Wall clock time and date at job start Tue Mar 31 2020 08:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48496 * 109.47137 * 270.00376 * 3 2 1 5 5 H 1.48500 * 109.46924 * 30.00415 * 3 2 1 6 6 H 1.48495 * 109.46999 * 150.00244 * 3 2 1 7 7 C 1.37885 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99975 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.46795 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99892 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46906 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.50526 * 54.91655 * 12 11 10 14 14 C 1.53099 * 109.50396 * 175.00252 * 12 11 10 15 15 N 1.47015 * 109.25861 * 176.78636 * 14 12 11 16 16 C 1.46901 * 111.00101 * 177.60759 * 15 14 12 17 17 C 1.50693 * 109.47201 * 169.99821 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99355 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00082 * 0.02562 * 21 20 19 23 23 C 1.47015 * 110.74758 * 301.38051 * 15 14 12 24 24 C 1.53099 * 109.25735 * 58.62041 * 23 15 14 25 25 O 1.43008 * 109.50759 * 294.78147 * 12 11 10 26 26 H 0.97001 * 119.99962 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47543 * 60.00070 * 9 7 2 28 28 H 1.08997 * 109.47561 * 299.99550 * 9 7 2 29 29 H 1.09003 * 109.46957 * 60.00298 * 11 10 9 30 30 H 1.09000 * 109.47290 * 300.00214 * 11 10 9 31 31 H 1.08993 * 109.50784 * 56.84534 * 14 12 11 32 32 H 1.09002 * 109.50715 * 296.71899 * 14 12 11 33 33 H 1.09000 * 109.47084 * 49.99826 * 16 15 14 34 34 H 1.09001 * 109.46701 * 289.99562 * 16 15 14 35 35 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 36 36 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 37 37 H 1.07997 * 120.00460 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99643 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00025 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.50379 * 178.54975 * 23 15 14 41 41 H 1.08994 * 109.51011 * 298.68006 * 23 15 14 42 42 H 1.09005 * 109.50430 * 183.21532 * 24 23 15 43 43 H 1.08991 * 109.51032 * 63.08422 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1795 -3.5854 -0.0027 11 6 1.5649 -4.8755 -0.0032 12 6 2.6479 -5.9563 -0.0036 13 1 3.3226 -5.7957 0.8372 14 6 1.9941 -7.3350 0.1215 15 7 3.0324 -8.3729 0.0431 16 6 2.4527 -9.7116 0.2160 17 6 3.4901 -10.7543 -0.1117 18 6 4.3211 -11.2386 0.8812 19 6 5.2688 -12.1993 0.5818 20 6 5.3893 -12.6718 -0.7117 21 6 4.5616 -12.1839 -1.7057 22 6 3.6139 -11.2232 -1.4062 23 6 3.7693 -8.2777 -1.2254 24 6 4.4053 -6.8895 -1.3370 25 8 3.3851 -5.8932 -1.2274 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5564 -0.8920 28 1 0.6239 -2.5576 0.8880 29 1 0.9445 -4.9820 -0.8931 30 1 0.9450 -4.9831 0.8869 31 1 1.2790 -7.4736 -0.6892 32 1 1.4784 -7.4078 1.0790 33 1 1.5986 -9.8266 -0.4512 34 1 2.1265 -9.8356 1.2487 35 1 4.2266 -10.8700 1.8920 36 1 5.9149 -12.5810 1.3584 37 1 6.1295 -13.4227 -0.9457 38 1 4.6561 -12.5528 -2.7163 39 1 2.9675 -10.8418 -2.1828 40 1 4.5494 -9.0385 -1.2512 41 1 3.0825 -8.4314 -2.0577 42 1 4.9048 -6.7945 -2.3012 43 1 5.1317 -6.7564 -0.5354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:14 Heat of formation + Delta-G solvation = -82.303605 kcal Electronic energy + Delta-G solvation = -22691.320760 eV Core-core repulsion = 19314.595847 eV Total energy + Delta-G solvation = -3376.724913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11210 -39.92387 -38.42589 -36.79491 -34.97807 -33.27993 -32.42383 -31.76120 -29.92035 -29.05825 -26.87835 -25.30118 -24.47199 -23.65823 -23.34399 -21.88489 -21.31042 -18.70131 -17.88437 -17.61892 -17.43603 -17.27615 -16.63943 -16.37072 -16.25512 -16.02283 -15.76945 -15.51360 -15.16608 -15.08635 -14.61735 -14.24788 -13.90157 -13.56769 -13.47855 -13.40234 -13.10041 -12.99577 -12.79992 -12.68520 -12.43542 -12.27492 -12.02214 -11.85981 -11.79279 -11.47034 -11.31311 -10.90151 -10.64502 -10.27281 -9.78807 -9.77664 -9.36058 -8.33068 -6.45404 0.39810 0.52094 1.39578 1.42908 1.54985 2.33383 2.55496 2.73979 2.98803 3.00435 3.21327 3.71242 3.88631 3.91074 3.97039 4.05787 4.12683 4.18268 4.20369 4.32103 4.35792 4.42296 4.47388 4.49686 4.61371 4.61954 4.70258 4.76495 4.79913 4.82547 4.87048 4.97670 5.11024 5.15894 5.18221 5.53664 5.56230 5.64597 5.68887 5.83553 5.90142 5.94451 6.12693 6.21995 6.51406 6.79822 7.26156 8.79347 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044838 B = 0.002469 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.322627 B =11339.523611 C =11526.422792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.406 6.406 11 C 0.063 3.937 12 C 0.104 3.896 13 H 0.063 0.937 14 C 0.037 3.963 15 N -0.536 5.536 16 C 0.095 3.905 17 C -0.095 4.095 18 C -0.110 4.110 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.123 4.123 23 C 0.025 3.975 24 C 0.056 3.944 25 O -0.400 6.400 26 H 0.272 0.728 27 H -0.015 1.015 28 H -0.008 1.008 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.041 0.959 42 H 0.111 0.889 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 -27.731 -0.702 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.326 6.326 11 C -0.014 4.014 12 C 0.046 3.954 13 H 0.081 0.919 14 C -0.091 4.091 15 N -0.261 5.261 16 C -0.032 4.032 17 C -0.095 4.095 18 C -0.129 4.129 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.103 4.103 24 C -0.021 4.021 25 O -0.319 6.319 26 H 0.080 0.920 27 H 0.002 0.998 28 H 0.010 0.990 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.059 0.941 42 H 0.129 0.871 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.493 -27.377 -0.454 28.667 hybrid contribution -0.790 0.560 -0.540 1.109 sum 7.703 -26.817 -0.994 27.919 Atomic orbital electron populations 1.70064 1.07698 1.28718 1.50383 1.25983 0.96039 1.03405 0.93838 0.85158 0.78359 0.76885 0.78856 1.19319 1.19612 1.18925 1.21376 0.94043 0.90905 1.52432 0.92263 1.19861 0.88587 0.84528 0.93641 1.87858 1.35423 1.14121 1.95227 1.22502 0.94691 0.83578 1.00645 1.22041 0.92849 0.93003 0.87472 0.91858 1.22599 0.93219 0.89935 1.03381 1.62316 1.26105 1.03249 1.34426 1.21142 0.94048 0.85244 1.02724 1.19788 0.98004 0.97598 0.94152 1.21231 0.95291 0.96796 0.99578 1.21448 0.98533 0.97131 0.97515 1.21485 0.99486 1.00261 0.93084 1.21395 0.95753 0.97035 1.00410 1.21242 0.99308 0.97746 0.95870 1.22826 0.98904 0.98246 0.90288 1.22856 0.89825 0.86358 1.03032 1.88089 1.50019 1.55118 1.38711 0.91953 0.99757 0.98983 0.93910 0.90969 0.93483 0.87509 0.93354 0.88624 0.85389 0.84372 0.84182 0.84427 0.86008 0.88229 0.94057 0.87118 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.98 45.41 29.54 68.60 2.03 47.43 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -34.02 9.43 25.60 0.24 -33.78 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.23 5.69 71.23 0.41 12.63 16 10 O -0.41 -21.33 10.29 -144.68 -1.49 -22.82 16 11 C 0.06 2.51 5.60 71.98 0.40 2.91 16 12 C 0.10 3.48 3.09 30.63 0.09 3.57 16 13 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 14 C 0.04 0.90 4.91 86.31 0.42 1.33 16 15 N -0.54 -11.83 4.87 -899.79 -4.38 -16.21 16 16 C 0.09 1.65 5.43 85.55 0.46 2.12 16 17 C -0.10 -1.60 4.16 -19.87 -0.08 -1.68 16 18 C -0.11 -1.75 9.70 22.27 0.22 -1.54 16 19 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 20 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 21 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 22 C -0.12 -1.91 7.84 22.27 0.17 -1.74 16 23 C 0.03 0.55 4.65 86.31 0.40 0.95 16 24 C 0.06 1.48 7.01 72.02 0.50 1.98 16 25 O -0.40 -14.41 10.44 -144.68 -1.51 -15.92 16 26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 27 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 0.81 8.02 -2.39 -0.02 0.79 16 34 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 35 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 38 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.12 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.10 1.98 5.91 -2.39 -0.01 1.96 16 41 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -71.84 352.70 0.27 -71.57 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.96 Total: 9.27 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 4.38 Total: -16.81 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -4.10 Total: -72.72 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -3.00 Total: -38.74 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.84 0.27 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.734 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds