Wall clock time and date at job start Tue Mar 31 2020 08:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47157 * 269.99814 * 3 2 1 5 5 H 1.48502 * 109.47170 * 29.99626 * 3 2 1 6 6 H 1.48502 * 109.47194 * 149.99689 * 3 2 1 7 7 C 1.38810 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00231 * 160.11016 * 7 2 1 9 9 N 1.36946 * 119.99715 * 340.10725 * 7 2 1 10 10 C 1.46502 * 119.99415 * 139.53497 * 9 7 2 11 11 C 1.52990 * 109.47299 * 90.00203 * 10 9 7 12 12 C 1.52993 * 109.47374 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47724 * 179.97438 * 12 11 10 14 14 O 1.43752 * 109.63088 * 294.37014 * 13 12 11 15 15 C 1.44789 * 104.81337 * 215.80329 * 14 13 12 16 16 C 1.54912 * 101.72186 * 36.10184 * 15 14 13 17 17 O 1.43367 * 109.63664 * 174.99765 * 13 12 11 18 18 C 1.46499 * 120.00038 * 319.53133 * 9 7 2 19 19 C 1.50692 * 109.47230 * 268.61645 * 18 9 7 20 20 C 1.38239 * 119.99691 * 263.29301 * 19 18 9 21 21 C 1.38238 * 119.99804 * 179.76880 * 20 19 18 22 22 C 1.38240 * 119.99683 * 0.50230 * 21 20 19 23 23 C 1.38231 * 120.00312 * 359.74680 * 22 21 20 24 24 C 1.38231 * 120.00348 * 83.56284 * 19 18 9 25 25 H 0.97007 * 119.99999 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47297 * 329.99124 * 10 9 7 27 27 H 1.09003 * 109.46606 * 209.99797 * 10 9 7 28 28 H 1.09003 * 109.46960 * 299.99378 * 11 10 9 29 29 H 1.09001 * 109.47827 * 59.99245 * 11 10 9 30 30 H 1.08999 * 109.47587 * 299.99796 * 12 11 10 31 31 H 1.08999 * 109.47316 * 59.99472 * 12 11 10 32 32 H 1.09005 * 109.62564 * 54.60266 * 13 12 11 33 33 H 1.09002 * 110.97640 * 277.99413 * 15 14 13 34 34 H 1.09003 * 111.00972 * 154.22228 * 15 14 13 35 35 H 1.09000 * 110.69688 * 206.04208 * 16 15 14 36 36 H 1.08994 * 110.84540 * 82.90486 * 16 15 14 37 37 H 1.09002 * 109.46749 * 28.61942 * 18 9 7 38 38 H 1.08999 * 109.46754 * 148.61679 * 18 9 7 39 39 H 1.07998 * 120.00230 * 359.97438 * 20 19 18 40 40 H 1.08002 * 120.00334 * 180.23033 * 21 20 19 41 41 H 1.08009 * 119.99772 * 179.72861 * 22 21 20 42 42 H 1.07994 * 120.00099 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99858 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0418 -1.2300 -0.3187 9 7 1.3867 -2.3529 0.4025 10 6 1.6216 -3.6051 -0.3208 11 6 2.8132 -4.3368 0.3000 12 6 3.0582 -5.6448 -0.4549 13 6 4.2502 -6.3763 0.1654 14 8 5.4476 -5.6072 -0.0375 15 6 6.4877 -6.5913 -0.2525 16 6 5.7284 -7.6831 -1.0471 17 8 4.4106 -7.6551 -0.4625 18 6 0.4850 -2.3317 1.5569 19 6 1.2628 -2.6493 2.8078 20 6 1.2781 -3.9397 3.3032 21 6 1.9956 -4.2321 4.4481 22 6 2.6892 -3.2318 5.1034 23 6 2.6696 -1.9403 4.6109 24 6 1.9564 -1.6491 3.4631 25 1 -0.4850 0.8401 -0.0004 26 1 1.8346 -3.3859 -1.3671 27 1 0.7342 -4.2346 -0.2548 28 1 3.7006 -3.7072 0.2341 29 1 2.6002 -4.5559 1.3463 30 1 2.1708 -6.2742 -0.3887 31 1 3.2711 -5.4260 -1.5013 32 1 4.0812 -6.5115 1.2338 33 1 6.8557 -6.9836 0.6955 34 1 7.3035 -6.1749 -0.8434 35 1 6.1934 -8.6583 -0.9024 36 1 5.6851 -7.4320 -2.1069 37 1 0.0363 -1.3426 1.6492 38 1 -0.2999 -3.0753 1.4184 39 1 0.7324 -4.7202 2.7939 40 1 2.0107 -5.2410 4.8331 41 1 3.2461 -3.4593 6.0004 42 1 3.2111 -1.1589 5.1231 43 1 1.9405 -0.6399 3.0788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209306846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:05 Heat of formation + Delta-G solvation = -53.026514 kcal Electronic energy + Delta-G solvation = -23761.778469 eV Core-core repulsion = 20386.323106 eV Total energy + Delta-G solvation = -3375.455363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.29307 -38.56898 -35.98196 -34.96971 -33.59414 -31.53851 -30.63191 -30.19439 -29.27356 -26.50702 -25.49062 -23.56738 -23.06239 -21.83348 -21.43256 -20.53543 -19.96809 -17.23225 -16.86067 -16.64259 -15.95704 -15.94592 -14.93574 -14.73289 -14.45043 -14.22722 -14.03417 -13.72396 -13.51175 -13.03604 -12.80575 -12.77390 -12.69326 -12.53765 -11.91011 -11.84460 -11.56018 -11.29614 -11.03496 -10.92696 -10.75514 -10.53840 -10.43075 -10.29269 -10.27029 -9.99861 -9.87039 -9.68138 -9.50608 -8.48047 -8.22692 -7.92152 -6.53245 -5.80872 -3.40039 2.06969 2.11308 3.34426 3.41694 3.42602 3.46846 4.03967 4.42682 4.47463 4.54697 4.75899 4.93318 5.15600 5.27429 5.31072 5.34879 5.46556 5.48628 5.53867 5.59970 5.66017 5.72192 5.84948 5.95025 6.09788 6.20987 6.26619 6.29557 6.34180 6.52204 6.56829 6.66537 6.77595 6.83966 7.00311 7.10988 7.11329 7.19069 7.24309 7.46142 7.64688 7.77122 7.83827 8.54577 9.18632 9.79217 10.40315 11.19324 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.005304 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.947157 B = 5277.503840 C = 6421.904342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.017 3.983 3 Si 0.891 3.109 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.255 4.255 8 H 0.057 0.943 9 N -0.573 5.573 10 C 0.152 3.848 11 C -0.136 4.136 12 C -0.127 4.127 13 C 0.233 3.767 14 O -0.369 6.369 15 C 0.014 3.986 16 C 0.021 3.979 17 O -0.390 6.390 18 C 0.177 3.823 19 C -0.069 4.069 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.145 4.145 23 C -0.127 4.127 24 C -0.098 4.098 25 H 0.255 0.745 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.072 -12.469 3.383 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.184 4.184 3 Si 0.720 3.280 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.075 0.925 9 N -0.292 5.292 10 C 0.025 3.975 11 C -0.176 4.176 12 C -0.165 4.165 13 C 0.139 3.861 14 O -0.289 6.289 15 C -0.063 4.063 16 C -0.055 4.055 17 O -0.311 6.311 18 C 0.051 3.949 19 C -0.072 4.072 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.163 4.163 23 C -0.146 4.146 24 C -0.117 4.117 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.763 -12.225 3.320 14.857 hybrid contribution 0.820 0.765 0.124 1.128 sum 8.583 -11.460 3.444 14.727 Atomic orbital electron populations 1.70013 1.05573 1.25830 1.51215 1.25225 0.94955 0.98672 0.99553 0.86497 0.79721 0.83802 0.78010 1.21135 1.21403 1.20155 1.18959 0.93525 0.85342 1.40687 0.92487 1.43629 1.53482 1.04346 1.27715 1.20854 0.93803 0.87694 0.95101 1.22199 1.01727 0.94097 0.99604 1.21984 0.95758 0.97836 1.00935 1.24249 0.87167 0.78106 0.96617 1.89346 1.17178 1.29525 1.92851 1.24348 0.92743 0.89220 0.99978 1.24139 0.82867 1.00215 0.98308 1.88881 1.33364 1.35275 1.73591 1.19983 0.90136 1.02534 0.82234 1.21275 0.97102 0.92390 0.96404 1.21004 1.00326 0.96543 0.96409 1.20957 0.98914 0.98285 0.96684 1.20866 1.01569 0.93592 1.00317 1.21077 1.00006 0.96269 0.97208 1.21099 0.96479 0.99938 0.94163 0.93478 0.93368 0.95025 0.91751 0.92139 0.90547 0.91314 0.90094 0.90929 0.87588 0.88648 0.90744 0.88483 0.94857 0.87202 0.87460 0.87515 0.87297 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.85 11.61 55.49 0.64 -24.20 16 2 C 0.02 0.45 4.95 -17.43 -0.09 0.36 16 3 Si 0.89 21.24 29.60 -169.99 -5.03 16.21 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.84 9.43 -15.06 -0.14 -6.98 16 8 H 0.06 1.57 7.90 -52.49 -0.41 1.15 16 9 N -0.57 -13.93 2.39 -174.62 -0.42 -14.35 16 10 C 0.15 3.20 5.71 -4.05 -0.02 3.18 16 11 C -0.14 -2.54 5.43 -26.74 -0.15 -2.69 16 12 C -0.13 -1.99 5.30 -26.74 -0.14 -2.13 16 13 C 0.23 3.44 4.01 37.16 0.15 3.59 16 14 O -0.37 -5.63 10.92 -59.04 -0.64 -6.28 16 15 C 0.01 0.14 7.95 38.17 0.30 0.45 16 16 C 0.02 0.21 8.07 38.17 0.31 0.52 16 17 O -0.39 -5.37 11.22 -59.04 -0.66 -6.04 16 18 C 0.18 4.09 5.45 -5.20 -0.03 4.06 16 19 C -0.07 -1.41 5.21 -104.63 -0.54 -1.96 16 20 C -0.12 -2.23 7.82 -39.58 -0.31 -2.54 16 21 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 22 C -0.14 -2.34 10.05 -39.58 -0.40 -2.73 16 23 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 24 C -0.10 -2.00 9.73 -39.58 -0.39 -2.39 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.05 1.05 8.04 -51.93 -0.42 0.64 16 27 H 0.03 0.63 7.91 -51.93 -0.41 0.22 16 28 H 0.06 1.36 7.85 -51.93 -0.41 0.95 16 29 H 0.06 1.14 5.87 -51.93 -0.30 0.84 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 2.52 5.68 -51.93 -0.29 2.23 16 38 H 0.03 0.73 7.81 -51.93 -0.41 0.33 16 39 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -29.73 352.92 -9.90 -39.63 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.86 Total: 4.13 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -2.24 Total: -14.42 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.23 Total: -38.56 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -1.31 Total: -12.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.73 -9.90 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209306846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.398 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds