Wall clock time and date at job start Tue Mar 31 2020 07:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00199 * 2 1 4 4 H 1.48504 * 109.46901 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47365 * 119.99752 * 3 2 1 6 6 H 1.48501 * 109.47320 * 240.00271 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00352 * 186.04983 * 7 2 1 9 9 C 1.50703 * 119.99822 * 6.05310 * 7 2 1 10 10 H 1.08998 * 109.47269 * 25.08867 * 9 7 2 11 11 O 1.42903 * 109.46933 * 145.08628 * 9 7 2 12 12 C 1.42904 * 114.00041 * 269.99902 * 11 9 7 13 13 C 1.52997 * 109.47086 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47266 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47295 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47295 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47369 * 180.02562 * 16 15 14 18 18 N 1.34778 * 119.99812 * 179.97438 * 17 16 15 19 19 O 1.21276 * 119.99847 * 0.02562 * 17 16 15 20 20 C 1.50697 * 109.47277 * 265.08383 * 9 7 2 21 21 C 1.38237 * 120.00117 * 276.27390 * 20 9 7 22 22 C 1.38233 * 119.99648 * 179.78320 * 21 20 9 23 23 C 1.38231 * 120.00431 * 0.44802 * 22 21 20 24 24 C 1.38240 * 119.99810 * 359.80813 * 23 22 21 25 25 C 1.38231 * 119.99932 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99890 * 175.51688 * 1 2 3 27 27 H 1.09002 * 109.47108 * 299.99956 * 12 11 9 28 28 H 1.08997 * 109.47268 * 60.00047 * 12 11 9 29 29 H 1.09002 * 109.46893 * 299.99821 * 13 12 11 30 30 H 1.08997 * 109.47246 * 59.99766 * 13 12 11 31 31 H 1.08996 * 109.47090 * 300.00179 * 14 13 12 32 32 H 1.09007 * 109.46989 * 59.99794 * 14 13 12 33 33 H 1.08996 * 109.47497 * 300.00297 * 15 14 13 34 34 H 1.09007 * 109.46971 * 60.00150 * 15 14 13 35 35 H 1.09002 * 109.47009 * 300.00106 * 16 15 14 36 36 H 1.08997 * 109.47188 * 60.00086 * 16 15 14 37 37 H 0.96999 * 119.99955 * 0.02562 * 18 17 16 38 38 H 0.96998 * 119.99703 * 179.97438 * 18 17 16 39 39 H 1.07991 * 120.00042 * 359.97438 * 21 20 9 40 40 H 1.08003 * 119.99696 * 180.27535 * 22 21 20 41 41 H 1.07997 * 120.00625 * 179.83176 * 23 22 21 42 42 H 1.08001 * 120.00066 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00041 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1967 0.0991 9 6 1.2573 -2.4956 -0.1365 10 1 0.3132 -2.3199 -0.6521 11 8 2.0456 -3.4206 -0.8882 12 6 1.8188 -3.3662 -2.2980 13 6 2.7104 -4.3937 -2.9980 14 6 2.4680 -4.3351 -4.5076 15 6 3.3601 -5.3622 -5.2076 16 6 3.1182 -5.3031 -6.7172 17 6 3.9964 -6.3153 -7.4068 18 7 3.9524 -6.4432 -8.7477 19 8 4.7420 -7.0152 -6.7549 20 6 0.9841 -3.0645 1.2319 21 6 1.9523 -3.8122 1.8756 22 6 1.7033 -4.3302 3.1327 23 6 0.4826 -4.1084 3.7424 24 6 -0.4876 -3.3652 3.0965 25 6 -0.2369 -2.8433 1.8412 26 1 -0.4850 -0.8375 -0.0657 27 1 0.7728 -3.5912 -2.5067 28 1 2.0561 -2.3681 -2.6660 29 1 3.7564 -4.1691 -2.7894 30 1 2.4727 -5.3918 -2.6300 31 1 1.4220 -4.5594 -4.7166 32 1 2.7061 -3.3370 -4.8753 33 1 4.4060 -5.1376 -4.9986 34 1 3.1224 -6.3605 -4.8400 35 1 2.0723 -5.5276 -6.9266 36 1 3.3561 -4.3049 -7.0846 37 1 3.3558 -5.8836 -9.2690 38 1 4.5180 -7.0944 -9.1915 39 1 2.9044 -3.9890 1.3976 40 1 2.4614 -4.9106 3.6375 41 1 0.2870 -4.5154 4.7234 42 1 -1.4412 -3.1915 3.5729 43 1 -0.9948 -2.2623 1.3368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210102384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:08 Heat of formation + Delta-G solvation = -95.043019 kcal Electronic energy + Delta-G solvation = -22230.720709 eV Core-core repulsion = 18853.443374 eV Total energy + Delta-G solvation = -3377.277335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.72156 -38.58046 -36.95064 -35.35632 -33.94221 -33.22808 -31.37319 -30.27250 -30.05184 -26.77872 -25.75344 -23.18027 -22.38671 -21.59596 -20.87400 -20.42855 -20.29619 -17.56195 -17.21167 -16.83278 -16.19109 -16.12306 -15.51082 -15.04172 -14.59840 -14.14528 -13.99888 -13.79977 -13.65090 -13.47130 -13.07783 -12.66247 -12.57396 -12.24080 -12.08373 -11.79394 -11.47359 -11.13267 -11.07729 -10.87733 -10.80266 -10.46362 -10.36691 -10.25948 -10.19019 -10.11918 -9.99254 -9.66485 -9.49786 -8.58470 -8.36133 -8.11930 -7.62153 -6.51335 -4.25674 2.20894 2.24078 2.40380 3.26017 3.38169 3.39315 3.58152 4.38713 4.47349 4.59737 4.68994 4.86050 4.98796 5.21802 5.27783 5.28650 5.46331 5.60766 5.66453 5.70173 5.74857 5.80373 5.93369 6.06758 6.09881 6.19473 6.21480 6.31774 6.37857 6.43411 6.46778 6.60012 6.65457 6.73334 6.89186 6.90029 7.01440 7.23846 7.35661 7.57754 7.81904 7.92800 7.99625 8.11273 8.57678 8.67936 9.46764 10.83175 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.003183 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.520336 B = 8794.268162 C =10231.992147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 1.069 2.931 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.601 4.601 8 H 0.060 0.940 9 C 0.228 3.772 10 H 0.033 0.967 11 O -0.396 6.396 12 C 0.076 3.924 13 C -0.116 4.116 14 C -0.117 4.117 15 C -0.104 4.104 16 C -0.143 4.143 17 C 0.514 3.486 18 N -0.861 5.861 19 O -0.543 6.543 20 C -0.034 4.034 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.151 4.151 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.269 0.731 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.399 0.601 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -8.803 -11.884 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.180 4.180 3 Si 0.897 3.103 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.638 4.638 8 H 0.078 0.922 9 C 0.172 3.828 10 H 0.050 0.950 11 O -0.316 6.316 12 C -0.002 4.002 13 C -0.153 4.153 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.183 4.183 17 C 0.300 3.700 18 N -0.425 5.425 19 O -0.419 6.419 20 C -0.035 4.035 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.138 4.138 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.229 0.771 38 H 0.229 0.771 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.236 -7.640 -11.145 13.696 hybrid contribution -0.077 -1.336 -0.591 1.463 sum 2.159 -8.976 -11.736 14.932 Atomic orbital electron populations 1.70870 1.06806 1.30968 1.44993 1.25929 0.96411 1.02777 0.92836 0.83533 0.74987 0.74971 0.76843 1.20613 1.21205 1.21181 1.22277 0.95637 0.90924 1.55008 0.92190 1.18831 0.91555 0.87108 0.85314 0.94952 1.87691 1.66465 1.61324 1.16125 1.22153 0.96685 0.98104 0.83221 1.21484 1.00791 0.99622 0.93447 1.21514 0.99573 0.99161 0.95171 1.21351 1.00987 1.00300 0.91545 1.21734 1.00094 0.98799 0.97659 1.20906 0.82867 0.83948 0.82295 1.43959 1.46884 1.43588 1.08077 1.90758 1.40374 1.45796 1.64962 1.20427 0.92180 0.92457 0.98399 1.20891 0.99452 0.97764 0.94288 1.21012 0.96872 1.01164 0.95785 1.20851 0.94590 1.01807 0.99627 1.20943 0.98828 0.99084 0.95450 1.20955 0.97076 1.00042 0.95711 0.91885 0.95261 0.93476 0.91379 0.91784 0.91953 0.91679 0.91087 0.91188 0.88760 0.88674 0.77085 0.77112 0.86433 0.87290 0.87412 0.87186 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 13.63 55.43 0.76 -25.02 16 2 C 0.03 0.72 5.45 -17.82 -0.10 0.62 16 3 Si 1.07 24.63 29.91 -169.99 -5.08 19.55 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.60 -16.64 8.62 -34.44 -0.30 -16.94 16 8 H 0.06 1.71 7.82 -52.48 -0.41 1.30 16 9 C 0.23 5.79 2.19 -29.04 -0.06 5.73 16 10 H 0.03 0.86 5.99 -51.93 -0.31 0.55 16 11 O -0.40 -9.31 9.16 -35.23 -0.32 -9.64 16 12 C 0.08 1.48 5.74 37.16 0.21 1.69 16 13 C -0.12 -1.80 5.58 -26.73 -0.15 -1.95 16 14 C -0.12 -1.40 5.21 -26.73 -0.14 -1.53 16 15 C -0.10 -1.15 4.50 -26.73 -0.12 -1.27 16 16 C -0.14 -1.16 5.70 -27.88 -0.16 -1.32 16 17 C 0.51 5.05 8.10 -10.98 -0.09 4.96 16 18 N -0.86 -4.89 8.87 31.22 0.28 -4.61 16 19 O -0.54 -7.97 16.82 5.56 0.09 -7.87 16 20 C -0.03 -0.81 4.98 -104.62 -0.52 -1.33 16 21 C -0.11 -2.33 9.35 -39.58 -0.37 -2.70 16 22 C -0.13 -2.47 10.05 -39.59 -0.40 -2.87 16 23 C -0.15 -2.73 10.05 -39.58 -0.40 -3.12 16 24 C -0.12 -2.42 10.05 -39.58 -0.40 -2.81 16 25 C -0.12 -2.68 9.54 -39.58 -0.38 -3.06 16 26 H 0.27 7.57 5.21 -40.82 -0.21 7.35 16 27 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.40 1.02 8.83 -40.82 -0.36 0.66 16 38 H 0.40 1.99 8.93 -40.82 -0.36 1.63 16 39 H 0.12 2.58 7.67 -52.49 -0.40 2.17 16 40 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.12 2.65 6.86 -52.49 -0.36 2.29 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -33.49 361.57 -8.90 -42.39 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.71 Total: 5.67 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -3.36 Total: -25.91 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 1.03 Total: -29.63 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.23 Total: -17.51 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.49 -8.90 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210102384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.656 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds