Wall clock time and date at job start Tue Mar 31 2020 07:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00205 * 2 1 4 4 H 1.48494 * 109.47044 * 264.67987 * 3 2 1 5 5 H 1.48509 * 109.46880 * 24.67703 * 3 2 1 6 6 H 1.48495 * 109.47231 * 144.67357 * 3 2 1 7 7 C 1.37881 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99534 * 359.18957 * 7 2 1 9 9 C 1.50694 * 120.00229 * 179.18058 * 7 2 1 10 10 H 1.09003 * 109.47224 * 2.65890 * 9 7 2 11 11 O 1.42908 * 109.47167 * 242.66104 * 9 7 2 12 12 C 1.42894 * 114.00077 * 86.58987 * 11 9 7 13 13 C 1.52996 * 109.46907 * 175.12276 * 12 11 9 14 14 N 1.46895 * 109.47450 * 294.75211 * 13 12 11 15 15 C 1.47022 * 111.00042 * 287.74361 * 14 13 12 16 16 C 1.53101 * 109.25660 * 177.60478 * 15 14 13 17 17 O 1.43016 * 109.25715 * 56.84994 * 16 15 14 18 18 C 1.43016 * 113.73738 * 301.32633 * 17 16 15 19 19 C 1.47017 * 111.00220 * 164.10739 * 14 13 12 20 20 C 1.50698 * 109.47200 * 122.66011 * 9 7 2 21 21 C 1.38238 * 120.00083 * 81.65619 * 20 9 7 22 22 C 1.38234 * 119.99942 * 179.79120 * 21 20 9 23 23 C 1.38233 * 120.00228 * 0.44073 * 22 21 20 24 24 C 1.38239 * 119.99677 * 359.81202 * 23 22 21 25 25 C 1.38234 * 120.00087 * 261.93715 * 20 9 7 26 26 H 0.97000 * 120.00133 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47120 * 295.12533 * 12 11 9 28 28 H 1.09004 * 109.47069 * 55.12756 * 12 11 9 29 29 H 1.09001 * 109.47050 * 54.75569 * 13 12 11 30 30 H 1.09000 * 109.46896 * 174.75444 * 13 12 11 31 31 H 1.08998 * 109.50628 * 297.53955 * 15 14 13 32 32 H 1.09002 * 109.50560 * 57.66947 * 15 14 13 33 33 H 1.09001 * 109.50757 * 296.91072 * 16 15 14 34 34 H 1.09005 * 109.53839 * 176.80400 * 16 15 14 35 35 H 1.08994 * 109.50460 * 298.73665 * 18 17 16 36 36 H 1.09002 * 109.53769 * 178.62747 * 18 17 16 37 37 H 1.08990 * 109.50473 * 302.32564 * 19 14 13 38 38 H 1.08998 * 109.50212 * 62.41482 * 19 14 13 39 39 H 1.08006 * 120.00051 * 0.02562 * 21 20 9 40 40 H 1.08005 * 119.99882 * 180.27709 * 22 21 20 41 41 H 1.07995 * 120.00334 * 179.83316 * 23 22 21 42 42 H 1.07998 * 119.99503 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00164 * 359.97109 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6091 1.9815 -1.3940 5 1 1.3948 2.6826 0.5846 6 1 3.4859 1.4753 0.8095 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0142 9 6 3.5114 -1.1941 -0.0181 10 1 3.8753 -0.1672 0.0172 11 8 3.9729 -1.8220 -1.2161 12 6 4.0797 -0.9364 -2.3324 13 6 4.6939 -1.6827 -3.5184 14 7 6.0761 -2.0616 -3.1959 15 6 6.9586 -0.8857 -3.1967 16 6 8.3730 -1.3157 -2.7984 17 8 8.8265 -2.3336 -3.6947 18 6 7.9906 -3.4938 -3.7187 19 6 6.5723 -3.0860 -4.1264 20 6 4.0286 -1.9517 1.1775 21 6 4.0947 -3.3322 1.1453 22 6 4.5732 -4.0269 2.2405 23 6 4.9769 -3.3418 3.3712 24 6 4.9058 -1.9617 3.4053 25 6 4.4313 -1.2667 2.3086 26 1 -0.4850 0.8400 -0.0004 27 1 3.0885 -0.5742 -2.6050 28 1 4.7149 -0.0915 -2.0665 29 1 4.1101 -2.5797 -3.7250 30 1 4.6898 -1.0363 -4.3960 31 1 6.9789 -0.4466 -4.1941 32 1 6.5867 -0.1511 -2.4824 33 1 8.3618 -1.7054 -1.7805 34 1 9.0435 -0.4579 -2.8524 35 1 7.9684 -3.9469 -2.7277 36 1 8.3839 -4.2117 -4.4385 37 1 5.9187 -3.9574 -4.0907 38 1 6.5858 -2.6822 -5.1387 39 1 3.7762 -3.8677 0.2631 40 1 4.6291 -5.1052 2.2137 41 1 5.3482 -3.8847 4.2278 42 1 5.2209 -1.4265 4.2888 43 1 4.3758 -0.1884 2.3353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210207151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:20 Heat of formation + Delta-G solvation = -55.797806 kcal Electronic energy + Delta-G solvation = -23883.225584 eV Core-core repulsion = 20507.650049 eV Total energy + Delta-G solvation = -3375.575535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51133 -38.61218 -36.91398 -35.42499 -32.76589 -31.32245 -31.12001 -30.18424 -29.43726 -27.05706 -25.88307 -24.01506 -22.89547 -21.96839 -21.33514 -20.27484 -20.05543 -17.23564 -16.59393 -16.26099 -16.18225 -15.71972 -15.10674 -15.03948 -14.81582 -14.56167 -14.37192 -14.05715 -13.57333 -13.29126 -13.04942 -12.77854 -12.65295 -12.36916 -12.17072 -11.80527 -11.71673 -11.47466 -11.39244 -11.19823 -11.05931 -10.67007 -10.48221 -10.36797 -10.27671 -9.79565 -9.65615 -9.36741 -8.80624 -8.41354 -8.20524 -8.19024 -7.75595 -6.26790 -4.29128 2.10933 2.15591 3.10031 3.17373 3.20788 3.77002 3.93192 4.20127 4.45541 4.69061 4.90398 5.00558 5.07212 5.14698 5.15513 5.26017 5.51949 5.53611 5.56133 5.58348 5.60624 5.68186 5.71870 5.79782 5.79988 5.87102 5.97608 6.07801 6.20988 6.30482 6.33817 6.37918 6.56789 6.74092 6.81757 7.03987 7.11858 7.14798 7.15720 7.26093 7.41378 7.50844 7.75324 8.24129 8.49076 8.86819 9.34894 10.85844 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.005974 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.920278 B = 4686.085896 C = 6016.880789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.865 3.135 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.208 3.792 10 H 0.031 0.969 11 O -0.378 6.378 12 C 0.078 3.922 13 C 0.060 3.940 14 N -0.523 5.523 15 C 0.016 3.984 16 C 0.065 3.935 17 O -0.390 6.390 18 C 0.064 3.936 19 C 0.019 3.981 20 C -0.028 4.028 21 C -0.096 4.096 22 C -0.128 4.128 23 C -0.146 4.146 24 C -0.125 4.125 25 C -0.127 4.127 26 H 0.267 0.733 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.036 0.964 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.803 -3.131 -4.184 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.099 0.901 9 C 0.152 3.848 10 H 0.049 0.951 11 O -0.297 6.297 12 C 0.000 4.000 13 C -0.068 4.068 14 N -0.248 5.248 15 C -0.112 4.112 16 C -0.012 4.012 17 O -0.309 6.309 18 C -0.013 4.013 19 C -0.109 4.109 20 C -0.028 4.028 21 C -0.114 4.114 22 C -0.146 4.146 23 C -0.165 4.165 24 C -0.143 4.143 25 C -0.145 4.145 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.836 -3.390 -3.831 14.752 hybrid contribution -0.239 1.634 -0.543 1.738 sum 13.598 -1.757 -4.374 14.391 Atomic orbital electron populations 1.69880 1.06175 1.27254 1.48848 1.25108 0.94791 0.98721 0.93917 0.87069 0.80421 0.84194 0.79150 1.19713 1.20834 1.18799 1.21346 0.88685 0.95057 1.50601 0.90079 1.19132 0.93965 0.90944 0.80759 0.95092 1.87872 1.87317 1.36076 1.18476 1.22147 0.98176 0.91970 0.87679 1.22208 0.88253 1.00530 0.95782 1.62135 1.01950 1.10316 1.50438 1.22825 0.93994 0.93698 1.00728 1.22649 0.93866 0.91076 0.93617 1.87933 1.50699 1.27755 1.64519 1.22650 0.89120 0.87661 1.01838 1.22768 0.97235 0.96746 0.94162 1.20090 0.92889 0.94151 0.95700 1.20936 0.98498 0.94035 0.97923 1.21049 1.00464 0.99053 0.93998 1.20877 1.03158 0.94330 0.98089 1.20910 1.01162 0.94335 0.97898 1.20902 1.00331 0.99524 0.93725 0.92258 0.92821 0.95384 0.89758 0.94068 0.94442 0.89481 0.91999 0.88782 0.92070 0.88814 0.89537 0.94541 0.86015 0.87131 0.87306 0.87125 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.96 55.43 0.77 -25.29 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.86 20.38 27.17 -169.99 -4.62 15.77 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -5.91 6.47 56.52 0.37 -5.54 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 9 C 0.21 4.95 2.28 -29.04 -0.07 4.88 16 10 H 0.03 0.74 4.04 -51.93 -0.21 0.54 16 11 O -0.38 -8.42 9.20 -35.23 -0.32 -8.74 16 12 C 0.08 1.50 5.92 37.16 0.22 1.72 16 13 C 0.06 0.93 5.36 -3.83 -0.02 0.91 16 14 N -0.52 -7.75 4.63 -234.31 -1.09 -8.84 16 15 C 0.02 0.21 5.47 -3.70 -0.02 0.19 16 16 C 0.06 0.80 7.01 37.21 0.26 1.06 16 17 O -0.39 -5.16 10.83 -35.23 -0.38 -5.54 16 18 C 0.06 0.74 7.01 37.21 0.26 1.00 16 19 C 0.02 0.24 5.62 -3.71 -0.02 0.22 16 20 C -0.03 -0.62 4.96 -104.62 -0.52 -1.14 16 21 C -0.10 -1.97 9.36 -39.58 -0.37 -2.34 16 22 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 23 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 24 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.13 -2.57 9.67 -39.58 -0.38 -2.96 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.05 1.12 8.13 -51.93 -0.42 0.69 16 28 H 0.03 0.52 6.39 -51.93 -0.33 0.19 16 29 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16 30 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.21 6.55 -51.93 -0.34 0.87 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.12 2.53 7.73 -52.48 -0.41 2.12 16 40 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 2.21 8.05 -52.49 -0.42 1.79 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -30.45 348.15 -9.43 -39.88 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.78 Total: 4.54 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -2.26 Total: -17.03 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.31 Total: -34.13 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.71 Total: -14.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.62 Total: 15.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.45 -9.43 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210207151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.917 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds