Wall clock time and date at job start Tue Mar 31 2020 08:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42904 * 114.34213 * 139.68581 * 12 11 10 14 14 C 1.42901 * 113.99749 * 116.07334 * 13 12 11 15 15 C 1.52999 * 109.46930 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.47215 * 65.00105 * 15 14 13 17 17 C 1.42899 * 114.00323 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47442 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.99581 * 269.72234 * 18 17 16 20 20 C 1.38237 * 119.99581 * 179.76103 * 19 18 17 21 21 C 1.38236 * 119.99808 * 0.51587 * 20 19 18 22 22 C 1.38230 * 120.00419 * 359.73811 * 21 20 19 23 23 C 1.38236 * 119.99951 * 89.99926 * 18 17 16 24 24 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 29 29 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 30 30 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 31 31 H 1.08997 * 109.47278 * 299.99818 * 14 13 12 32 32 H 1.08998 * 109.47119 * 59.99986 * 14 13 12 33 33 H 1.09000 * 109.47447 * 184.99800 * 15 14 13 34 34 H 1.08998 * 109.47105 * 305.00145 * 15 14 13 35 35 H 1.09006 * 109.46782 * 300.00024 * 17 16 15 36 36 H 1.09009 * 109.47262 * 59.99256 * 17 16 15 37 37 H 1.07997 * 120.00805 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.99881 * 180.22922 * 20 19 18 39 39 H 1.07999 * 119.99903 * 179.72164 * 21 20 19 40 40 H 1.08002 * 120.00377 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00034 * 0.02562 * 23 18 17 42 42 H 1.09000 * 113.47556 * 253.46531 * 24 10 9 43 43 H 1.08997 * 113.47949 * 23.93922 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7500 -6.4412 -1.7009 14 6 2.5929 -7.4773 -2.2091 15 6 1.7756 -8.4018 -3.1137 16 8 1.3344 -7.6757 -4.2627 17 6 0.5573 -8.4513 -5.1774 18 6 0.1474 -7.5902 -6.3443 19 6 -1.0414 -6.8863 -6.2997 20 6 -1.4150 -6.0925 -7.3680 21 6 -0.6050 -6.0112 -8.4852 22 6 0.5813 -6.7192 -8.5319 23 6 0.9575 -7.5089 -7.4614 24 6 1.5184 -4.8986 0.2386 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 1.6756 -3.8466 -2.0765 29 1 3.4598 -3.7930 -1.7440 30 1 3.3715 -5.8925 -0.4639 31 1 3.4075 -7.0347 -2.7823 32 1 3.0032 -8.0519 -1.3787 33 1 2.3949 -9.2411 -3.4301 34 1 0.9106 -8.7749 -2.5655 35 1 1.1511 -9.2920 -5.5366 36 1 -0.3331 -8.8252 -4.6717 37 1 -1.6763 -6.9530 -5.4286 38 1 -2.3421 -5.5396 -7.3317 39 1 -0.8990 -5.3946 -9.3217 40 1 1.2140 -6.6560 -9.4049 41 1 1.8839 -8.0627 -7.4982 42 1 1.6915 -5.3047 1.2352 43 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210517272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:18 Heat of formation + Delta-G solvation = -49.251641 kcal Electronic energy + Delta-G solvation = -22179.280864 eV Core-core repulsion = 18803.989192 eV Total energy + Delta-G solvation = -3375.291672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05830 -40.29049 -38.87028 -37.53991 -35.02596 -33.11488 -31.81515 -31.40022 -30.19879 -27.12942 -26.84382 -26.66391 -23.68799 -23.51004 -23.29572 -22.24366 -20.93823 -18.70811 -18.15423 -17.96710 -17.62209 -17.01476 -16.78452 -16.40176 -16.25567 -16.15420 -15.59971 -15.33323 -14.87595 -14.77057 -14.30751 -14.12551 -14.08786 -13.69475 -13.65289 -13.27888 -13.09534 -12.93304 -12.82397 -12.51946 -12.28222 -12.09731 -11.97369 -11.90423 -11.82475 -11.60593 -11.23641 -10.64158 -10.58873 -10.37838 -9.84914 -9.78489 -9.77066 -8.25058 -6.36651 0.32093 0.47219 1.38474 1.43077 1.51218 2.37469 2.58542 2.62535 3.06688 3.14545 3.39181 3.49548 3.84501 3.89979 3.96694 4.12505 4.19835 4.21745 4.27025 4.32501 4.34705 4.42902 4.50179 4.56150 4.63050 4.63504 4.65838 4.70422 4.74960 4.83143 4.85519 4.93388 5.04841 5.06095 5.12654 5.52050 5.52800 5.58408 5.64261 5.71525 6.02706 6.07424 6.22375 6.36139 6.38481 6.76922 7.32905 8.86489 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003153 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.714716 B = 8879.599731 C =10433.594122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.177 3.823 10 N -0.477 5.477 11 C -0.013 4.013 12 C 0.085 3.915 13 O -0.389 6.389 14 C 0.053 3.947 15 C 0.061 3.939 16 O -0.405 6.405 17 C 0.102 3.898 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.110 4.110 24 C -0.007 4.007 25 H 0.266 0.734 26 H 0.003 0.997 27 H -0.027 1.027 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -21.690 -14.350 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.050 3.950 10 N -0.201 5.201 11 C -0.142 4.142 12 C 0.026 3.974 13 O -0.307 6.307 14 C -0.023 4.023 15 C -0.015 4.015 16 O -0.325 6.325 17 C 0.026 3.974 18 C -0.110 4.110 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.128 4.128 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.021 0.979 27 H -0.009 1.009 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.120 0.880 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.057 -21.135 -13.979 25.524 hybrid contribution -0.814 0.800 -0.294 1.179 sum 2.243 -20.335 -14.274 24.946 Atomic orbital electron populations 1.70089 1.07854 1.28196 1.51403 1.26021 0.95865 1.03538 0.94459 0.85340 0.78128 0.77333 0.79242 1.20432 1.18969 1.19253 1.21399 0.93668 0.91094 1.50715 0.92039 1.19903 0.90594 0.90547 0.93940 1.68838 1.32820 1.01912 1.16551 1.24259 1.01573 0.95998 0.92375 1.23692 0.96660 0.87108 0.89909 1.88009 1.37365 1.40607 1.64735 1.22894 0.93236 0.89254 0.96963 1.22739 0.98848 0.94087 0.85832 1.88049 1.71546 1.39278 1.33631 1.21407 0.95406 0.92520 0.88071 1.19882 0.95457 0.99977 0.95638 1.21306 0.97006 0.96637 0.98809 1.21457 1.00987 0.99066 0.94016 1.21544 0.94819 0.99192 0.98609 1.21506 0.97178 0.96863 0.99345 1.21338 0.99287 0.99065 0.93123 1.24103 0.97488 0.91546 1.00497 0.92494 0.97908 1.00894 0.93827 0.89813 0.85425 0.92489 0.88602 0.88512 0.92238 0.90229 0.91997 0.86086 0.84712 0.83910 0.83580 0.84334 0.87957 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.29 21.45 0.28 -58.42 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.98 45.94 29.54 68.60 2.03 47.97 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.53 -32.18 9.39 25.60 0.24 -31.94 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.18 10.21 4.57 85.55 0.39 10.60 16 10 N -0.48 -22.45 6.32 -932.85 -5.89 -28.34 16 11 C -0.01 -0.52 7.56 83.58 0.63 0.11 16 12 C 0.08 2.75 4.65 30.94 0.14 2.89 16 13 O -0.39 -12.24 10.36 -144.34 -1.50 -13.73 16 14 C 0.05 1.12 6.16 71.98 0.44 1.57 16 15 C 0.06 1.14 6.32 71.98 0.45 1.60 16 16 O -0.40 -10.36 10.29 -144.34 -1.49 -11.85 16 17 C 0.10 1.99 6.06 71.24 0.43 2.43 16 18 C -0.11 -2.47 5.51 -19.87 -0.11 -2.58 16 19 C -0.12 -2.82 9.70 22.27 0.22 -2.61 16 20 C -0.14 -2.93 10.05 22.27 0.22 -2.71 16 21 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 22 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 23 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16 24 C -0.01 -0.28 7.52 83.58 0.63 0.35 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.00 0.17 8.08 -2.38 -0.02 0.15 16 27 H -0.03 -1.67 7.30 -2.39 -0.02 -1.69 16 28 H 0.04 2.05 7.42 -2.39 -0.02 2.03 16 29 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.13 3.28 7.88 -2.39 -0.02 3.26 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.11 8.09 -2.38 -0.02 1.09 16 36 H 0.06 1.10 8.08 -2.38 -0.02 1.08 16 37 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.05 2.13 7.91 -2.39 -0.02 2.12 16 Total: -1.00 -75.46 363.88 -0.78 -76.23 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.96 Total: 14.19 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 4.82 Total: -26.06 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -5.61 Total: -86.76 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -2.98 Total: -25.58 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -75.46 -0.78 -76.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210517272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.982 kcal (2) G-P(sol) polarization free energy of solvation -75.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds