Wall clock time and date at job start Tue Mar 31 2020 07:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47257 * 300.00687 * 3 2 1 6 6 H 1.48503 * 109.47194 * 60.00359 * 3 2 1 7 7 C 1.37882 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99995 * 184.17785 * 7 2 1 9 9 C 1.50698 * 119.99749 * 4.18178 * 7 2 1 10 10 H 1.09002 * 109.47222 * 30.89910 * 9 7 2 11 11 O 1.42902 * 109.47320 * 150.90115 * 9 7 2 12 12 C 1.42898 * 114.00034 * 270.00242 * 11 9 7 13 13 C 1.53000 * 109.47028 * 179.97438 * 12 11 9 14 14 N 1.46897 * 109.47370 * 65.25352 * 13 12 11 15 15 C 1.47010 * 111.00303 * 199.39204 * 14 13 12 16 16 C 1.53093 * 109.25880 * 177.60775 * 15 14 13 17 17 O 1.43019 * 109.26033 * 56.85366 * 16 15 14 18 18 C 1.43017 * 113.73493 * 301.32871 * 17 16 15 19 19 C 1.47016 * 110.99832 * 75.76152 * 14 13 12 20 20 C 1.50703 * 109.47022 * 270.90384 * 9 7 2 21 21 C 1.38239 * 119.99785 * 279.05777 * 20 9 7 22 22 C 1.38236 * 120.00018 * 179.81469 * 21 20 9 23 23 C 1.38230 * 119.99953 * 0.38968 * 22 21 20 24 24 C 1.38238 * 119.99892 * 359.86147 * 23 22 21 25 25 C 1.38228 * 120.00033 * 359.95513 * 24 23 22 26 26 H 0.97000 * 120.00081 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47397 * 59.99327 * 12 11 9 28 28 H 1.09005 * 109.46858 * 299.99519 * 12 11 9 29 29 H 1.09002 * 109.47009 * 185.25854 * 13 12 11 30 30 H 1.09003 * 109.46607 * 305.25594 * 13 12 11 31 31 H 1.08993 * 109.50916 * 297.54822 * 15 14 13 32 32 H 1.09003 * 109.50247 * 57.67947 * 15 14 13 33 33 H 1.08997 * 109.51130 * 296.91430 * 16 15 14 34 34 H 1.09001 * 109.54348 * 176.80616 * 16 15 14 35 35 H 1.09001 * 109.50428 * 298.73359 * 18 17 16 36 36 H 1.09001 * 109.54092 * 178.62003 * 18 17 16 37 37 H 1.09002 * 109.50387 * 302.32808 * 19 14 13 38 38 H 1.08999 * 109.51012 * 62.40996 * 19 14 13 39 39 H 1.08005 * 119.99519 * 359.97438 * 21 20 9 40 40 H 1.07995 * 119.99998 * 180.23165 * 22 21 20 41 41 H 1.08000 * 120.00353 * 179.83983 * 23 22 21 42 42 H 1.08004 * 119.99831 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00049 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0824 -1.1953 0.0676 9 6 1.2541 -2.4974 -0.0963 10 1 0.3438 -2.3506 -0.6777 11 8 2.0764 -3.4746 -0.7374 12 6 1.9338 -3.5121 -2.1587 13 6 2.8561 -4.5880 -2.7356 14 7 2.4163 -5.9104 -2.2712 15 6 3.4947 -6.9007 -2.4030 16 6 3.0143 -8.2466 -1.8538 17 8 1.8280 -8.6427 -2.5474 18 6 0.7567 -7.7014 -2.4397 19 6 1.2143 -6.3499 -2.9947 20 6 0.8948 -2.9730 1.2878 21 6 1.8350 -3.6319 2.0580 22 6 1.5067 -4.0648 3.3291 23 6 0.2358 -3.8460 3.8270 24 6 -0.7058 -3.1918 3.0549 25 6 -0.3764 -2.7555 1.7853 26 1 -0.4850 0.8400 0.0004 27 1 2.2022 -2.5418 -2.5765 28 1 0.8999 -3.7442 -2.4141 29 1 2.8176 -4.5539 -3.8244 30 1 3.8781 -4.4072 -2.4022 31 1 3.7615 -7.0107 -3.4540 32 1 4.3658 -6.5674 -1.8387 33 1 2.7986 -8.1496 -0.7898 34 1 3.7899 -8.9982 -2.0009 35 1 0.4754 -7.5885 -1.3927 36 1 -0.1007 -8.0578 -3.0106 37 1 0.4207 -5.6145 -2.8625 38 1 1.4443 -6.4503 -4.0554 39 1 2.8268 -3.8060 1.6674 40 1 2.2423 -4.5762 3.9321 41 1 -0.0215 -4.1865 4.8191 42 1 -1.6989 -3.0212 3.4437 43 1 -1.1120 -2.2440 1.1822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210207171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:23 Heat of formation + Delta-G solvation = -78.523458 kcal Electronic energy + Delta-G solvation = -23748.681129 eV Core-core repulsion = 20372.120136 eV Total energy + Delta-G solvation = -3376.560993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53803 -39.97646 -38.31946 -36.62942 -34.81882 -32.49306 -32.11668 -31.50456 -30.69768 -28.45614 -27.05292 -24.99957 -24.81999 -23.26044 -22.60328 -21.79832 -21.30033 -18.75663 -17.72333 -17.57608 -17.35875 -17.02630 -16.33584 -16.22466 -16.01994 -15.94318 -15.53555 -15.50404 -15.15190 -14.66300 -14.52257 -14.06340 -13.96106 -13.46177 -13.37857 -13.06505 -12.98594 -12.89038 -12.82488 -12.55361 -12.32466 -12.11998 -11.82865 -11.80459 -11.62129 -11.50644 -11.27370 -10.64215 -10.63474 -10.10404 -9.55398 -9.29830 -9.24251 -8.18747 -6.34215 0.77111 0.79983 1.36210 1.38462 1.49925 2.36287 2.75829 2.97235 3.01833 3.18015 3.33576 3.93215 4.01553 4.04159 4.20905 4.24758 4.29086 4.32840 4.38033 4.44439 4.46154 4.54683 4.61479 4.70150 4.73875 4.77671 4.83033 4.88171 4.93789 4.97355 5.01563 5.04686 5.21465 5.42914 5.45450 5.64132 5.81404 5.90077 5.99144 6.04968 6.08844 6.17767 6.19521 6.40496 6.51504 7.01181 7.38577 8.83981 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.005152 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.866068 B = 5433.329163 C = 6699.351586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.246 3.754 10 H 0.013 0.987 11 O -0.390 6.390 12 C 0.080 3.920 13 C 0.071 3.929 14 N -0.546 5.546 15 C 0.021 3.979 16 C 0.063 3.937 17 O -0.400 6.400 18 C 0.067 3.933 19 C 0.018 3.982 20 C -0.055 4.055 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.133 4.133 25 C -0.126 4.126 26 H 0.266 0.734 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.121 0.879 35 H 0.049 0.951 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 -12.749 -2.359 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.068 0.932 9 C 0.190 3.810 10 H 0.031 0.969 11 O -0.310 6.310 12 C 0.002 3.998 13 C -0.057 4.057 14 N -0.272 5.272 15 C -0.106 4.106 16 C -0.013 4.013 17 O -0.319 6.319 18 C -0.010 4.010 19 C -0.110 4.110 20 C -0.055 4.055 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.144 4.144 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.614 -12.886 -1.874 13.281 hybrid contribution 0.224 1.880 -1.008 2.145 sum 2.838 -11.006 -2.882 11.726 Atomic orbital electron populations 1.70021 1.07008 1.27739 1.49713 1.25676 0.95709 1.02243 0.93954 0.85559 0.79081 0.79498 0.77868 1.19386 1.19951 1.20587 1.21675 0.93361 0.91423 1.51436 0.93150 1.18474 0.89751 0.85388 0.87422 0.96911 1.87737 1.66234 1.58617 1.18371 1.22269 0.97680 0.96919 0.82882 1.22060 0.98987 0.87400 0.97212 1.62049 1.05769 1.02212 1.57131 1.22812 0.94587 0.92816 1.00427 1.22783 0.87435 0.95369 0.95751 1.87921 1.23400 1.45805 1.74746 1.22693 0.89981 0.87346 1.01002 1.22817 0.93951 0.98071 0.96131 1.20336 0.93235 0.94150 0.97814 1.20932 0.98937 0.99101 0.94837 1.21340 0.97532 1.00776 0.95144 1.21286 0.93369 1.00657 1.00577 1.21290 1.00449 0.99414 0.93887 1.21003 0.96205 1.00088 0.97141 0.92518 0.94630 0.95410 0.91762 0.90092 0.93622 0.89131 0.93045 0.86078 0.93311 0.86489 0.90574 0.93453 0.87526 0.84119 0.83458 0.84768 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.24 12.93 21.45 0.28 -50.96 16 2 C 0.03 1.38 5.45 84.66 0.46 1.84 16 3 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.29 8.62 25.60 0.22 -30.07 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 9 C 0.25 12.92 2.30 29.10 0.07 12.99 16 10 H 0.01 0.75 7.06 -2.39 -0.02 0.73 16 11 O -0.39 -18.46 9.21 -148.98 -1.37 -19.83 16 12 C 0.08 3.17 5.93 71.98 0.43 3.60 16 13 C 0.07 2.17 5.38 86.30 0.46 2.63 16 14 N -0.55 -16.07 4.61 -895.23 -4.13 -20.20 16 15 C 0.02 0.50 5.60 86.31 0.48 0.99 16 16 C 0.06 1.40 7.01 72.01 0.50 1.90 16 17 O -0.40 -10.10 10.83 -148.98 -1.61 -11.71 16 18 C 0.07 1.61 7.01 72.02 0.50 2.12 16 19 C 0.02 0.48 5.47 86.31 0.47 0.96 16 20 C -0.05 -2.69 4.96 -19.87 -0.10 -2.79 16 21 C -0.12 -5.27 9.36 22.27 0.21 -5.06 16 22 C -0.13 -4.67 10.05 22.27 0.22 -4.45 16 23 C -0.14 -4.73 10.05 22.27 0.22 -4.51 16 24 C -0.13 -5.02 10.05 22.27 0.22 -4.79 16 25 C -0.13 -5.87 9.67 22.27 0.22 -5.65 16 26 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 1.10 6.69 -2.38 -0.02 1.09 16 29 H 0.06 1.66 7.99 -2.39 -0.02 1.64 16 30 H 0.08 2.45 7.86 -2.39 -0.02 2.43 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 2.03 8.02 -2.39 -0.02 2.01 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 2.16 6.74 -2.39 -0.02 2.15 16 38 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 39 H 0.11 4.75 7.75 -2.91 -0.02 4.73 16 40 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 43 H 0.10 5.02 8.04 -2.91 -0.02 5.00 16 Total: -1.00 -64.67 352.77 0.76 -63.90 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.97 Total: 23.53 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 4.60 Total: -30.31 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -3.85 Total: -71.16 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -2.99 Total: -31.54 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.67 0.76 -63.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210207171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.619 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds