Wall clock time and date at job start Tue Mar 31 2020 08:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00435 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00620 * 3 2 1 5 5 H 1.48503 * 109.46590 * 30.00650 * 3 2 1 6 6 H 1.48496 * 109.47162 * 150.00152 * 3 2 1 7 7 C 1.37884 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99715 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00186 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99925 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47007 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.50500 * 305.08648 * 12 11 10 14 14 C 1.53098 * 109.50809 * 184.99713 * 12 11 10 15 15 N 1.47016 * 109.25650 * 183.17122 * 14 12 11 16 16 C 1.46904 * 110.99833 * 182.39270 * 15 14 12 17 17 C 1.50704 * 109.47003 * 302.41729 * 16 15 14 18 18 C 1.38240 * 119.99440 * 269.72433 * 17 16 15 19 19 C 1.38229 * 119.99637 * 179.78950 * 18 17 16 20 20 C 1.38235 * 120.00370 * 0.46316 * 19 18 17 21 21 C 1.38234 * 119.99548 * 359.76775 * 20 19 18 22 22 C 1.38229 * 120.00571 * 89.99817 * 17 16 15 23 23 C 1.47015 * 110.75267 * 58.61888 * 15 14 12 24 24 C 1.53095 * 109.25739 * 301.37969 * 23 15 14 25 25 O 1.43015 * 109.54407 * 65.14952 * 12 11 10 26 26 H 0.96997 * 119.99487 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47388 * 60.00131 * 9 7 2 28 28 H 1.09000 * 109.47164 * 300.00693 * 9 7 2 29 29 H 1.08998 * 109.47422 * 59.99880 * 11 10 9 30 30 H 1.09001 * 109.46630 * 299.99729 * 11 10 9 31 31 H 1.09000 * 109.50481 * 63.24095 * 14 12 11 32 32 H 1.08995 * 109.54381 * 303.12925 * 14 12 11 33 33 H 1.09007 * 109.46938 * 62.40707 * 16 15 14 34 34 H 1.08996 * 109.47276 * 182.41083 * 16 15 14 35 35 H 1.08006 * 119.99719 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.99711 * 180.24803 * 19 18 17 37 37 H 1.08002 * 120.00351 * 179.79040 * 20 19 18 38 38 H 1.08003 * 119.99825 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.99865 * 359.97438 * 22 17 16 40 40 H 1.08994 * 109.50352 * 181.44471 * 23 15 14 41 41 H 1.08995 * 109.50726 * 61.31950 * 23 15 14 42 42 H 1.09002 * 109.50646 * 176.78576 * 24 23 15 43 43 H 1.09003 * 109.50955 * 296.87129 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6477 -5.9563 -0.0017 13 1 3.3225 -5.7950 -0.8425 14 6 1.9940 -7.3349 -0.1280 15 7 3.0325 -8.3728 -0.0516 16 6 2.4527 -9.7113 -0.2258 17 6 1.3945 -9.9406 0.8224 18 6 1.7359 -10.5053 2.0372 19 6 0.7660 -10.7117 3.0002 20 6 -0.5469 -10.3623 2.7451 21 6 -0.8890 -9.8020 1.5286 22 6 0.0816 -9.5916 0.5671 23 6 3.7702 -8.2791 1.2165 24 6 4.4062 -6.8911 1.3294 25 8 3.3866 -5.8940 1.2212 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 0.9450 -4.9823 -0.8913 30 1 0.9445 -4.9827 0.8887 31 1 1.4777 -7.4065 -1.0853 32 1 1.2790 -7.4750 0.6826 33 1 2.0050 -9.7872 -1.2167 34 1 3.2356 -10.4626 -0.1223 35 1 2.7609 -10.7824 2.2348 36 1 1.0334 -11.1491 3.9508 37 1 -1.3052 -10.5266 3.4963 38 1 -1.9147 -9.5286 1.3294 39 1 -0.1858 -9.1542 -0.3835 40 1 4.5503 -9.0399 1.2408 41 1 3.0841 -8.4339 2.0491 42 1 4.9064 -6.7971 2.2933 43 1 5.1326 -6.7572 0.5278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:10 Heat of formation + Delta-G solvation = -61.505164 kcal Electronic energy + Delta-G solvation = -23190.834029 eV Core-core repulsion = 19815.011004 eV Total energy + Delta-G solvation = -3375.823025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35647 -38.86198 -36.62149 -35.71383 -32.80522 -31.84695 -31.61416 -31.07314 -28.44012 -27.39805 -25.71108 -24.35583 -22.82371 -22.30831 -22.11441 -21.27042 -20.16803 -17.05486 -16.54941 -16.44656 -16.16340 -15.77570 -15.53033 -15.22468 -14.93954 -14.78349 -14.60911 -14.11029 -13.97165 -13.75477 -13.67033 -12.95453 -12.90699 -12.66030 -12.16055 -12.08090 -11.61760 -11.49614 -11.44412 -11.27436 -11.19211 -10.84379 -10.74984 -10.67839 -10.32369 -9.92298 -9.46410 -9.13443 -9.06244 -9.01133 -8.79623 -8.53247 -8.13419 -6.07116 -4.08213 1.07483 1.15875 3.33656 3.38202 3.44013 3.46064 3.75880 3.96724 4.36594 4.51459 4.52038 4.69477 4.75920 4.87631 4.92080 4.96269 5.13205 5.21981 5.24964 5.29398 5.32869 5.40846 5.45721 5.52756 5.55566 5.66445 5.75336 5.77563 5.79092 5.89168 6.01970 6.09940 6.20012 6.27434 6.29881 6.32805 6.75076 6.76091 6.78537 7.13042 7.44190 7.47627 7.84137 8.19306 8.61801 9.05366 9.56308 11.04603 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023237 B = 0.003137 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.666100 B = 8924.645002 C = 9548.461498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.387 6.387 11 C 0.073 3.927 12 C 0.099 3.901 13 H 0.072 0.928 14 C 0.022 3.978 15 N -0.523 5.523 16 C 0.092 3.908 17 C -0.123 4.123 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.107 4.107 23 C 0.012 3.988 24 C 0.062 3.938 25 O -0.365 6.365 26 H 0.263 0.737 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -24.873 2.546 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.307 6.307 11 C -0.005 4.005 12 C 0.041 3.959 13 H 0.090 0.910 14 C -0.106 4.106 15 N -0.246 5.246 16 C -0.036 4.036 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.140 4.140 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.016 4.016 25 O -0.283 6.283 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.504 -24.477 2.289 24.711 hybrid contribution -0.616 0.433 0.553 0.934 sum 1.888 -24.044 2.842 24.285 Atomic orbital electron populations 1.69967 1.06104 1.27100 1.50752 1.24952 0.94985 0.99424 0.95190 0.86325 0.79705 0.82208 0.78199 1.20477 1.21105 1.19583 1.21068 0.94135 0.89320 1.50564 0.91483 1.20214 0.88787 0.83603 0.95347 1.87906 1.35137 1.12468 1.95147 1.22149 0.93255 0.85402 0.99743 1.22155 0.93647 0.92165 0.87951 0.91010 1.22802 0.93800 0.91620 1.02387 1.62614 1.25432 1.02642 1.33866 1.21291 0.94481 0.90848 0.96937 1.20664 0.95595 0.99400 0.96849 1.21058 0.99259 0.99117 0.93405 1.21151 0.93312 1.00330 0.99176 1.21184 0.96469 0.98978 0.97155 1.21197 0.99579 0.99064 0.93887 1.21124 0.92513 0.99318 0.99599 1.22907 0.98340 0.99291 0.91054 1.22615 0.90595 0.86139 1.02225 1.88155 1.48756 1.52978 1.38431 0.92702 0.97736 0.97665 0.92996 0.93845 0.89608 0.92931 0.89553 0.89736 0.86285 0.86144 0.86130 0.85932 0.86004 0.89975 0.93293 0.88691 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -15.59 9.43 -34.44 -0.32 -15.91 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.54 5.69 36.00 0.20 5.75 16 10 O -0.39 -9.94 10.29 -39.73 -0.41 -10.35 16 11 C 0.07 1.44 5.61 37.16 0.21 1.65 16 12 C 0.10 1.67 3.08 -26.68 -0.08 1.59 16 13 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 14 C 0.02 0.29 4.13 -3.71 -0.02 0.27 16 15 N -0.52 -5.98 4.94 -235.75 -1.16 -7.15 16 16 C 0.09 0.84 5.58 -4.97 -0.03 0.81 16 17 C -0.12 -1.20 4.01 -104.62 -0.42 -1.62 16 18 C -0.11 -1.02 8.05 -39.58 -0.32 -1.34 16 19 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 22 C -0.11 -1.06 7.93 -39.59 -0.31 -1.38 16 23 C 0.01 0.14 5.14 -3.71 -0.02 0.12 16 24 C 0.06 0.81 7.01 37.21 0.26 1.07 16 25 O -0.36 -6.58 10.44 -39.73 -0.41 -6.99 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 27 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.73 6.22 -51.93 -0.32 0.41 16 33 H 0.09 0.72 8.09 -51.92 -0.42 0.30 16 34 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 35 H 0.12 0.92 8.05 -52.48 -0.42 0.50 16 36 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.09 8.02 -52.49 -0.42 0.67 16 40 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 41 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -33.74 349.39 -10.10 -43.84 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.95 Total: -3.23 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.14 Total: -11.99 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: -0.43 Total: -33.81 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.82 Total: -17.34 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.74 -10.10 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.670 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds