Wall clock time and date at job start Tue Mar 31 2020 08:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00435 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00620 * 3 2 1 5 5 H 1.48503 * 109.46590 * 30.00650 * 3 2 1 6 6 H 1.48496 * 109.47162 * 150.00152 * 3 2 1 7 7 C 1.37884 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99715 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00186 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99925 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47007 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.50500 * 305.08648 * 12 11 10 14 14 C 1.53098 * 109.50809 * 184.99713 * 12 11 10 15 15 N 1.47016 * 109.25650 * 183.17122 * 14 12 11 16 16 C 1.46904 * 110.99833 * 182.39270 * 15 14 12 17 17 C 1.50704 * 109.47003 * 302.41729 * 16 15 14 18 18 C 1.38240 * 119.99440 * 269.72433 * 17 16 15 19 19 C 1.38229 * 119.99637 * 179.78950 * 18 17 16 20 20 C 1.38235 * 120.00370 * 0.46316 * 19 18 17 21 21 C 1.38234 * 119.99548 * 359.76775 * 20 19 18 22 22 C 1.38229 * 120.00571 * 89.99817 * 17 16 15 23 23 C 1.47015 * 110.75267 * 58.61888 * 15 14 12 24 24 C 1.53095 * 109.25739 * 301.37969 * 23 15 14 25 25 O 1.43015 * 109.54407 * 65.14952 * 12 11 10 26 26 H 0.96997 * 119.99487 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47388 * 60.00131 * 9 7 2 28 28 H 1.09000 * 109.47164 * 300.00693 * 9 7 2 29 29 H 1.08998 * 109.47422 * 59.99880 * 11 10 9 30 30 H 1.09001 * 109.46630 * 299.99729 * 11 10 9 31 31 H 1.09000 * 109.50481 * 63.24095 * 14 12 11 32 32 H 1.08995 * 109.54381 * 303.12925 * 14 12 11 33 33 H 1.09007 * 109.46938 * 62.40707 * 16 15 14 34 34 H 1.08996 * 109.47276 * 182.41083 * 16 15 14 35 35 H 1.08006 * 119.99719 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.99711 * 180.24803 * 19 18 17 37 37 H 1.08002 * 120.00351 * 179.79040 * 20 19 18 38 38 H 1.08003 * 119.99825 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.99865 * 359.97438 * 22 17 16 40 40 H 1.08994 * 109.50352 * 181.44471 * 23 15 14 41 41 H 1.08995 * 109.50726 * 61.31950 * 23 15 14 42 42 H 1.09002 * 109.50646 * 176.78576 * 24 23 15 43 43 H 1.09003 * 109.50955 * 296.87129 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6477 -5.9563 -0.0017 13 1 3.3225 -5.7950 -0.8425 14 6 1.9940 -7.3349 -0.1280 15 7 3.0325 -8.3728 -0.0516 16 6 2.4527 -9.7113 -0.2258 17 6 1.3945 -9.9406 0.8224 18 6 1.7359 -10.5053 2.0372 19 6 0.7660 -10.7117 3.0002 20 6 -0.5469 -10.3623 2.7451 21 6 -0.8890 -9.8020 1.5286 22 6 0.0816 -9.5916 0.5671 23 6 3.7702 -8.2791 1.2165 24 6 4.4062 -6.8911 1.3294 25 8 3.3866 -5.8940 1.2212 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 0.9450 -4.9823 -0.8913 30 1 0.9445 -4.9827 0.8887 31 1 1.4777 -7.4065 -1.0853 32 1 1.2790 -7.4750 0.6826 33 1 2.0050 -9.7872 -1.2167 34 1 3.2356 -10.4626 -0.1223 35 1 2.7609 -10.7824 2.2348 36 1 1.0334 -11.1491 3.9508 37 1 -1.3052 -10.5266 3.4963 38 1 -1.9147 -9.5286 1.3294 39 1 -0.1858 -9.1542 -0.3835 40 1 4.5503 -9.0399 1.2408 41 1 3.0841 -8.4339 2.0491 42 1 4.9064 -6.7971 2.2933 43 1 5.1326 -6.7572 0.5278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:08 Heat of formation + Delta-G solvation = -84.071276 kcal Electronic energy + Delta-G solvation = -23191.812569 eV Core-core repulsion = 19815.011004 eV Total energy + Delta-G solvation = -3376.801565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.26255 -39.83091 -38.43193 -36.79166 -34.98501 -33.17703 -32.40154 -31.81004 -29.81362 -29.06354 -27.07803 -25.29315 -24.49183 -23.66571 -23.16923 -22.22116 -21.17182 -18.70706 -17.79395 -17.74709 -17.51935 -17.10311 -16.64641 -16.30822 -16.22979 -16.03997 -15.75422 -15.61585 -15.53457 -14.81068 -14.58240 -14.32693 -13.72820 -13.69314 -13.49627 -13.36285 -13.06948 -12.86580 -12.79004 -12.68315 -12.34713 -12.22914 -12.22190 -11.93456 -11.79917 -11.48073 -11.32248 -10.91057 -10.64005 -10.29064 -9.82985 -9.73472 -9.43434 -8.33508 -6.46211 0.37580 0.46534 1.39437 1.42904 1.55111 2.33351 2.60949 2.75864 2.90809 3.00026 3.20206 3.80822 3.87274 3.89993 3.98856 4.06364 4.11998 4.13002 4.24379 4.25193 4.37342 4.41889 4.48961 4.50957 4.59128 4.62667 4.75199 4.78396 4.81137 4.84475 4.90514 5.02131 5.09662 5.11704 5.14321 5.51753 5.53086 5.57060 5.59698 5.86405 5.93499 5.93640 6.08633 6.24344 6.50205 6.78506 7.25486 8.79029 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023237 B = 0.003137 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.666100 B = 8924.645002 C = 9548.461498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.406 6.406 11 C 0.064 3.936 12 C 0.105 3.895 13 H 0.065 0.935 14 C 0.036 3.964 15 N -0.526 5.526 16 C 0.095 3.905 17 C -0.132 4.132 18 C -0.116 4.116 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.122 4.122 23 C 0.019 3.981 24 C 0.053 3.947 25 O -0.403 6.403 26 H 0.272 0.728 27 H -0.008 1.008 28 H -0.017 1.017 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.042 0.958 42 H 0.111 0.889 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -25.643 2.556 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.326 6.326 11 C -0.013 4.013 12 C 0.047 3.953 13 H 0.083 0.917 14 C -0.092 4.092 15 N -0.249 5.249 16 C -0.032 4.032 17 C -0.134 4.134 18 C -0.135 4.135 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.141 4.141 23 C -0.109 4.109 24 C -0.023 4.023 25 O -0.322 6.322 26 H 0.081 0.919 27 H 0.010 0.990 28 H 0.001 0.999 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.060 0.940 42 H 0.129 0.871 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.536 -25.287 2.295 25.636 hybrid contribution -0.963 0.577 0.588 1.267 sum 2.574 -24.710 2.883 25.010 Atomic orbital electron populations 1.70068 1.07744 1.28744 1.50325 1.25987 0.96024 1.03413 0.93744 0.85149 0.78292 0.76784 0.78977 1.18998 1.19713 1.19030 1.21383 0.94090 0.90873 1.52571 0.92182 1.19860 0.88601 0.84573 0.93571 1.87855 1.35408 1.14088 1.95202 1.22482 0.94802 0.83722 1.00311 1.22043 0.92760 0.93021 0.87521 0.91743 1.22591 0.93738 0.90076 1.02838 1.62621 1.24929 1.03285 1.34053 1.21369 0.94927 0.89706 0.97187 1.20778 0.95617 0.99696 0.97311 1.21321 1.00189 0.98787 0.93208 1.21464 0.93265 1.00168 1.00021 1.21476 0.97225 0.98771 0.97413 1.21442 1.00211 0.99418 0.94259 1.21316 0.93000 0.99720 1.00027 1.22878 0.98800 0.98571 0.90648 1.22896 0.89774 0.86443 1.03204 1.88088 1.50138 1.55242 1.38761 0.91934 0.99026 0.99889 0.91167 0.94407 0.88142 0.93813 0.88750 0.87755 0.84636 0.84341 0.84638 0.85044 0.85579 0.86906 0.94019 0.87141 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.99 45.46 29.54 68.60 2.03 47.48 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -34.31 9.43 25.60 0.24 -34.07 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 12.36 5.69 71.23 0.41 12.77 16 10 O -0.41 -21.58 10.29 -144.68 -1.49 -23.07 16 11 C 0.06 2.62 5.61 71.98 0.40 3.02 16 12 C 0.10 3.55 3.08 30.63 0.09 3.64 16 13 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 14 C 0.04 0.91 4.13 86.31 0.36 1.27 16 15 N -0.53 -11.00 4.94 -899.78 -4.44 -15.44 16 16 C 0.09 1.50 5.58 85.56 0.48 1.97 16 17 C -0.13 -2.36 4.01 -19.86 -0.08 -2.44 16 18 C -0.12 -1.93 8.05 22.27 0.18 -1.75 16 19 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 20 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 21 C -0.14 -2.53 10.05 22.27 0.22 -2.31 16 22 C -0.12 -2.33 7.93 22.27 0.18 -2.15 16 23 C 0.02 0.38 5.14 86.31 0.44 0.82 16 24 C 0.05 1.35 7.01 72.01 0.50 1.85 16 25 O -0.40 -14.66 10.44 -144.68 -1.51 -16.17 16 26 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.04 1.20 6.22 -2.39 -0.01 1.19 16 33 H 0.09 1.35 8.09 -2.38 -0.02 1.33 16 34 H 0.10 1.26 8.05 -2.39 -0.02 1.24 16 35 H 0.14 1.71 8.05 -2.91 -0.02 1.69 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 39 H 0.13 2.17 8.02 -2.91 -0.02 2.15 16 40 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 41 H 0.04 0.91 6.34 -2.39 -0.02 0.90 16 42 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.39 349.39 0.17 -73.22 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.97 Total: 11.20 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.34 Total: -20.49 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -4.16 Total: -72.17 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -3.00 Total: -39.24 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.39 0.17 -73.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.856 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds