Wall clock time and date at job start Tue Mar 31 2020 08:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46977 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99939 * 3 2 1 7 7 C 1.38815 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 359.95842 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 O 1.42893 * 110.84950 * 153.69922 * 12 11 10 15 15 C 1.42908 * 113.99673 * 155.08534 * 14 12 11 16 16 C 1.53003 * 109.47040 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47081 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47069 * 179.97438 * 17 16 15 19 19 C 1.35901 * 116.99617 * 180.02562 * 18 17 16 20 20 C 1.38732 * 120.05887 * 359.73124 * 19 18 17 21 21 C 1.38150 * 119.94025 * 179.74438 * 20 19 18 22 22 C 1.38258 * 120.05813 * 0.50763 * 21 20 19 23 23 C 1.38262 * 120.11247 * 359.76568 * 22 21 20 24 24 C 1.38144 * 120.05829 * 359.97438 * 23 22 21 25 25 C 1.47018 * 125.64999 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 28 28 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 29 29 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 30 30 H 1.09000 * 111.00165 * 204.88167 * 11 10 9 31 31 H 1.08994 * 109.47041 * 299.99697 * 15 14 12 32 32 H 1.08997 * 109.46714 * 59.99917 * 15 14 12 33 33 H 1.08997 * 109.47280 * 300.00373 * 16 15 14 34 34 H 1.09003 * 109.46578 * 59.99938 * 16 15 14 35 35 H 1.08997 * 109.47406 * 300.00342 * 17 16 15 36 36 H 1.09004 * 109.46920 * 59.99929 * 17 16 15 37 37 H 1.07996 * 120.02744 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.96607 * 180.22914 * 21 20 19 39 39 H 1.08002 * 119.94482 * 179.75140 * 22 21 20 40 40 H 1.08009 * 119.97239 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.03340 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.88241 * 298.32312 * 25 9 7 43 43 H 1.09000 * 109.88049 * 59.33441 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4016 -3.9319 0.6138 12 6 0.7807 -4.7551 0.0310 13 1 0.5484 -5.1034 -0.9754 14 8 1.1056 -5.8535 0.8853 15 6 1.7431 -6.9426 0.2148 16 6 2.0437 -8.0553 1.2210 17 6 2.7257 -9.2216 0.5030 18 8 3.0070 -10.2606 1.4429 19 6 3.6171 -11.3767 0.9644 20 6 3.9335 -11.4722 -0.3830 21 6 4.5585 -12.6057 -0.8658 22 6 4.8592 -13.6487 -0.0095 23 6 4.5399 -13.5582 1.3327 24 6 3.9197 -12.4248 1.8216 25 6 1.9317 -3.7275 0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5993 -1.7584 0.6159 28 1 -0.5275 -2.4875 -1.0175 29 1 -0.3519 -3.8970 1.7021 30 1 -1.3593 -4.3323 0.2812 31 1 1.0842 -7.3252 -0.5645 32 1 2.6746 -6.5976 -0.2340 33 1 2.7028 -7.6724 2.0001 34 1 1.1124 -8.4002 1.6701 35 1 2.0663 -9.6044 -0.2759 36 1 3.6570 -8.8768 0.0534 37 1 3.6947 -10.6597 -1.0531 38 1 4.8083 -12.6790 -1.9140 39 1 5.3443 -14.5356 -0.3897 40 1 4.7755 -14.3745 1.9996 41 1 3.6709 -12.3544 2.8701 42 1 2.5283 -3.8651 -0.9002 43 1 2.5602 -3.8492 0.8838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205105743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:27 Heat of formation + Delta-G solvation = -53.413667 kcal Electronic energy + Delta-G solvation = -21943.821530 eV Core-core repulsion = 18568.349379 eV Total energy + Delta-G solvation = -3375.472151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06676 -39.94381 -38.48787 -37.63218 -34.55993 -33.59882 -31.89655 -31.11084 -30.58411 -28.88800 -27.02460 -26.08448 -23.83730 -23.08001 -22.33387 -22.01079 -21.64903 -19.25742 -18.98318 -18.01111 -17.43105 -17.00002 -16.74917 -16.63712 -16.30962 -15.86612 -15.50403 -15.32482 -14.86588 -14.39869 -14.30867 -14.25009 -14.13860 -13.59672 -13.33818 -13.09924 -12.95259 -12.81958 -12.66296 -12.46354 -12.39483 -12.22580 -12.06593 -11.97323 -11.76868 -11.68444 -11.62701 -11.32661 -10.76451 -10.49864 -9.94480 -9.17341 -8.92897 -7.79600 -5.25052 0.40057 0.49701 1.46095 1.49846 1.56306 1.96950 2.47826 2.83483 2.85709 3.30708 3.69639 3.79447 3.84240 3.87024 3.97477 4.03292 4.07599 4.15202 4.20095 4.28354 4.35936 4.38716 4.46282 4.51403 4.56871 4.63783 4.75679 4.77817 4.94610 4.99691 5.00883 5.04972 5.09854 5.14579 5.37649 5.43019 5.49364 5.59459 5.61451 5.76533 5.87539 6.25690 6.32686 6.45166 7.07832 7.74209 8.37770 9.22287 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038388 B = 0.002106 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.227129 B =13289.341385 C =13617.944044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.985 3.015 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.126 4.126 12 C 0.094 3.906 13 H 0.088 0.912 14 O -0.389 6.389 15 C 0.060 3.940 16 C -0.111 4.111 17 C 0.067 3.933 18 O -0.333 6.333 19 C 0.107 3.893 20 C -0.221 4.221 21 C -0.088 4.088 22 C -0.165 4.165 23 C -0.084 4.084 24 C -0.173 4.173 25 C 0.112 3.888 26 H 0.249 0.751 27 H 0.077 0.923 28 H -0.002 1.002 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.028 0.972 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -27.605 -1.406 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.812 3.188 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.353 5.353 10 C 0.029 3.971 11 C -0.164 4.164 12 C 0.035 3.965 13 H 0.106 0.894 14 O -0.308 6.308 15 C -0.016 4.016 16 C -0.148 4.148 17 C -0.008 4.008 18 O -0.247 6.247 19 C 0.062 3.938 20 C -0.240 4.240 21 C -0.105 4.105 22 C -0.183 4.183 23 C -0.102 4.102 24 C -0.191 4.191 25 C -0.014 4.014 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.016 0.984 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.150 0.850 42 H 0.046 0.954 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.523 -27.352 -1.017 28.138 hybrid contribution 0.401 1.304 -0.386 1.418 sum 6.924 -26.049 -1.402 26.990 Atomic orbital electron populations 1.70018 1.06187 1.25317 1.58248 1.25693 0.96764 1.01100 1.02432 0.85066 0.77110 0.78417 0.78195 1.20275 1.21662 1.20370 1.19419 0.91013 0.83712 1.43156 0.90282 1.44698 1.02890 1.00712 1.87023 1.21761 0.84052 0.94274 0.97044 1.23011 0.97489 0.95336 1.00580 1.23013 0.94042 0.85452 0.93944 0.89422 1.87883 1.79440 1.26978 1.36512 1.22460 0.97509 0.86658 0.94980 1.21265 1.01965 0.92807 0.98799 1.22663 1.00660 0.86106 0.91378 1.86008 1.74382 1.25486 1.38849 1.19343 0.94102 0.87083 0.93264 1.21536 1.06313 1.01779 0.94323 1.21322 0.95773 0.92402 1.01049 1.21447 1.02945 1.00217 0.93711 1.21313 0.95747 0.96810 0.96350 1.20732 1.04721 0.93418 1.00256 1.21885 0.95681 0.85848 0.98004 0.94116 0.90473 0.98380 0.91985 0.88837 0.91067 0.92500 0.91110 0.90285 0.90161 0.90768 0.84373 0.83672 0.83573 0.83075 0.85036 0.95387 0.95859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.01 10.09 21.65 0.22 -56.79 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.24 -14.09 10.27 84.03 0.86 -13.23 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -33.53 3.39 -691.97 -2.35 -35.88 16 10 C 0.15 7.73 5.89 86.86 0.51 8.25 16 11 C -0.13 -4.91 6.82 32.08 0.22 -4.69 16 12 C 0.09 3.32 3.41 31.87 0.11 3.43 16 13 H 0.09 2.70 7.89 -2.39 -0.02 2.69 16 14 O -0.39 -12.48 10.08 -148.98 -1.50 -13.98 16 15 C 0.06 1.38 5.81 71.98 0.42 1.80 16 16 C -0.11 -2.30 5.95 30.59 0.18 -2.12 16 17 C 0.07 1.17 4.74 71.98 0.34 1.52 16 18 O -0.33 -7.36 10.14 -92.43 -0.94 -8.29 16 19 C 0.11 2.16 6.69 22.51 0.15 2.31 16 20 C -0.22 -3.71 9.04 22.37 0.20 -3.50 16 21 C -0.09 -1.20 10.04 22.25 0.22 -0.97 16 22 C -0.17 -2.06 10.04 22.28 0.22 -1.84 16 23 C -0.08 -1.15 10.04 22.25 0.22 -0.92 16 24 C -0.17 -3.10 9.99 22.37 0.22 -2.87 16 25 C 0.11 4.84 7.01 86.73 0.61 5.45 16 26 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.08 4.41 5.87 -2.39 -0.01 4.40 16 28 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.14 7.65 -2.39 -0.02 1.13 16 36 H 0.07 1.16 7.67 -2.38 -0.02 1.14 16 37 H 0.14 1.89 6.30 -2.91 -0.02 1.88 16 38 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.02 1.05 8.05 -2.39 -0.02 1.03 16 Total: -1.00 -69.18 352.72 3.39 -65.78 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.97 Total: 11.83 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.96 Total: -10.81 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -2.13 Total: -92.67 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -2.44 Total: -22.28 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -69.18 3.39 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205105743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.369 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds