Wall clock time and date at job start Tue Mar 31 2020 07:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00205 * 2 1 4 4 H 1.48494 * 109.47044 * 264.67987 * 3 2 1 5 5 H 1.48509 * 109.46880 * 24.67703 * 3 2 1 6 6 H 1.48495 * 109.47231 * 144.67357 * 3 2 1 7 7 C 1.37881 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99534 * 359.18957 * 7 2 1 9 9 C 1.50694 * 120.00229 * 179.18058 * 7 2 1 10 10 H 1.09003 * 109.47224 * 2.65890 * 9 7 2 11 11 O 1.42908 * 109.47167 * 242.66104 * 9 7 2 12 12 C 1.42894 * 114.00077 * 86.58987 * 11 9 7 13 13 C 1.52996 * 109.46907 * 175.12276 * 12 11 9 14 14 N 1.46895 * 109.47450 * 294.75211 * 13 12 11 15 15 C 1.47022 * 111.00042 * 287.74361 * 14 13 12 16 16 C 1.53101 * 109.25660 * 177.60478 * 15 14 13 17 17 O 1.43016 * 109.25715 * 56.84994 * 16 15 14 18 18 C 1.43016 * 113.73738 * 301.32633 * 17 16 15 19 19 C 1.47017 * 111.00220 * 164.10739 * 14 13 12 20 20 C 1.50698 * 109.47200 * 122.66011 * 9 7 2 21 21 C 1.38238 * 120.00083 * 81.65619 * 20 9 7 22 22 C 1.38234 * 119.99942 * 179.79120 * 21 20 9 23 23 C 1.38233 * 120.00228 * 0.44073 * 22 21 20 24 24 C 1.38239 * 119.99677 * 359.81202 * 23 22 21 25 25 C 1.38234 * 120.00087 * 261.93715 * 20 9 7 26 26 H 0.97000 * 120.00133 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47120 * 295.12533 * 12 11 9 28 28 H 1.09004 * 109.47069 * 55.12756 * 12 11 9 29 29 H 1.09001 * 109.47050 * 54.75569 * 13 12 11 30 30 H 1.09000 * 109.46896 * 174.75444 * 13 12 11 31 31 H 1.08998 * 109.50628 * 297.53955 * 15 14 13 32 32 H 1.09002 * 109.50560 * 57.66947 * 15 14 13 33 33 H 1.09001 * 109.50757 * 296.91072 * 16 15 14 34 34 H 1.09005 * 109.53839 * 176.80400 * 16 15 14 35 35 H 1.08994 * 109.50460 * 298.73665 * 18 17 16 36 36 H 1.09002 * 109.53769 * 178.62747 * 18 17 16 37 37 H 1.08990 * 109.50473 * 302.32564 * 19 14 13 38 38 H 1.08998 * 109.50212 * 62.41482 * 19 14 13 39 39 H 1.08006 * 120.00051 * 0.02562 * 21 20 9 40 40 H 1.08005 * 119.99882 * 180.27709 * 22 21 20 41 41 H 1.07995 * 120.00334 * 179.83316 * 23 22 21 42 42 H 1.07998 * 119.99503 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00164 * 359.97109 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6091 1.9815 -1.3940 5 1 1.3948 2.6826 0.5846 6 1 3.4859 1.4753 0.8095 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0142 9 6 3.5114 -1.1941 -0.0181 10 1 3.8753 -0.1672 0.0172 11 8 3.9729 -1.8220 -1.2161 12 6 4.0797 -0.9364 -2.3324 13 6 4.6939 -1.6827 -3.5184 14 7 6.0761 -2.0616 -3.1959 15 6 6.9586 -0.8857 -3.1967 16 6 8.3730 -1.3157 -2.7984 17 8 8.8265 -2.3336 -3.6947 18 6 7.9906 -3.4938 -3.7187 19 6 6.5723 -3.0860 -4.1264 20 6 4.0286 -1.9517 1.1775 21 6 4.0947 -3.3322 1.1453 22 6 4.5732 -4.0269 2.2405 23 6 4.9769 -3.3418 3.3712 24 6 4.9058 -1.9617 3.4053 25 6 4.4313 -1.2667 2.3086 26 1 -0.4850 0.8400 -0.0004 27 1 3.0885 -0.5742 -2.6050 28 1 4.7149 -0.0915 -2.0665 29 1 4.1101 -2.5797 -3.7250 30 1 4.6898 -1.0363 -4.3960 31 1 6.9789 -0.4466 -4.1941 32 1 6.5867 -0.1511 -2.4824 33 1 8.3618 -1.7054 -1.7805 34 1 9.0435 -0.4579 -2.8524 35 1 7.9684 -3.9469 -2.7277 36 1 8.3839 -4.2117 -4.4385 37 1 5.9187 -3.9574 -4.0907 38 1 6.5858 -2.6822 -5.1387 39 1 3.7762 -3.8677 0.2631 40 1 4.6291 -5.1052 2.2137 41 1 5.3482 -3.8847 4.2278 42 1 5.2209 -1.4265 4.2888 43 1 4.3758 -0.1884 2.3353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210207151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:19 Heat of formation + Delta-G solvation = -76.061219 kcal Electronic energy + Delta-G solvation = -23884.104271 eV Core-core repulsion = 20507.650049 eV Total energy + Delta-G solvation = -3376.454223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58240 -40.12002 -38.44170 -36.67514 -34.78648 -32.89248 -32.14757 -31.63723 -30.75001 -28.91969 -27.12483 -25.01134 -24.65497 -23.41604 -22.66932 -21.73527 -21.30424 -19.30151 -17.77609 -17.71117 -17.51192 -17.04076 -16.49510 -16.23848 -16.09256 -15.98319 -15.59600 -15.42772 -15.13400 -14.72908 -14.68525 -14.50425 -14.09216 -13.73909 -13.43156 -13.25919 -13.05665 -12.96962 -12.89672 -12.56227 -12.32451 -12.12849 -11.93143 -11.79968 -11.74814 -11.50991 -11.17958 -10.87269 -10.65616 -10.14462 -9.66551 -9.37905 -9.28969 -8.41307 -6.49601 0.63297 0.68173 1.22099 1.24493 1.33727 2.20041 2.72382 2.79394 2.96417 3.12892 3.21023 3.89937 3.97696 4.00413 4.13763 4.19638 4.21317 4.25657 4.31041 4.35278 4.40196 4.42001 4.48844 4.56506 4.66535 4.70675 4.74189 4.81591 4.87037 4.89330 4.92440 4.97923 5.02904 5.25013 5.33295 5.39550 5.71207 5.76268 5.91990 5.98481 6.02243 6.12968 6.17228 6.29473 6.54695 6.75967 7.20710 8.75578 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.005974 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.920278 B = 4686.085896 C = 6016.880789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.026 3.974 3 Si 0.924 3.076 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.526 4.526 8 H 0.029 0.971 9 C 0.217 3.783 10 H 0.031 0.969 11 O -0.386 6.386 12 C 0.072 3.928 13 C 0.070 3.930 14 N -0.544 5.544 15 C 0.016 3.984 16 C 0.067 3.933 17 O -0.400 6.400 18 C 0.064 3.936 19 C 0.020 3.980 20 C -0.065 4.065 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.120 4.120 25 C -0.145 4.145 26 H 0.270 0.730 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.053 0.947 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.740 -3.004 -3.385 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.173 4.173 3 Si 0.747 3.253 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.168 1.168 7 C -0.563 4.563 8 H 0.048 0.952 9 C 0.161 3.839 10 H 0.049 0.951 11 O -0.305 6.305 12 C -0.005 4.005 13 C -0.058 4.058 14 N -0.269 5.269 15 C -0.112 4.112 16 C -0.010 4.010 17 O -0.319 6.319 18 C -0.012 4.012 19 C -0.108 4.108 20 C -0.065 4.065 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.138 4.138 25 C -0.163 4.163 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.796 -3.282 -3.042 17.382 hybrid contribution -1.139 1.438 -0.761 1.986 sum 15.657 -1.844 -3.804 16.217 Atomic orbital electron populations 1.70029 1.08091 1.28426 1.50838 1.25922 0.95519 1.02575 0.93316 0.86103 0.79708 0.79174 0.80324 1.18026 1.20273 1.16844 1.21452 0.91022 0.93190 1.50677 0.95239 1.18915 0.91392 0.91488 0.82104 0.95126 1.87850 1.86917 1.36900 1.18871 1.22340 0.97537 0.92629 0.88042 1.22046 0.88882 1.00337 0.94545 1.62070 1.01637 1.11453 1.51777 1.22851 0.94293 0.93122 1.00974 1.22700 0.93671 0.91701 0.92892 1.87924 1.51148 1.28221 1.64603 1.22772 0.88580 0.87636 1.02239 1.22821 0.97748 0.96182 0.94007 1.20124 0.95513 0.95028 0.95858 1.20940 1.00006 0.93721 0.98865 1.21400 0.99003 1.00672 0.93200 1.21391 1.01020 0.94217 0.98662 1.21336 0.99480 0.95063 0.97898 1.21068 1.01282 0.99785 0.94214 0.92048 0.95069 0.94557 0.90154 0.91890 0.93549 0.90368 0.93061 0.86470 0.92876 0.86134 0.89136 0.93699 0.87810 0.84092 0.82990 0.83514 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.96 21.45 0.30 -57.31 16 2 C 0.03 1.50 5.47 84.66 0.46 1.96 16 3 Si 0.92 42.50 27.17 68.60 1.86 44.36 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.24 -10.43 6.47 99.48 0.64 -9.79 16 7 C -0.53 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 9 C 0.22 10.69 2.28 29.10 0.07 10.75 16 10 H 0.03 1.49 4.04 -2.39 -0.01 1.48 16 11 O -0.39 -17.84 9.20 -148.98 -1.37 -19.21 16 12 C 0.07 2.83 5.92 71.98 0.43 3.25 16 13 C 0.07 2.15 5.36 86.30 0.46 2.61 16 14 N -0.54 -15.65 4.63 -895.21 -4.15 -19.80 16 15 C 0.02 0.40 5.47 86.31 0.47 0.87 16 16 C 0.07 1.54 7.01 72.02 0.50 2.04 16 17 O -0.40 -9.74 10.83 -148.98 -1.61 -11.35 16 18 C 0.06 1.37 7.01 72.01 0.50 1.87 16 19 C 0.02 0.47 5.62 86.31 0.49 0.95 16 20 C -0.06 -2.93 4.96 -19.87 -0.10 -3.03 16 21 C -0.12 -4.88 9.36 22.27 0.21 -4.67 16 22 C -0.12 -4.12 10.05 22.27 0.22 -3.90 16 23 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 24 C -0.12 -3.80 10.05 22.27 0.22 -3.58 16 25 C -0.15 -5.77 9.67 22.27 0.22 -5.56 16 26 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 28 H 0.04 1.36 6.39 -2.38 -0.02 1.34 16 29 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 30 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 2.10 6.55 -2.39 -0.02 2.09 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 1.99 8.04 -2.39 -0.02 1.97 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 4.55 7.73 -2.91 -0.02 4.53 16 40 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 41 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 43 H 0.11 4.28 8.05 -2.91 -0.02 4.26 16 Total: -1.00 -69.67 348.15 0.56 -69.11 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.91 Total: 24.71 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 4.61 Total: -30.52 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -3.85 Total: -77.11 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -2.98 Total: -30.56 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.86 Total: 44.36 kcal Total: -69.67 0.56 -69.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210207151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.947 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds