Wall clock time and date at job start Tue Mar 31 2020 08:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47157 * 269.99814 * 3 2 1 5 5 H 1.48502 * 109.47170 * 29.99626 * 3 2 1 6 6 H 1.48502 * 109.47194 * 149.99689 * 3 2 1 7 7 C 1.38810 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00231 * 160.11016 * 7 2 1 9 9 N 1.36946 * 119.99715 * 340.10725 * 7 2 1 10 10 C 1.46502 * 119.99415 * 139.53497 * 9 7 2 11 11 C 1.52990 * 109.47299 * 90.00203 * 10 9 7 12 12 C 1.52993 * 109.47374 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47724 * 179.97438 * 12 11 10 14 14 O 1.43752 * 109.63088 * 294.37014 * 13 12 11 15 15 C 1.44789 * 104.81337 * 215.80329 * 14 13 12 16 16 C 1.54912 * 101.72186 * 36.10184 * 15 14 13 17 17 O 1.43367 * 109.63664 * 174.99765 * 13 12 11 18 18 C 1.46499 * 120.00038 * 319.53133 * 9 7 2 19 19 C 1.50692 * 109.47230 * 268.61645 * 18 9 7 20 20 C 1.38239 * 119.99691 * 263.29301 * 19 18 9 21 21 C 1.38238 * 119.99804 * 179.76880 * 20 19 18 22 22 C 1.38240 * 119.99683 * 0.50230 * 21 20 19 23 23 C 1.38231 * 120.00312 * 359.74680 * 22 21 20 24 24 C 1.38231 * 120.00348 * 83.56284 * 19 18 9 25 25 H 0.97007 * 119.99999 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47297 * 329.99124 * 10 9 7 27 27 H 1.09003 * 109.46606 * 209.99797 * 10 9 7 28 28 H 1.09003 * 109.46960 * 299.99378 * 11 10 9 29 29 H 1.09001 * 109.47827 * 59.99245 * 11 10 9 30 30 H 1.08999 * 109.47587 * 299.99796 * 12 11 10 31 31 H 1.08999 * 109.47316 * 59.99472 * 12 11 10 32 32 H 1.09005 * 109.62564 * 54.60266 * 13 12 11 33 33 H 1.09002 * 110.97640 * 277.99413 * 15 14 13 34 34 H 1.09003 * 111.00972 * 154.22228 * 15 14 13 35 35 H 1.09000 * 110.69688 * 206.04208 * 16 15 14 36 36 H 1.08994 * 110.84540 * 82.90486 * 16 15 14 37 37 H 1.09002 * 109.46749 * 28.61942 * 18 9 7 38 38 H 1.08999 * 109.46754 * 148.61679 * 18 9 7 39 39 H 1.07998 * 120.00230 * 359.97438 * 20 19 18 40 40 H 1.08002 * 120.00334 * 180.23033 * 21 20 19 41 41 H 1.08009 * 119.99772 * 179.72861 * 22 21 20 42 42 H 1.07994 * 120.00099 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99858 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0418 -1.2300 -0.3187 9 7 1.3867 -2.3529 0.4025 10 6 1.6216 -3.6051 -0.3208 11 6 2.8132 -4.3368 0.3000 12 6 3.0582 -5.6448 -0.4549 13 6 4.2502 -6.3763 0.1654 14 8 5.4476 -5.6072 -0.0375 15 6 6.4877 -6.5913 -0.2525 16 6 5.7284 -7.6831 -1.0471 17 8 4.4106 -7.6551 -0.4625 18 6 0.4850 -2.3317 1.5569 19 6 1.2628 -2.6493 2.8078 20 6 1.2781 -3.9397 3.3032 21 6 1.9956 -4.2321 4.4481 22 6 2.6892 -3.2318 5.1034 23 6 2.6696 -1.9403 4.6109 24 6 1.9564 -1.6491 3.4631 25 1 -0.4850 0.8401 -0.0004 26 1 1.8346 -3.3859 -1.3671 27 1 0.7342 -4.2346 -0.2548 28 1 3.7006 -3.7072 0.2341 29 1 2.6002 -4.5559 1.3463 30 1 2.1708 -6.2742 -0.3887 31 1 3.2711 -5.4260 -1.5013 32 1 4.0812 -6.5115 1.2338 33 1 6.8557 -6.9836 0.6955 34 1 7.3035 -6.1749 -0.8434 35 1 6.1934 -8.6583 -0.9024 36 1 5.6851 -7.4320 -2.1069 37 1 0.0363 -1.3426 1.6492 38 1 -0.2999 -3.0753 1.4184 39 1 0.7324 -4.7202 2.7939 40 1 2.0107 -5.2410 4.8331 41 1 3.2461 -3.4593 6.0004 42 1 3.2111 -1.1589 5.1231 43 1 1.9405 -0.6399 3.0788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209306846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:01 Heat of formation + Delta-G solvation = -68.797950 kcal Electronic energy + Delta-G solvation = -23762.462370 eV Core-core repulsion = 20386.323106 eV Total energy + Delta-G solvation = -3376.139264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29052 -40.03973 -37.69223 -35.99803 -35.13025 -33.36709 -32.05954 -31.60047 -30.47793 -27.94580 -27.34113 -24.94326 -24.09735 -23.24649 -22.83302 -21.97810 -21.66993 -18.72534 -18.18475 -17.72808 -17.37318 -17.04640 -16.78174 -16.04918 -15.86724 -15.66376 -15.63742 -15.11423 -14.76552 -14.54436 -14.22525 -14.09498 -13.90558 -13.70144 -13.42155 -13.23111 -13.14638 -12.78146 -12.72413 -12.60024 -12.29342 -12.21232 -12.08179 -11.89686 -11.69567 -11.56589 -11.34147 -11.17042 -10.66372 -10.47013 -9.62788 -9.39323 -8.52293 -7.84080 -5.48857 0.66466 0.69337 1.41111 1.44083 1.53529 2.46862 2.51953 2.99900 3.06049 3.25518 3.68627 3.83338 3.95573 4.00971 4.11017 4.15792 4.24237 4.28096 4.33454 4.36113 4.45112 4.53802 4.65103 4.68343 4.73494 4.81182 4.84300 4.88022 4.92365 4.98829 5.04064 5.12569 5.32593 5.34581 5.42523 5.57616 5.62283 5.68814 5.74169 5.79415 6.07359 6.10608 6.32503 6.49866 7.16972 7.83946 8.39421 9.11406 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.005304 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.947157 B = 5277.503840 C = 6421.904342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.024 4.024 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.261 4.261 8 H 0.043 0.957 9 N -0.588 5.588 10 C 0.150 3.850 11 C -0.113 4.113 12 C -0.120 4.120 13 C 0.238 3.762 14 O -0.401 6.401 15 C 0.008 3.992 16 C 0.017 3.983 17 O -0.403 6.403 18 C 0.184 3.816 19 C -0.088 4.088 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.125 4.125 25 H 0.253 0.747 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.130 0.870 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 -14.776 4.959 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.222 4.222 3 Si 0.774 3.226 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.391 4.391 8 H 0.060 0.940 9 N -0.308 5.308 10 C 0.025 3.975 11 C -0.153 4.153 12 C -0.158 4.158 13 C 0.143 3.857 14 O -0.322 6.322 15 C -0.068 4.068 16 C -0.059 4.059 17 O -0.325 6.325 18 C 0.059 3.941 19 C -0.091 4.091 20 C -0.145 4.145 21 C -0.140 4.140 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.144 4.144 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.148 0.852 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.475 -14.558 4.899 18.047 hybrid contribution 0.346 1.380 -0.332 1.461 sum 9.822 -13.178 4.567 17.058 Atomic orbital electron populations 1.70118 1.06684 1.26139 1.52716 1.25785 0.95560 1.01130 0.99755 0.85627 0.78562 0.80541 0.77872 1.20810 1.21286 1.20020 1.19002 0.93006 0.86717 1.40407 0.93970 1.43793 1.53422 1.04697 1.28857 1.20932 0.95391 0.87025 0.94169 1.21853 0.98905 0.94747 0.99784 1.21883 0.97319 0.96536 1.00103 1.24064 0.86652 0.78364 0.96632 1.89320 1.18415 1.31472 1.93037 1.24659 0.92227 0.88592 1.01288 1.24414 0.81383 1.01816 0.98285 1.88856 1.35394 1.34358 1.73845 1.19752 0.90328 1.00619 0.83429 1.20974 0.98041 0.93988 0.96088 1.21134 1.00712 0.95397 0.97257 1.21380 0.97148 1.00163 0.95321 1.21323 1.00576 0.92473 1.00988 1.21318 0.99378 0.98040 0.96107 1.21010 0.98587 0.98716 0.96098 0.93791 0.94971 0.93721 0.94758 0.92023 0.89205 0.91969 0.89739 0.89342 0.85632 0.85475 0.90349 0.92005 0.94590 0.85963 0.83677 0.83672 0.85245 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.51 11.61 21.65 0.25 -53.26 16 2 C -0.02 -1.36 4.95 84.86 0.42 -0.94 16 3 Si 0.95 45.22 29.60 68.60 2.03 47.25 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.26 -14.60 9.43 84.03 0.79 -13.81 16 8 H 0.04 2.45 7.90 -2.92 -0.02 2.42 16 9 N -0.59 -29.73 2.39 -706.37 -1.69 -31.42 16 10 C 0.15 6.51 5.71 86.38 0.49 7.00 16 11 C -0.11 -4.25 5.43 30.59 0.17 -4.08 16 12 C -0.12 -3.69 5.30 30.59 0.16 -3.52 16 13 C 0.24 6.66 4.01 71.98 0.29 6.94 16 14 O -0.40 -11.82 10.92 -126.22 -1.38 -13.20 16 15 C 0.01 0.15 7.95 72.64 0.58 0.72 16 16 C 0.02 0.29 8.07 72.64 0.59 0.88 16 17 O -0.40 -10.23 11.22 -126.22 -1.42 -11.65 16 18 C 0.18 8.87 5.45 85.63 0.47 9.33 16 19 C -0.09 -3.68 5.21 -19.87 -0.10 -3.79 16 20 C -0.13 -4.33 7.82 22.27 0.17 -4.15 16 21 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 22 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 23 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 24 C -0.13 -5.22 9.73 22.27 0.22 -5.00 16 25 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 26 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 27 H 0.04 1.79 7.91 -2.39 -0.02 1.77 16 28 H 0.03 1.48 7.85 -2.39 -0.02 1.46 16 29 H 0.06 2.29 5.87 -2.39 -0.01 2.27 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 3.42 5.68 -2.39 -0.01 3.40 16 38 H 0.04 1.64 7.81 -2.39 -0.02 1.62 16 39 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 42 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 43 H 0.09 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -66.98 352.92 3.68 -63.30 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.97 Total: 20.43 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.91 Total: -21.46 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.43 Total: -84.68 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -2.79 Total: -24.84 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.98 3.68 -63.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209306846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.500 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds