Wall clock time and date at job start Tue Mar 31 2020 08:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42904 * 114.34213 * 139.68581 * 12 11 10 14 14 C 1.42901 * 113.99749 * 116.07334 * 13 12 11 15 15 C 1.52999 * 109.46930 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.47215 * 65.00105 * 15 14 13 17 17 C 1.42899 * 114.00323 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47442 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.99581 * 269.72234 * 18 17 16 20 20 C 1.38237 * 119.99581 * 179.76103 * 19 18 17 21 21 C 1.38236 * 119.99808 * 0.51587 * 20 19 18 22 22 C 1.38230 * 120.00419 * 359.73811 * 21 20 19 23 23 C 1.38236 * 119.99951 * 89.99926 * 18 17 16 24 24 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 29 29 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 30 30 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 31 31 H 1.08997 * 109.47278 * 299.99818 * 14 13 12 32 32 H 1.08998 * 109.47119 * 59.99986 * 14 13 12 33 33 H 1.09000 * 109.47447 * 184.99800 * 15 14 13 34 34 H 1.08998 * 109.47105 * 305.00145 * 15 14 13 35 35 H 1.09006 * 109.46782 * 300.00024 * 17 16 15 36 36 H 1.09009 * 109.47262 * 59.99256 * 17 16 15 37 37 H 1.07997 * 120.00805 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.99881 * 180.22922 * 20 19 18 39 39 H 1.07999 * 119.99903 * 179.72164 * 21 20 19 40 40 H 1.08002 * 120.00377 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00034 * 0.02562 * 23 18 17 42 42 H 1.09000 * 113.47556 * 253.46531 * 24 10 9 43 43 H 1.08997 * 113.47949 * 23.93922 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7500 -6.4412 -1.7009 14 6 2.5929 -7.4773 -2.2091 15 6 1.7756 -8.4018 -3.1137 16 8 1.3344 -7.6757 -4.2627 17 6 0.5573 -8.4513 -5.1774 18 6 0.1474 -7.5902 -6.3443 19 6 -1.0414 -6.8863 -6.2997 20 6 -1.4150 -6.0925 -7.3680 21 6 -0.6050 -6.0112 -8.4852 22 6 0.5813 -6.7192 -8.5319 23 6 0.9575 -7.5089 -7.4614 24 6 1.5184 -4.8986 0.2386 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 1.6756 -3.8466 -2.0765 29 1 3.4598 -3.7930 -1.7440 30 1 3.3715 -5.8925 -0.4639 31 1 3.4075 -7.0347 -2.7823 32 1 3.0032 -8.0519 -1.3787 33 1 2.3949 -9.2411 -3.4301 34 1 0.9106 -8.7749 -2.5655 35 1 1.1511 -9.2920 -5.5366 36 1 -0.3331 -8.8252 -4.6717 37 1 -1.6763 -6.9530 -5.4286 38 1 -2.3421 -5.5396 -7.3317 39 1 -0.8990 -5.3946 -9.3217 40 1 1.2140 -6.6560 -9.4049 41 1 1.8839 -8.0627 -7.4982 42 1 1.6915 -5.3047 1.2352 43 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210517272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:19 Heat of formation + Delta-G solvation = -25.958427 kcal Electronic energy + Delta-G solvation = -22178.270795 eV Core-core repulsion = 18803.989192 eV Total energy + Delta-G solvation = -3374.281602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58831 -39.41896 -37.92911 -36.29422 -32.82800 -32.28733 -31.05302 -29.98340 -28.67999 -26.02503 -25.31682 -24.89790 -22.74236 -22.63050 -21.49665 -21.46975 -19.34012 -17.20743 -17.11998 -16.81005 -16.25097 -15.85599 -15.68880 -15.22043 -14.93487 -14.62166 -14.38587 -14.20888 -13.58981 -13.48362 -13.33545 -12.82494 -12.82232 -12.40316 -12.12103 -11.99419 -11.91451 -11.29548 -11.23782 -11.19932 -11.04469 -10.92688 -10.75168 -10.52207 -10.12768 -9.79419 -9.67346 -9.18425 -9.06372 -9.05646 -8.99069 -8.38486 -7.86234 -5.98604 -3.99802 1.10446 1.25851 3.36191 3.37435 3.40390 3.44102 3.78698 3.92867 4.47410 4.61359 4.63511 4.84445 4.92049 4.93326 4.97692 5.06032 5.06972 5.13868 5.15966 5.23200 5.34985 5.36513 5.40185 5.44764 5.48752 5.68154 5.80326 5.87999 5.97907 6.16305 6.23304 6.28166 6.35465 6.42647 6.42974 6.47455 6.66571 6.82361 7.03762 7.26272 7.51821 7.70093 7.90760 8.15629 8.50434 9.07006 9.63737 11.12571 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003153 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.714716 B = 8879.599731 C =10433.594122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.162 3.838 10 N -0.465 5.465 11 C -0.003 4.003 12 C 0.051 3.949 13 O -0.367 6.367 14 C 0.063 3.937 15 C 0.064 3.936 16 O -0.369 6.369 17 C 0.102 3.898 18 C -0.090 4.090 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.002 4.002 25 H 0.262 0.738 26 H 0.029 0.971 27 H 0.005 0.995 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -20.734 -13.843 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.036 3.964 10 N -0.189 5.189 11 C -0.133 4.133 12 C -0.007 4.007 13 O -0.285 6.285 14 C -0.014 4.014 15 C -0.013 4.013 16 O -0.289 6.289 17 C 0.026 3.974 18 C -0.090 4.090 19 C -0.113 4.113 20 C -0.140 4.140 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.118 4.118 24 C -0.132 4.132 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.039 -20.145 -13.468 24.254 hybrid contribution -0.155 0.594 -0.396 0.730 sum 0.884 -19.551 -13.864 23.984 Atomic orbital electron populations 1.69955 1.06070 1.26880 1.51073 1.25012 0.94901 0.99373 0.95456 0.86522 0.79406 0.82596 0.78660 1.21334 1.20159 1.20250 1.21068 0.93550 0.89788 1.49968 0.91925 1.20252 0.90581 0.88837 0.96774 1.68946 1.33705 1.01588 1.14709 1.24219 1.02272 0.92728 0.94054 1.24002 0.96243 0.88689 0.91784 1.88025 1.35891 1.39727 1.64844 1.22503 0.93433 0.89861 0.95597 1.22558 0.98258 0.93802 0.86642 1.88103 1.70932 1.37329 1.32495 1.21289 0.95007 0.92399 0.88700 1.19596 0.95264 0.99485 0.94675 1.21119 0.96316 0.95592 0.98316 1.21193 1.00157 0.98923 0.93760 1.21209 0.94821 0.99038 0.98278 1.21135 0.97002 0.97532 0.98700 1.21038 0.98754 0.98782 0.93256 1.24037 0.98069 0.93041 0.98029 0.92874 0.95298 0.97678 0.91009 0.90730 0.88990 0.92497 0.91936 0.92106 0.92429 0.92702 0.92464 0.85782 0.85788 0.86029 0.85988 0.86073 0.90456 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.97 9.39 -34.44 -0.32 -15.30 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.16 4.45 4.57 -4.98 -0.02 4.43 16 10 N -0.47 -10.76 6.32 -246.08 -1.55 -12.32 16 11 C 0.00 -0.07 7.56 -7.54 -0.06 -0.12 16 12 C 0.05 0.87 4.65 -26.20 -0.12 0.74 16 13 O -0.37 -6.00 10.36 -40.08 -0.42 -6.42 16 14 C 0.06 0.76 6.16 37.16 0.23 0.99 16 15 C 0.06 0.67 6.32 37.16 0.23 0.91 16 16 O -0.37 -4.90 10.29 -40.08 -0.41 -5.31 16 17 C 0.10 1.05 6.06 36.00 0.22 1.27 16 18 C -0.09 -1.02 5.51 -104.62 -0.58 -1.60 16 19 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 20 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 21 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 22 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 24 C 0.00 -0.05 7.52 -7.53 -0.06 -0.10 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.03 0.84 8.08 -51.92 -0.42 0.42 16 27 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 28 H 0.07 1.60 7.42 -51.93 -0.39 1.21 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.35 7.88 -51.93 -0.41 0.94 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.06 0.52 8.08 -51.92 -0.42 0.10 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.38 7.91 -51.93 -0.41 0.96 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -33.87 363.88 -10.76 -44.63 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.04 Total: -1.54 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.53 Total: -14.99 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.82 Total: -39.20 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.83 Total: -11.73 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.87 -10.76 -44.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210517272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.672 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds