Wall clock time and date at job start Tue Mar 31 2020 07:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47257 * 300.00687 * 3 2 1 6 6 H 1.48503 * 109.47194 * 60.00359 * 3 2 1 7 7 C 1.37882 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99995 * 184.17785 * 7 2 1 9 9 C 1.50698 * 119.99749 * 4.18178 * 7 2 1 10 10 H 1.09002 * 109.47222 * 30.89910 * 9 7 2 11 11 O 1.42902 * 109.47320 * 150.90115 * 9 7 2 12 12 C 1.42898 * 114.00034 * 270.00242 * 11 9 7 13 13 C 1.53000 * 109.47028 * 179.97438 * 12 11 9 14 14 N 1.46897 * 109.47370 * 65.25352 * 13 12 11 15 15 C 1.47010 * 111.00303 * 199.39204 * 14 13 12 16 16 C 1.53093 * 109.25880 * 177.60775 * 15 14 13 17 17 O 1.43019 * 109.26033 * 56.85366 * 16 15 14 18 18 C 1.43017 * 113.73493 * 301.32871 * 17 16 15 19 19 C 1.47016 * 110.99832 * 75.76152 * 14 13 12 20 20 C 1.50703 * 109.47022 * 270.90384 * 9 7 2 21 21 C 1.38239 * 119.99785 * 279.05777 * 20 9 7 22 22 C 1.38236 * 120.00018 * 179.81469 * 21 20 9 23 23 C 1.38230 * 119.99953 * 0.38968 * 22 21 20 24 24 C 1.38238 * 119.99892 * 359.86147 * 23 22 21 25 25 C 1.38228 * 120.00033 * 359.95513 * 24 23 22 26 26 H 0.97000 * 120.00081 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47397 * 59.99327 * 12 11 9 28 28 H 1.09005 * 109.46858 * 299.99519 * 12 11 9 29 29 H 1.09002 * 109.47009 * 185.25854 * 13 12 11 30 30 H 1.09003 * 109.46607 * 305.25594 * 13 12 11 31 31 H 1.08993 * 109.50916 * 297.54822 * 15 14 13 32 32 H 1.09003 * 109.50247 * 57.67947 * 15 14 13 33 33 H 1.08997 * 109.51130 * 296.91430 * 16 15 14 34 34 H 1.09001 * 109.54348 * 176.80616 * 16 15 14 35 35 H 1.09001 * 109.50428 * 298.73359 * 18 17 16 36 36 H 1.09001 * 109.54092 * 178.62003 * 18 17 16 37 37 H 1.09002 * 109.50387 * 302.32808 * 19 14 13 38 38 H 1.08999 * 109.51012 * 62.40996 * 19 14 13 39 39 H 1.08005 * 119.99519 * 359.97438 * 21 20 9 40 40 H 1.07995 * 119.99998 * 180.23165 * 22 21 20 41 41 H 1.08000 * 120.00353 * 179.83983 * 23 22 21 42 42 H 1.08004 * 119.99831 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00049 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0824 -1.1953 0.0676 9 6 1.2541 -2.4974 -0.0963 10 1 0.3438 -2.3506 -0.6777 11 8 2.0764 -3.4746 -0.7374 12 6 1.9338 -3.5121 -2.1587 13 6 2.8561 -4.5880 -2.7356 14 7 2.4163 -5.9104 -2.2712 15 6 3.4947 -6.9007 -2.4030 16 6 3.0143 -8.2466 -1.8538 17 8 1.8280 -8.6427 -2.5474 18 6 0.7567 -7.7014 -2.4397 19 6 1.2143 -6.3499 -2.9947 20 6 0.8948 -2.9730 1.2878 21 6 1.8350 -3.6319 2.0580 22 6 1.5067 -4.0648 3.3291 23 6 0.2358 -3.8460 3.8270 24 6 -0.7058 -3.1918 3.0549 25 6 -0.3764 -2.7555 1.7853 26 1 -0.4850 0.8400 0.0004 27 1 2.2022 -2.5418 -2.5765 28 1 0.8999 -3.7442 -2.4141 29 1 2.8176 -4.5539 -3.8244 30 1 3.8781 -4.4072 -2.4022 31 1 3.7615 -7.0107 -3.4540 32 1 4.3658 -6.5674 -1.8387 33 1 2.7986 -8.1496 -0.7898 34 1 3.7899 -8.9982 -2.0009 35 1 0.4754 -7.5885 -1.3927 36 1 -0.1007 -8.0578 -3.0106 37 1 0.4207 -5.6145 -2.8625 38 1 1.4443 -6.4503 -4.0554 39 1 2.8268 -3.8060 1.6674 40 1 2.2423 -4.5762 3.9321 41 1 -0.0215 -4.1865 4.8191 42 1 -1.6989 -3.0212 3.4437 43 1 -1.1120 -2.2440 1.1822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210207171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:24 Heat of formation + Delta-G solvation = -60.684435 kcal Electronic energy + Delta-G solvation = -23747.907571 eV Core-core repulsion = 20372.120136 eV Total energy + Delta-G solvation = -3375.787435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.45939 -38.32569 -36.76525 -35.33732 -32.87071 -31.17080 -30.76959 -29.88546 -29.33434 -26.58948 -25.75491 -23.97132 -22.99323 -21.72349 -21.19661 -20.23664 -20.05266 -16.80663 -16.50728 -16.12503 -15.97637 -15.53775 -15.05722 -14.97357 -14.64676 -14.40767 -14.18276 -14.06609 -13.56950 -13.10343 -13.01766 -12.57640 -12.37583 -12.19893 -11.78508 -11.71042 -11.53114 -11.34436 -11.14064 -11.07888 -10.95576 -10.59944 -10.39137 -10.21515 -10.11594 -9.86192 -9.62691 -9.38923 -8.60840 -8.32126 -8.13602 -7.92762 -7.55501 -6.16142 -4.23310 2.41207 2.42331 3.22338 3.30858 3.35595 3.81134 3.97311 4.31217 4.68807 4.90371 4.97429 5.04675 5.16177 5.18203 5.18649 5.29974 5.57707 5.61445 5.64639 5.74242 5.74761 5.83015 5.84025 5.86579 5.92036 6.01666 6.02102 6.36450 6.39220 6.47978 6.55621 6.67054 6.98181 7.07494 7.09789 7.16741 7.20312 7.21258 7.42580 7.56196 7.76378 7.82296 8.03804 8.16317 8.41775 8.99846 9.44894 10.88281 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.005152 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.866068 B = 5433.329163 C = 6699.351586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.064 0.936 9 C 0.236 3.764 10 H 0.046 0.954 11 O -0.382 6.382 12 C 0.084 3.916 13 C 0.059 3.941 14 N -0.522 5.522 15 C 0.020 3.980 16 C 0.064 3.936 17 O -0.391 6.391 18 C 0.064 3.936 19 C 0.017 3.983 20 C -0.024 4.024 21 C -0.104 4.104 22 C -0.137 4.137 23 C -0.152 4.152 24 C -0.134 4.134 25 C -0.103 4.103 26 H 0.264 0.736 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -11.590 -3.476 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.082 0.918 9 C 0.180 3.820 10 H 0.064 0.936 11 O -0.302 6.302 12 C 0.006 3.994 13 C -0.068 4.068 14 N -0.248 5.248 15 C -0.109 4.109 16 C -0.013 4.013 17 O -0.310 6.310 18 C -0.013 4.013 19 C -0.111 4.111 20 C -0.025 4.025 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.170 4.170 24 C -0.152 4.152 25 C -0.121 4.121 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.930 -11.711 -2.982 12.238 hybrid contribution 0.461 1.603 -0.688 1.804 sum 2.392 -10.109 -3.670 11.017 Atomic orbital electron populations 1.69910 1.05960 1.27068 1.49205 1.24986 0.94914 0.99390 0.94273 0.86475 0.80315 0.83237 0.77674 1.19555 1.20854 1.20867 1.21537 0.93951 0.89915 1.50849 0.91758 1.18755 0.91240 0.85276 0.86695 0.93592 1.87766 1.66646 1.59328 1.16457 1.22097 0.96713 0.96004 0.84580 1.22225 1.00284 0.88037 0.96289 1.62125 1.04478 1.01916 1.56244 1.22766 0.95225 0.93213 0.99660 1.22650 0.87216 0.94928 0.96503 1.87930 1.22906 1.45531 1.74588 1.22655 0.89376 0.87782 1.01452 1.22819 0.94748 0.97932 0.95596 1.20326 0.91964 0.92109 0.98099 1.20896 0.99603 0.98275 0.93409 1.20946 0.96263 1.02002 0.96278 1.20803 0.94381 1.02618 0.99192 1.20953 0.98655 1.00386 0.95210 1.21041 0.96812 0.98684 0.95566 0.92632 0.93165 0.95036 0.94080 0.90155 0.94635 0.89610 0.92044 0.88873 0.91948 0.88772 0.89346 0.94544 0.86711 0.87718 0.87856 0.87616 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 12.93 55.43 0.72 -23.41 16 2 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.10 8.62 -34.44 -0.30 -14.40 16 8 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 9 C 0.24 5.88 2.30 -29.03 -0.07 5.81 16 10 H 0.05 1.23 7.06 -51.93 -0.37 0.86 16 11 O -0.38 -8.62 9.21 -35.23 -0.32 -8.95 16 12 C 0.08 1.59 5.93 37.16 0.22 1.81 16 13 C 0.06 0.90 5.38 -3.83 -0.02 0.88 16 14 N -0.52 -7.78 4.61 -234.31 -1.08 -8.86 16 15 C 0.02 0.25 5.60 -3.72 -0.02 0.23 16 16 C 0.06 0.76 7.01 37.21 0.26 1.02 16 17 O -0.39 -5.24 10.83 -35.23 -0.38 -5.62 16 18 C 0.06 0.80 7.01 37.21 0.26 1.06 16 19 C 0.02 0.23 5.47 -3.71 -0.02 0.21 16 20 C -0.02 -0.58 4.96 -104.62 -0.52 -1.10 16 21 C -0.10 -2.28 9.36 -39.58 -0.37 -2.65 16 22 C -0.14 -2.63 10.05 -39.59 -0.40 -3.03 16 23 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 24 C -0.13 -2.65 10.05 -39.58 -0.40 -3.04 16 25 C -0.10 -2.34 9.67 -39.59 -0.38 -2.72 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.59 6.69 -51.93 -0.35 0.24 16 29 H 0.04 0.55 7.99 -51.93 -0.41 0.14 16 30 H 0.08 1.22 7.86 -51.93 -0.41 0.81 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 1.02 8.02 -51.93 -0.42 0.60 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.22 6.74 -51.93 -0.35 0.87 16 38 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 39 H 0.11 2.51 7.75 -52.48 -0.41 2.10 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.12 2.91 8.04 -52.48 -0.42 2.49 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -29.15 352.77 -9.93 -39.07 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.90 Total: 4.00 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.25 Total: -17.41 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: -0.36 Total: -32.27 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.71 Total: -14.57 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.15 -9.93 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210207171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.610 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds