.7584 0.6159 28 1 -0.5275 -2.4875 -1.0175 29 1 -0.3519 -3.8970 1.7021 30 1 -1.3593 -4.3323 0.2812 31 1 1.0842 -7.3252 -0.5645 32 1 2.6746 -6.5976 -0.2340 33 1 2.7028 -7.6724 2.0001 34 1 1.1124 -8.4002 1.6701 35 1 2.0663 -9.6044 -0.2759 36 1 3.6570 -8.8768 0.0534 37 1 3.6947 -10.6597 -1.0531 38 1 4.8083 -12.6790 -1.9140 39 1 5.3443 -14.5356 -0.3897 40 1 4.7755 -14.3745 1.9996 41 1 3.6709 -12.3544 2.8701 42 1 2.5283 -3.8651 -0.9002 43 1 2.5602 -3.8492 0.8838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205105743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:28 Heat of formation + Delta-G solvation = -35.582279 kcal Electronic energy + Delta-G solvation = -21943.048303 eV Core-core repulsion = 18568.349379 eV Total energy + Delta-G solvation = -3374.698924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.38829 -38.50269 -37.74886 -36.06749 -33.21197 -31.98617 -31.27732 -29.99209 -29.15523 -27.18672 -25.91538 -24.26664 -23.12488 -22.37580 -21.44286 -20.16071 -20.11215 -18.56448 -17.01013 -16.77418 -16.60594 -16.22406 -15.90543 -15.15108 -14.82346 -14.69856 -14.31222 -14.04619 -13.77604 -13.49139 -13.30773 -13.15308 -12.44852 -12.23969 -12.04148 -11.91282 -11.71613 -11.58789 -11.33150 -11.13296 -11.00773 -10.96795 -10.76689 -10.71543 -10.28608 -10.13993 -9.77401 -9.54703 -9.34085 -9.14420 -8.65317 -8.51633 -6.84406 -5.65467 -3.07489 1.00345 1.12726 2.76568 3.41132 3.44871 3.46505 3.46861 3.96524 4.47237 4.50030 4.56547 4.63802 4.79101 4.81423 4.94337 5.05395 5.12618 5.16287 5.22747 5.32333 5.39819 5.42625 5.49191 5.51402 5.67087 5.74344 5.83724 5.92305 5.94000 6.02612 6.07924 6.20039 6.34200 6.45251 6.52222 6.58575 6.64405 6.71544 7.12837 7.48401 7.60686 7.61976 7.84754 8.35410 9.21443 9.82138 10.46578 11.38619 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038388 B = 0.002106 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.227129 B =13289.341385 C =13617.944044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.152 3.848 11 C -0.137 4.137 12 C 0.076 3.924 13 H 0.063 0.937 14 O -0.375 6.375 15 C 0.066 3.934 16 C -0.118 4.118 17 C 0.064 3.936 18 O -0.313 6.313 19 C 0.133 3.867 20 C -0.210 4.210 21 C -0.080 4.080 22 C -0.163 4.163 23 C -0.082 4.082 24 C -0.155 4.155 25 C 0.116 3.884 26 H 0.253 0.747 27 H 0.111 0.889 28 H 0.014 0.986 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.019 0.981 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 -25.731 -0.487 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.027 3.973 11 C -0.176 4.176 12 C 0.018 3.982 13 H 0.081 0.919 14 O -0.294 6.294 15 C -0.011 4.011 16 C -0.156 4.156 17 C -0.011 4.011 18 O -0.226 6.226 19 C 0.088 3.912 20 C -0.229 4.229 21 C -0.099 4.099 22 C -0.181 4.181 23 C -0.100 4.100 24 C -0.173 4.173 25 C -0.010 4.010 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.037 0.963 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.599 -25.437 -0.099 26.047 hybrid contribution 0.629 0.833 -0.679 1.245 sum 6.229 -24.605 -0.778 25.393 Atomic orbital electron populations 1.69764 1.04899 1.24957 1.57592 1.24807 0.95774 0.97761 1.02409 0.86117 0.78377 0.82890 0.77900 1.21227 1.21524 1.21108 1.19043 0.90507 0.82366 1.43167 0.90508 1.44380 1.01972 0.99573 1.86992 1.21973 0.84786 0.92213 0.98303 1.23195 0.95172 0.97827 1.01393 1.23297 0.96523 0.85642 0.92739 0.91886 1.87908 1.79008 1.26554 1.35940 1.22208 0.96986 0.87621 0.94262 1.21373 1.02234 0.92670 0.99297 1.22684 1.00055 0.86816 0.91593 1.86060 1.73801 1.24836 1.37922 1.19069 0.92912 0.86964 0.92302 1.21329 1.06058 1.00859 0.94664 1.20975 0.96354 0.92756 0.99767 1.21069 1.03645 0.99544 0.93854 1.20980 0.96595 0.96803 0.95604 1.20490 1.04001 0.92825 0.99998 1.21709 0.94394 0.86679 0.98229 0.93615 0.87117 0.96826 0.91110 0.91958 0.93412 0.93142 0.89805 0.89964 0.91728 0.91629 0.85351 0.85800 0.85979 0.85405 0.85154 0.96297 0.94887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.09 55.49 0.56 -26.57 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.34 10.27 -15.06 -0.15 -6.49 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.95 3.39 -170.07 -0.58 -16.53 16 10 C 0.15 3.77 5.89 -2.53 -0.01 3.75 16 11 C -0.14 -2.74 6.82 -24.44 -0.17 -2.91 16 12 C 0.08 1.41 3.41 -24.76 -0.08 1.33 16 13 H 0.06 1.07 7.89 -51.93 -0.41 0.66 16 14 O -0.38 -6.36 10.08 -35.23 -0.36 -6.72 16 15 C 0.07 0.84 5.81 37.16 0.22 1.05 16 16 C -0.12 -1.30 5.95 -26.73 -0.16 -1.46 16 17 C 0.06 0.60 4.74 37.15 0.18 0.78 16 18 O -0.31 -3.52 10.14 -19.43 -0.20 -3.72 16 19 C 0.13 1.39 6.69 -39.21 -0.26 1.12 16 20 C -0.21 -1.91 9.04 -39.43 -0.36 -2.27 16 21 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 22 C -0.16 -1.21 10.04 -39.57 -0.40 -1.60 16 23 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 24 C -0.15 -1.43 9.99 -39.43 -0.39 -1.82 16 25 C 0.12 2.56 7.01 -3.07 -0.02 2.54 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.11 3.06 5.87 -51.93 -0.30 2.76 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 36 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 37 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -31.68 352.72 -9.66 -41.35 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.88 Total: -1.87 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.51 Total: -8.49 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.02 Total: -43.10 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.55 Total: -10.44 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.68 -9.66 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205105743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.766 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds