Wall clock time and date at job start Tue Mar 31 2020 07:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48505 * 109.46842 * 265.22178 * 3 2 1 5 5 H 1.48506 * 109.47041 * 25.21596 * 3 2 1 6 6 H 1.48493 * 109.47165 * 145.22170 * 3 2 1 7 7 C 1.37866 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00245 * 354.56569 * 7 2 1 9 9 C 1.50709 * 120.00188 * 174.56078 * 7 2 1 10 10 H 1.08994 * 109.46895 * 356.08138 * 9 7 2 11 11 O 1.42902 * 109.46951 * 236.08351 * 9 7 2 12 12 C 1.42900 * 113.99860 * 90.00250 * 11 9 7 13 13 C 1.53001 * 109.46792 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46936 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47187 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46969 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99936 * 180.02562 * 17 16 15 19 19 O 1.21284 * 120.00036 * 359.97438 * 17 16 15 20 20 C 1.50700 * 109.46860 * 116.08350 * 9 7 2 21 21 C 1.38230 * 119.99868 * 82.40972 * 20 9 7 22 22 C 1.38244 * 119.99495 * 179.80644 * 21 20 9 23 23 C 1.38230 * 120.00318 * 0.40130 * 22 21 20 24 24 C 1.38241 * 119.99813 * 359.85244 * 23 22 21 25 25 C 1.38233 * 119.99723 * 262.68244 * 20 9 7 26 26 H 0.97006 * 120.00030 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46948 * 299.99296 * 12 11 9 28 28 H 1.08994 * 109.47042 * 59.99642 * 12 11 9 29 29 H 1.08998 * 109.47020 * 299.99522 * 13 12 11 30 30 H 1.09004 * 109.47465 * 59.99975 * 13 12 11 31 31 H 1.08998 * 109.47024 * 299.99701 * 14 13 12 32 32 H 1.09004 * 109.46916 * 59.99820 * 14 13 12 33 33 H 1.08998 * 109.47339 * 300.00390 * 15 14 13 34 34 H 1.09004 * 109.47145 * 60.00199 * 15 14 13 35 35 H 1.08998 * 109.47024 * 299.99940 * 16 15 14 36 36 H 1.08994 * 109.46822 * 60.00197 * 16 15 14 37 37 H 0.97005 * 120.00005 * 359.97438 * 18 17 16 38 38 H 0.96993 * 120.00019 * 179.97438 * 18 17 16 39 39 H 1.08002 * 120.00696 * 359.97438 * 21 20 9 40 40 H 1.08007 * 119.99539 * 180.23162 * 22 21 20 41 41 H 1.07997 * 120.00300 * 179.83829 * 23 22 21 42 42 H 1.07997 * 119.99910 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.00286 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5976 1.9881 -1.3953 5 1 1.3996 2.6798 0.5965 6 1 3.4925 1.4715 0.7986 7 6 2.0045 -1.1939 0.0005 8 1 1.4682 -2.1272 0.0895 9 6 3.5065 -1.1969 -0.1232 10 1 3.8608 -0.1770 -0.2720 11 8 3.8909 -2.0023 -1.2393 12 6 3.9854 -1.2826 -2.4702 13 6 4.4020 -2.2390 -3.5894 14 6 4.5025 -1.4685 -4.9075 15 6 4.9197 -2.4247 -6.0266 16 6 5.0209 -1.6542 -7.3446 17 6 5.4312 -2.5962 -8.4470 18 7 5.5847 -2.1359 -9.7044 19 8 5.6242 -3.7684 -8.2025 20 6 4.1131 -1.7609 1.1358 21 6 4.2058 -3.1296 1.3053 22 6 4.7659 -3.6468 2.4585 23 6 5.2256 -2.7954 3.4458 24 6 5.1280 -1.4267 3.2785 25 6 4.5715 -0.9094 2.1236 26 1 -0.4850 0.8401 -0.0004 27 1 3.0171 -0.8429 -2.7092 28 1 4.7293 -0.4920 -2.3726 29 1 5.3704 -2.6783 -3.3502 30 1 3.6583 -3.0299 -3.6872 31 1 3.5339 -1.0295 -5.1465 32 1 5.2460 -0.6774 -4.8101 33 1 5.8884 -2.8635 -5.7874 34 1 4.1766 -3.2162 -6.1242 35 1 4.0524 -1.2152 -7.5840 36 1 5.7642 -0.8631 -7.2467 37 1 5.4307 -1.1983 -9.8998 38 1 5.8492 -2.7421 -10.4138 39 1 3.8433 -3.7950 0.5357 40 1 4.8418 -4.7163 2.5893 41 1 5.6607 -3.1995 4.3478 42 1 5.4867 -0.7615 4.0499 43 1 4.4954 0.1599 1.9929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210102372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:05 Heat of formation + Delta-G solvation = -112.481186 kcal Electronic energy + Delta-G solvation = -22276.466681 eV Core-core repulsion = 18898.433170 eV Total energy + Delta-G solvation = -3378.033511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49999 -40.22007 -38.56404 -36.48757 -34.85223 -34.61615 -33.09266 -31.86079 -31.58706 -29.03032 -27.46272 -24.70874 -23.65912 -23.09291 -22.09384 -21.62750 -21.16850 -19.28022 -18.16310 -17.71616 -17.64700 -17.32710 -17.12544 -16.54947 -16.12507 -16.05137 -15.26297 -15.07116 -14.92035 -14.86431 -14.67654 -14.18883 -13.99001 -13.77652 -13.39044 -13.36436 -12.95848 -12.87578 -12.51620 -12.36335 -12.08127 -12.00619 -11.82925 -11.77104 -11.73781 -11.42408 -11.24208 -11.00182 -10.83416 -10.62842 -10.21619 -9.69383 -9.40145 -8.40998 -6.49653 0.60749 0.64939 1.24998 1.28251 1.38001 1.68045 2.22709 2.63344 2.79945 3.10110 3.16496 3.91257 3.99075 3.99457 4.11723 4.24559 4.25605 4.27525 4.33654 4.39589 4.47437 4.58754 4.68027 4.70607 4.80588 4.85810 4.87325 4.88865 5.06760 5.07187 5.22160 5.24628 5.30623 5.37760 5.42530 5.48421 5.69133 5.73712 5.90915 5.92860 6.09592 6.26887 6.50237 6.52954 6.71908 7.20206 7.39419 8.75894 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.003307 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.645451 B = 8464.098036 C = 9722.142541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.239 1.239 7 C -0.531 4.531 8 H 0.027 0.973 9 C 0.221 3.779 10 H 0.035 0.965 11 O -0.408 6.408 12 C 0.063 3.937 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.100 4.100 16 C -0.137 4.137 17 C 0.510 3.490 18 N -0.840 5.840 19 O -0.601 6.601 20 C -0.071 4.071 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.119 4.119 25 C -0.146 4.146 26 H 0.271 0.729 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.419 0.581 38 H 0.404 0.596 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.129 2.742 -10.891 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.175 4.175 3 Si 0.750 3.250 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.163 1.163 7 C -0.569 4.569 8 H 0.045 0.955 9 C 0.165 3.835 10 H 0.053 0.947 11 O -0.329 6.329 12 C -0.014 4.014 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.138 4.138 16 C -0.176 4.176 17 C 0.296 3.704 18 N -0.404 5.404 19 O -0.482 6.482 20 C -0.071 4.071 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.137 4.137 25 C -0.164 4.164 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.121 0.879 40 H 0.160 0.840 41 H 0.172 0.828 42 H 0.167 0.833 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.078 1.970 -10.557 17.707 hybrid contribution -0.704 0.863 -0.515 1.227 sum 13.374 2.833 -11.072 17.592 Atomic orbital electron populations 1.70050 1.08241 1.28587 1.50447 1.25977 0.95590 1.02908 0.93071 0.86057 0.79884 0.78562 0.80466 1.17892 1.20219 1.16257 1.21404 0.91217 0.93405 1.50825 0.95509 1.18855 0.91898 0.90043 0.82713 0.94722 1.87761 1.89555 1.38520 1.17019 1.22467 0.98657 0.95114 0.85157 1.21470 1.01674 0.98129 0.93419 1.21465 1.02640 0.98217 0.92220 1.21238 1.01761 0.97666 0.93180 1.21711 1.05634 0.98363 0.91914 1.21220 0.75244 0.88556 0.85383 1.43781 1.71695 1.15602 1.09275 1.90743 1.53053 1.20482 1.83942 1.20249 0.95309 0.94836 0.96742 1.20977 1.00144 0.94666 0.98399 1.21418 0.98554 1.00925 0.93351 1.21413 1.00922 0.93160 0.99758 1.21374 0.99137 0.96389 0.96814 1.21152 1.00686 0.99422 0.95186 0.91965 0.95436 0.93500 0.91272 0.92811 0.91281 0.89944 0.92281 0.93113 0.86551 0.85928 0.74935 0.76503 0.87861 0.84005 0.82837 0.83312 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.96 21.44 0.30 -57.60 16 2 C 0.02 1.39 5.47 84.65 0.46 1.85 16 3 Si 0.93 42.11 26.95 68.60 1.85 43.96 16 4 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.24 -9.91 5.42 99.48 0.54 -9.37 16 7 C -0.53 -31.44 9.17 25.60 0.23 -31.20 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.22 11.05 2.26 29.10 0.07 11.11 16 10 H 0.04 1.67 4.33 -2.39 -0.01 1.66 16 11 O -0.41 -19.52 9.21 -148.98 -1.37 -20.89 16 12 C 0.06 2.48 5.74 71.98 0.41 2.89 16 13 C -0.11 -3.46 5.58 30.60 0.17 -3.29 16 14 C -0.11 -2.50 5.21 30.59 0.16 -2.34 16 15 C -0.10 -2.20 4.50 30.59 0.14 -2.06 16 16 C -0.14 -1.97 5.70 29.85 0.17 -1.80 16 17 C 0.51 9.55 8.10 87.66 0.71 10.26 16 18 N -0.84 -8.03 8.87 -173.53 -1.54 -9.57 16 19 O -0.60 -18.05 16.82 -3.04 -0.05 -18.10 16 20 C -0.07 -3.24 4.97 -19.87 -0.10 -3.34 16 21 C -0.12 -5.24 9.36 22.27 0.21 -5.03 16 22 C -0.12 -4.17 10.05 22.27 0.22 -3.94 16 23 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 24 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16 25 C -0.15 -5.83 9.67 22.27 0.22 -5.61 16 26 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 34 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 0.99 8.83 -92.70 -0.82 0.18 16 38 H 0.40 3.47 8.93 -92.71 -0.83 2.64 16 39 H 0.10 4.61 7.71 -2.91 -0.02 4.59 16 40 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 41 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 42 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 43 H 0.11 4.43 6.69 -2.91 -0.02 4.41 16 Total: -1.00 -79.49 359.62 1.90 -77.59 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.80 Total: 24.39 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.52 Total: -39.79 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -1.24 Total: -67.16 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.42 Total: -38.99 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.85 Total: 43.96 kcal Total: -79.49 1.90 -77.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210102372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.895 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds