Wall clock time and date at job start Tue Mar 31 2020 08:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48496 * 109.47137 * 270.00376 * 3 2 1 5 5 H 1.48500 * 109.46924 * 30.00415 * 3 2 1 6 6 H 1.48495 * 109.46999 * 150.00244 * 3 2 1 7 7 C 1.37885 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99975 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.46795 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99892 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46906 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.50526 * 54.91655 * 12 11 10 14 14 C 1.53099 * 109.50396 * 175.00252 * 12 11 10 15 15 N 1.47015 * 109.25861 * 176.78636 * 14 12 11 16 16 C 1.46901 * 111.00101 * 177.60759 * 15 14 12 17 17 C 1.50693 * 109.47201 * 169.99821 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99355 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00082 * 0.02562 * 21 20 19 23 23 C 1.47015 * 110.74758 * 301.38051 * 15 14 12 24 24 C 1.53099 * 109.25735 * 58.62041 * 23 15 14 25 25 O 1.43008 * 109.50759 * 294.78147 * 12 11 10 26 26 H 0.97001 * 119.99962 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47543 * 60.00070 * 9 7 2 28 28 H 1.08997 * 109.47561 * 299.99550 * 9 7 2 29 29 H 1.09003 * 109.46957 * 60.00298 * 11 10 9 30 30 H 1.09000 * 109.47290 * 300.00214 * 11 10 9 31 31 H 1.08993 * 109.50784 * 56.84534 * 14 12 11 32 32 H 1.09002 * 109.50715 * 296.71899 * 14 12 11 33 33 H 1.09000 * 109.47084 * 49.99826 * 16 15 14 34 34 H 1.09001 * 109.46701 * 289.99562 * 16 15 14 35 35 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 36 36 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 37 37 H 1.07997 * 120.00460 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99643 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00025 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.50379 * 178.54975 * 23 15 14 41 41 H 1.08994 * 109.51011 * 298.68006 * 23 15 14 42 42 H 1.09005 * 109.50430 * 183.21532 * 24 23 15 43 43 H 1.08991 * 109.51032 * 63.08422 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1795 -3.5854 -0.0027 11 6 1.5649 -4.8755 -0.0032 12 6 2.6479 -5.9563 -0.0036 13 1 3.3226 -5.7957 0.8372 14 6 1.9941 -7.3350 0.1215 15 7 3.0324 -8.3729 0.0431 16 6 2.4527 -9.7116 0.2160 17 6 3.4901 -10.7543 -0.1117 18 6 4.3211 -11.2386 0.8812 19 6 5.2688 -12.1993 0.5818 20 6 5.3893 -12.6718 -0.7117 21 6 4.5616 -12.1839 -1.7057 22 6 3.6139 -11.2232 -1.4062 23 6 3.7693 -8.2777 -1.2254 24 6 4.4053 -6.8895 -1.3370 25 8 3.3851 -5.8932 -1.2274 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5564 -0.8920 28 1 0.6239 -2.5576 0.8880 29 1 0.9445 -4.9820 -0.8931 30 1 0.9450 -4.9831 0.8869 31 1 1.2790 -7.4736 -0.6892 32 1 1.4784 -7.4078 1.0790 33 1 1.5986 -9.8266 -0.4512 34 1 2.1265 -9.8356 1.2487 35 1 4.2266 -10.8700 1.8920 36 1 5.9149 -12.5810 1.3584 37 1 6.1295 -13.4227 -0.9457 38 1 4.6561 -12.5528 -2.7163 39 1 2.9675 -10.8418 -2.1828 40 1 4.5494 -9.0385 -1.2512 41 1 3.0825 -8.4314 -2.0577 42 1 4.9048 -6.7945 -2.3012 43 1 5.1317 -6.7564 -0.5354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:17 Heat of formation + Delta-G solvation = -60.458462 kcal Electronic energy + Delta-G solvation = -22690.373483 eV Core-core repulsion = 19314.595847 eV Total energy + Delta-G solvation = -3375.777636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -40.21303 -39.03175 -36.63263 -35.71166 -32.81592 -32.10256 -31.53068 -31.14121 -28.57062 -27.31098 -25.61794 -24.30441 -22.93066 -22.48258 -22.13513 -21.02849 -20.27087 -17.10602 -16.63751 -16.32839 -16.22729 -15.88092 -15.63262 -15.35423 -14.83909 -14.71288 -14.41803 -14.18111 -13.93891 -13.88459 -13.67068 -13.22713 -12.84469 -12.75267 -12.31618 -12.05637 -11.66203 -11.58008 -11.32154 -11.26861 -11.17717 -10.81054 -10.80059 -10.68804 -10.31160 -9.92475 -9.47135 -9.18820 -9.11342 -9.06666 -8.80200 -8.48981 -8.14032 -6.07539 -4.08606 1.00711 1.11098 3.33579 3.34601 3.38141 3.44077 3.81016 3.95937 4.33556 4.40795 4.53912 4.68316 4.71883 4.81574 4.89697 5.01825 5.05010 5.18978 5.19344 5.28962 5.29331 5.36316 5.39151 5.51359 5.52708 5.67068 5.69920 5.74945 5.75111 5.87483 5.99978 6.08902 6.14847 6.21653 6.29679 6.31935 6.67395 6.76388 6.78609 7.12288 7.43081 7.46837 7.83681 8.18747 8.61127 9.04903 9.55881 11.04145 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044838 B = 0.002469 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.322627 B =11339.523611 C =11526.422792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.387 6.387 11 C 0.072 3.928 12 C 0.099 3.901 13 H 0.073 0.927 14 C 0.026 3.974 15 N -0.529 5.529 16 C 0.092 3.908 17 C -0.082 4.082 18 C -0.098 4.098 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.114 4.114 23 C 0.015 3.985 24 C 0.062 3.938 25 O -0.365 6.365 26 H 0.263 0.737 27 H 0.006 0.994 28 H 0.005 0.995 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.095 0.905 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 -26.844 -0.730 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.306 6.306 11 C -0.006 4.006 12 C 0.041 3.959 13 H 0.091 0.909 14 C -0.102 4.102 15 N -0.254 5.254 16 C -0.035 4.035 17 C -0.082 4.082 18 C -0.117 4.117 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.113 4.113 24 C -0.016 4.016 25 O -0.284 6.284 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.555 -26.451 -0.484 27.513 hybrid contribution -0.511 0.405 -0.514 0.830 sum 7.045 -26.046 -0.998 27.000 Atomic orbital electron populations 1.69966 1.06097 1.27108 1.50755 1.24956 0.94995 0.99442 0.95209 0.86321 0.79656 0.82198 0.78235 1.20461 1.21115 1.19612 1.21063 0.94122 0.89307 1.50544 0.91493 1.20219 0.88782 0.83598 0.95357 1.87910 1.35127 1.12452 1.95148 1.22160 0.93219 0.85422 0.99803 1.22143 0.93709 0.91982 0.88049 0.90883 1.22753 0.93299 0.91818 1.02327 1.62329 1.26272 1.02421 1.34391 1.21122 0.93827 0.86494 1.02054 1.19770 0.97619 0.97208 0.93653 1.21068 0.94942 0.96313 0.99368 1.21178 0.98595 0.97452 0.96734 1.21170 0.99334 1.00144 0.93298 1.21124 0.96111 0.97379 0.99374 1.21115 0.98847 0.97306 0.95954 1.22940 0.98706 0.99443 0.90212 1.22627 0.90608 0.86096 1.02227 1.88151 1.48787 1.53136 1.38308 0.92698 0.97665 0.97706 0.93790 0.92921 0.93614 0.89304 0.93731 0.89518 0.85762 0.86037 0.86196 0.86098 0.86327 0.89361 0.94118 0.88676 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.50 9.43 -34.44 -0.32 -15.83 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.50 5.69 36.00 0.20 5.71 16 10 O -0.39 -9.84 10.29 -39.73 -0.41 -10.24 16 11 C 0.07 1.40 5.60 37.16 0.21 1.61 16 12 C 0.10 1.65 3.09 -26.68 -0.08 1.56 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.03 0.33 4.91 -3.71 -0.02 0.31 16 15 N -0.53 -6.17 4.87 -235.76 -1.15 -7.32 16 16 C 0.09 0.87 5.43 -4.98 -0.03 0.84 16 17 C -0.08 -0.75 4.16 -104.63 -0.43 -1.19 16 18 C -0.10 -0.85 9.70 -39.58 -0.38 -1.24 16 19 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 20 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 21 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 22 C -0.11 -0.97 7.84 -39.58 -0.31 -1.28 16 23 C 0.01 0.17 4.65 -3.71 -0.02 0.16 16 24 C 0.06 0.83 7.01 37.21 0.26 1.09 16 25 O -0.37 -6.52 10.44 -39.73 -0.41 -6.93 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 34 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.09 0.94 5.91 -51.93 -0.31 0.64 16 41 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 352.70 15.07 5.32 5.32 Total: -1.00 -33.31 352.70 -10.19 -43.50 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -7.03 Total: -4.26 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.22 Total: -10.70 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: -0.41 Total: -33.92 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.82 Total: -17.17 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.31 -10.19 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.963 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds