Wall clock time and date at job start Tue Mar 31 2020 07:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00199 * 2 1 4 4 H 1.48504 * 109.46901 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47365 * 119.99752 * 3 2 1 6 6 H 1.48501 * 109.47320 * 240.00271 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00352 * 186.04983 * 7 2 1 9 9 C 1.50703 * 119.99822 * 6.05310 * 7 2 1 10 10 H 1.08998 * 109.47269 * 25.08867 * 9 7 2 11 11 O 1.42903 * 109.46933 * 145.08628 * 9 7 2 12 12 C 1.42904 * 114.00041 * 269.99902 * 11 9 7 13 13 C 1.52997 * 109.47086 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47266 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47295 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47295 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47369 * 180.02562 * 16 15 14 18 18 N 1.34778 * 119.99812 * 179.97438 * 17 16 15 19 19 O 1.21276 * 119.99847 * 0.02562 * 17 16 15 20 20 C 1.50697 * 109.47277 * 265.08383 * 9 7 2 21 21 C 1.38237 * 120.00117 * 276.27390 * 20 9 7 22 22 C 1.38233 * 119.99648 * 179.78320 * 21 20 9 23 23 C 1.38231 * 120.00431 * 0.44802 * 22 21 20 24 24 C 1.38240 * 119.99810 * 359.80813 * 23 22 21 25 25 C 1.38231 * 119.99932 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99890 * 175.51688 * 1 2 3 27 27 H 1.09002 * 109.47108 * 299.99956 * 12 11 9 28 28 H 1.08997 * 109.47268 * 60.00047 * 12 11 9 29 29 H 1.09002 * 109.46893 * 299.99821 * 13 12 11 30 30 H 1.08997 * 109.47246 * 59.99766 * 13 12 11 31 31 H 1.08996 * 109.47090 * 300.00179 * 14 13 12 32 32 H 1.09007 * 109.46989 * 59.99794 * 14 13 12 33 33 H 1.08996 * 109.47497 * 300.00297 * 15 14 13 34 34 H 1.09007 * 109.46971 * 60.00150 * 15 14 13 35 35 H 1.09002 * 109.47009 * 300.00106 * 16 15 14 36 36 H 1.08997 * 109.47188 * 60.00086 * 16 15 14 37 37 H 0.96999 * 119.99955 * 0.02562 * 18 17 16 38 38 H 0.96998 * 119.99703 * 179.97438 * 18 17 16 39 39 H 1.07991 * 120.00042 * 359.97438 * 21 20 9 40 40 H 1.08003 * 119.99696 * 180.27535 * 22 21 20 41 41 H 1.07997 * 120.00625 * 179.83176 * 23 22 21 42 42 H 1.08001 * 120.00066 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00041 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1967 0.0991 9 6 1.2573 -2.4956 -0.1365 10 1 0.3132 -2.3199 -0.6521 11 8 2.0456 -3.4206 -0.8882 12 6 1.8188 -3.3662 -2.2980 13 6 2.7104 -4.3937 -2.9980 14 6 2.4680 -4.3351 -4.5076 15 6 3.3601 -5.3622 -5.2076 16 6 3.1182 -5.3031 -6.7172 17 6 3.9964 -6.3153 -7.4068 18 7 3.9524 -6.4432 -8.7477 19 8 4.7420 -7.0152 -6.7549 20 6 0.9841 -3.0645 1.2319 21 6 1.9523 -3.8122 1.8756 22 6 1.7033 -4.3302 3.1327 23 6 0.4826 -4.1084 3.7424 24 6 -0.4876 -3.3652 3.0965 25 6 -0.2369 -2.8433 1.8412 26 1 -0.4850 -0.8375 -0.0657 27 1 0.7728 -3.5912 -2.5067 28 1 2.0561 -2.3681 -2.6660 29 1 3.7564 -4.1691 -2.7894 30 1 2.4727 -5.3918 -2.6300 31 1 1.4220 -4.5594 -4.7166 32 1 2.7061 -3.3370 -4.8753 33 1 4.4060 -5.1376 -4.9986 34 1 3.1224 -6.3605 -4.8400 35 1 2.0723 -5.5276 -6.9266 36 1 3.3561 -4.3049 -7.0846 37 1 3.3558 -5.8836 -9.2690 38 1 4.5180 -7.0944 -9.1915 39 1 2.9044 -3.9890 1.3976 40 1 2.4614 -4.9106 3.6375 41 1 0.2870 -4.5154 4.7234 42 1 -1.4412 -3.1915 3.5729 43 1 -0.9948 -2.2623 1.3368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210102384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:07 Heat of formation + Delta-G solvation = -116.998895 kcal Electronic energy + Delta-G solvation = -22231.672787 eV Core-core repulsion = 18853.443374 eV Total energy + Delta-G solvation = -3378.229413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51366 -40.26592 -38.60232 -36.56232 -35.14997 -34.62894 -32.77115 -31.76608 -31.61962 -28.34141 -27.30043 -25.04850 -23.70149 -23.09110 -22.24053 -21.84853 -21.18046 -19.22822 -18.17051 -17.76559 -17.60658 -17.30932 -17.05986 -16.36910 -16.21374 -15.69526 -15.44374 -15.25701 -15.03090 -14.85911 -14.57084 -14.13433 -13.88031 -13.81467 -13.41938 -13.26760 -12.90608 -12.69871 -12.40234 -12.17910 -12.11017 -11.98239 -11.92693 -11.76512 -11.53703 -11.48673 -11.34112 -11.01047 -10.65669 -10.63693 -10.19518 -9.72830 -9.40976 -8.68026 -6.45274 0.58970 0.62701 1.50016 1.56702 1.66984 1.77314 2.49098 2.63125 2.89499 3.10756 3.14975 3.89362 3.95077 3.98287 4.10472 4.20743 4.21719 4.24455 4.31086 4.39756 4.47791 4.58319 4.64635 4.68007 4.77970 4.82601 4.84866 4.88458 5.02683 5.04829 5.18752 5.23291 5.27785 5.37306 5.45080 5.65703 5.70481 5.81245 5.92008 5.92713 5.96659 6.24180 6.47683 6.49318 6.65899 7.35541 7.38442 8.65228 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.003183 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.520336 B = 8794.268162 C =10231.992147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.016 4.016 3 Si 1.112 2.888 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.616 4.616 8 H 0.043 0.957 9 C 0.233 3.767 10 H 0.008 0.992 11 O -0.409 6.409 12 C 0.071 3.929 13 C -0.107 4.107 14 C -0.106 4.106 15 C -0.100 4.100 16 C -0.137 4.137 17 C 0.510 3.490 18 N -0.840 5.840 19 O -0.601 6.601 20 C -0.068 4.068 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.123 4.123 25 C -0.142 4.142 26 H 0.261 0.739 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.419 0.581 38 H 0.404 0.596 39 H 0.107 0.893 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -9.220 -11.633 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.217 4.217 3 Si 0.933 3.067 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.654 4.654 8 H 0.061 0.939 9 C 0.177 3.823 10 H 0.026 0.974 11 O -0.329 6.329 12 C -0.006 4.006 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.138 4.138 16 C -0.176 4.176 17 C 0.296 3.704 18 N -0.403 5.403 19 O -0.482 6.482 20 C -0.069 4.069 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.155 4.155 24 C -0.141 4.141 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.125 0.875 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.160 0.840 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.027 -8.066 -10.954 13.753 hybrid contribution -0.053 -1.312 -0.663 1.471 sum 1.974 -9.378 -11.617 15.060 Atomic orbital electron populations 1.70950 1.07438 1.30583 1.46686 1.27224 0.96565 1.05911 0.91959 0.83007 0.74319 0.71515 0.77880 1.20246 1.20178 1.19362 1.22448 0.94928 0.92608 1.55394 0.93890 1.18646 0.90162 0.87053 0.86468 0.97394 1.87667 1.66381 1.60804 1.18044 1.22391 0.97989 0.98597 0.81645 1.21463 0.99183 0.98062 0.95756 1.21445 1.00713 0.99989 0.92227 1.21231 0.99609 0.99022 0.93917 1.21707 1.01250 0.99592 0.95071 1.21203 0.82316 0.83569 0.83283 1.43781 1.46426 1.43220 1.06910 1.90740 1.42915 1.48144 1.66413 1.20418 0.93832 0.94738 0.97902 1.20944 0.98726 0.98682 0.95974 1.21420 0.98257 1.00109 0.94320 1.21377 0.93275 0.99857 1.00973 1.21330 1.00634 0.98053 0.94039 1.20986 0.96416 1.01183 0.97435 0.92772 0.94839 0.95148 0.92278 0.91753 0.90459 0.90924 0.92804 0.92506 0.86143 0.86351 0.74930 0.76485 0.87510 0.83602 0.82753 0.84022 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 13.63 21.45 0.29 -54.11 16 2 C -0.02 -0.93 5.45 84.65 0.46 -0.47 16 3 Si 1.11 50.13 29.91 68.60 2.05 52.18 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.62 -35.61 8.62 25.60 0.22 -35.39 16 8 H 0.04 2.56 7.82 -2.91 -0.02 2.53 16 9 C 0.23 12.50 2.19 29.10 0.06 12.56 16 10 H 0.01 0.47 5.99 -2.39 -0.01 0.46 16 11 O -0.41 -20.27 9.16 -148.98 -1.37 -21.63 16 12 C 0.07 2.90 5.74 71.98 0.41 3.31 16 13 C -0.11 -3.42 5.58 30.59 0.17 -3.25 16 14 C -0.11 -2.47 5.21 30.59 0.16 -2.31 16 15 C -0.10 -2.16 4.50 30.59 0.14 -2.03 16 16 C -0.14 -1.94 5.70 29.85 0.17 -1.77 16 17 C 0.51 9.43 8.10 87.66 0.71 10.14 16 18 N -0.84 -7.84 8.87 -173.53 -1.54 -9.38 16 19 O -0.60 -17.85 16.82 -3.02 -0.05 -17.90 16 20 C -0.07 -3.38 4.98 -19.87 -0.10 -3.48 16 21 C -0.12 -5.54 9.35 22.27 0.21 -5.33 16 22 C -0.12 -4.35 10.05 22.27 0.22 -4.13 16 23 C -0.14 -4.44 10.05 22.27 0.22 -4.21 16 24 C -0.12 -4.49 10.05 22.27 0.22 -4.27 16 25 C -0.14 -6.48 9.54 22.27 0.21 -6.27 16 26 H 0.26 15.46 5.21 -92.71 -0.48 14.98 16 27 H 0.03 1.32 8.09 -2.39 -0.02 1.31 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.42 0.92 8.83 -92.71 -0.82 0.10 16 38 H 0.40 3.37 8.93 -92.71 -0.83 2.54 16 39 H 0.11 4.83 7.67 -2.92 -0.02 4.81 16 40 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 41 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.10 4.73 6.86 -2.91 -0.02 4.71 16 Total: -1.00 -77.01 361.57 2.54 -74.47 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.35 Total: 23.27 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 3.50 Total: -46.90 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -1.25 Total: -63.48 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.42 Total: -39.54 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Total: -77.01 2.54 -74.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210102384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.527 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds