Wall clock time and date at job start Tue Mar 31 2020 07:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48505 * 109.46842 * 265.22178 * 3 2 1 5 5 H 1.48506 * 109.47041 * 25.21596 * 3 2 1 6 6 H 1.48493 * 109.47165 * 145.22170 * 3 2 1 7 7 C 1.37866 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00245 * 354.56569 * 7 2 1 9 9 C 1.50709 * 120.00188 * 174.56078 * 7 2 1 10 10 H 1.08994 * 109.46895 * 356.08138 * 9 7 2 11 11 O 1.42902 * 109.46951 * 236.08351 * 9 7 2 12 12 C 1.42900 * 113.99860 * 90.00250 * 11 9 7 13 13 C 1.53001 * 109.46792 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46936 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47187 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46969 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99936 * 180.02562 * 17 16 15 19 19 O 1.21284 * 120.00036 * 359.97438 * 17 16 15 20 20 C 1.50700 * 109.46860 * 116.08350 * 9 7 2 21 21 C 1.38230 * 119.99868 * 82.40972 * 20 9 7 22 22 C 1.38244 * 119.99495 * 179.80644 * 21 20 9 23 23 C 1.38230 * 120.00318 * 0.40130 * 22 21 20 24 24 C 1.38241 * 119.99813 * 359.85244 * 23 22 21 25 25 C 1.38233 * 119.99723 * 262.68244 * 20 9 7 26 26 H 0.97006 * 120.00030 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46948 * 299.99296 * 12 11 9 28 28 H 1.08994 * 109.47042 * 59.99642 * 12 11 9 29 29 H 1.08998 * 109.47020 * 299.99522 * 13 12 11 30 30 H 1.09004 * 109.47465 * 59.99975 * 13 12 11 31 31 H 1.08998 * 109.47024 * 299.99701 * 14 13 12 32 32 H 1.09004 * 109.46916 * 59.99820 * 14 13 12 33 33 H 1.08998 * 109.47339 * 300.00390 * 15 14 13 34 34 H 1.09004 * 109.47145 * 60.00199 * 15 14 13 35 35 H 1.08998 * 109.47024 * 299.99940 * 16 15 14 36 36 H 1.08994 * 109.46822 * 60.00197 * 16 15 14 37 37 H 0.97005 * 120.00005 * 359.97438 * 18 17 16 38 38 H 0.96993 * 120.00019 * 179.97438 * 18 17 16 39 39 H 1.08002 * 120.00696 * 359.97438 * 21 20 9 40 40 H 1.08007 * 119.99539 * 180.23162 * 22 21 20 41 41 H 1.07997 * 120.00300 * 179.83829 * 23 22 21 42 42 H 1.07997 * 119.99910 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.00286 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5976 1.9881 -1.3953 5 1 1.3996 2.6798 0.5965 6 1 3.4925 1.4715 0.7986 7 6 2.0045 -1.1939 0.0005 8 1 1.4682 -2.1272 0.0895 9 6 3.5065 -1.1969 -0.1232 10 1 3.8608 -0.1770 -0.2720 11 8 3.8909 -2.0023 -1.2393 12 6 3.9854 -1.2826 -2.4702 13 6 4.4020 -2.2390 -3.5894 14 6 4.5025 -1.4685 -4.9075 15 6 4.9197 -2.4247 -6.0266 16 6 5.0209 -1.6542 -7.3446 17 6 5.4312 -2.5962 -8.4470 18 7 5.5847 -2.1359 -9.7044 19 8 5.6242 -3.7684 -8.2025 20 6 4.1131 -1.7609 1.1358 21 6 4.2058 -3.1296 1.3053 22 6 4.7659 -3.6468 2.4585 23 6 5.2256 -2.7954 3.4458 24 6 5.1280 -1.4267 3.2785 25 6 4.5715 -0.9094 2.1236 26 1 -0.4850 0.8401 -0.0004 27 1 3.0171 -0.8429 -2.7092 28 1 4.7293 -0.4920 -2.3726 29 1 5.3704 -2.6783 -3.3502 30 1 3.6583 -3.0299 -3.6872 31 1 3.5339 -1.0295 -5.1465 32 1 5.2460 -0.6774 -4.8101 33 1 5.8884 -2.8635 -5.7874 34 1 4.1766 -3.2162 -6.1242 35 1 4.0524 -1.2152 -7.5840 36 1 5.7642 -0.8631 -7.2467 37 1 5.4307 -1.1983 -9.8998 38 1 5.8492 -2.7421 -10.4138 39 1 3.8433 -3.7950 0.5357 40 1 4.8418 -4.7163 2.5893 41 1 5.6607 -3.1995 4.3478 42 1 5.4867 -0.7615 4.0499 43 1 4.4954 0.1599 1.9929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210102372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:05 Heat of formation + Delta-G solvation = -89.080618 kcal Electronic energy + Delta-G solvation = -22275.451956 eV Core-core repulsion = 18898.433170 eV Total energy + Delta-G solvation = -3377.018786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69995 -38.65692 -36.97198 -35.32367 -33.92228 -32.86655 -31.59333 -30.53794 -30.15140 -27.23572 -26.21694 -23.02672 -22.30021 -21.73072 -20.83788 -20.40715 -20.05209 -17.54366 -17.18871 -16.82826 -16.22451 -16.14577 -15.61629 -15.13538 -14.72982 -14.38200 -14.10645 -13.80957 -13.71442 -13.37330 -12.84756 -12.69519 -12.62908 -12.57463 -12.09241 -11.89076 -11.50791 -11.22741 -11.13007 -11.04108 -10.97929 -10.60006 -10.43107 -10.34858 -10.17064 -10.11976 -9.97430 -9.78478 -9.42034 -8.77197 -8.46668 -8.21838 -7.77622 -6.26020 -4.27625 2.09423 2.13670 2.42342 3.12115 3.19458 3.22393 3.27887 4.21865 4.40127 4.59713 4.62179 4.88564 4.94337 5.14083 5.30253 5.31487 5.46489 5.52804 5.58976 5.67993 5.74800 5.77268 5.95339 6.00686 6.07884 6.13034 6.22133 6.25396 6.33513 6.34362 6.48468 6.56122 6.63918 6.68372 6.74836 6.80590 7.03179 7.13770 7.24397 7.41298 7.48651 7.73987 8.01504 8.19973 8.47654 8.87939 9.35818 10.86463 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.003307 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.645451 B = 8464.098036 C = 9722.142541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.079 3.921 3 Si 0.865 3.135 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.214 3.786 10 H 0.031 0.969 11 O -0.394 6.394 12 C 0.071 3.929 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.104 4.104 16 C -0.143 4.143 17 C 0.514 3.486 18 N -0.862 5.862 19 O -0.542 6.542 20 C -0.034 4.034 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.125 4.125 25 C -0.129 4.129 26 H 0.267 0.733 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.401 0.599 38 H 0.399 0.601 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.335 0.854 -11.343 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.158 3.842 10 H 0.048 0.952 11 O -0.314 6.314 12 C -0.006 4.006 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.142 4.142 16 C -0.183 4.183 17 C 0.300 3.700 18 N -0.425 5.425 19 O -0.419 6.419 20 C -0.034 4.034 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.165 4.165 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.229 0.771 38 H 0.229 0.771 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.270 0.053 -10.964 15.723 hybrid contribution 0.163 1.583 -0.388 1.638 sum 11.433 1.636 -11.352 16.194 Atomic orbital electron populations 1.69896 1.06210 1.27293 1.48613 1.25089 0.94798 0.98808 0.93851 0.87071 0.80521 0.84041 0.79128 1.19769 1.20830 1.18599 1.21300 0.88784 0.95269 1.50392 0.89996 1.19037 0.94381 0.89453 0.81361 0.95171 1.87781 1.89826 1.37732 1.16016 1.22193 0.99172 0.93798 0.85485 1.21477 1.02204 0.98839 0.92772 1.21529 1.01709 0.98114 0.94196 1.21352 1.03118 0.98038 0.91666 1.21737 1.03576 0.98662 0.94329 1.20910 0.75866 0.89207 0.84032 1.43959 1.73659 1.14437 1.10467 1.90760 1.50101 1.18094 1.82906 1.20227 0.92761 0.93657 0.96779 1.20957 0.98557 0.95254 0.97048 1.21064 1.00003 0.98935 0.94515 1.20888 1.02912 0.93646 0.99043 1.20930 1.00813 0.95162 0.97363 1.20997 0.99777 0.99573 0.94379 0.92249 0.93249 0.95403 0.91740 0.91128 0.91620 0.92043 0.91193 0.91003 0.88671 0.88803 0.77101 0.77122 0.85964 0.87029 0.87236 0.87070 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 13.96 55.43 0.77 -25.39 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.87 20.41 26.95 -169.99 -4.58 15.83 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.81 5.42 56.52 0.31 -5.51 16 7 C -0.52 -14.54 9.17 -34.44 -0.32 -14.85 16 8 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.21 5.17 2.26 -29.03 -0.07 5.11 16 10 H 0.03 0.73 4.33 -51.93 -0.22 0.50 16 11 O -0.39 -9.01 9.21 -35.23 -0.32 -9.33 16 12 C 0.07 1.37 5.74 37.16 0.21 1.58 16 13 C -0.12 -1.79 5.58 -26.73 -0.15 -1.94 16 14 C -0.12 -1.43 5.21 -26.73 -0.14 -1.57 16 15 C -0.10 -1.16 4.50 -26.73 -0.12 -1.28 16 16 C -0.14 -1.19 5.70 -27.88 -0.16 -1.35 16 17 C 0.51 5.13 8.10 -10.98 -0.09 5.04 16 18 N -0.86 -5.01 8.87 31.22 0.28 -4.74 16 19 O -0.54 -8.03 16.82 5.55 0.09 -7.93 16 20 C -0.03 -0.76 4.97 -104.63 -0.52 -1.28 16 21 C -0.10 -2.08 9.36 -39.58 -0.37 -2.45 16 22 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 23 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 24 C -0.12 -2.20 10.05 -39.58 -0.40 -2.60 16 25 C -0.13 -2.66 9.67 -39.58 -0.38 -3.05 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 1.08 8.83 -40.82 -0.36 0.72 16 38 H 0.40 2.04 8.93 -40.82 -0.36 1.68 16 39 H 0.12 2.55 7.71 -52.49 -0.40 2.15 16 40 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.11 2.32 6.69 -52.48 -0.35 1.97 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -33.55 359.62 -8.58 -42.13 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.85 Total: 6.04 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -3.39 Total: -22.04 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 1.05 Total: -30.12 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.23 Total: -17.26 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.58 Total: 15.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.55 -8.58 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210102372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.948 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds