Wall clock time and date at job start Tue Mar 31 2020 08:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86801 * 120.00229 * 2 1 4 4 H 1.48502 * 109.47118 * 269.99692 * 3 2 1 5 5 H 1.48500 * 109.47103 * 29.99888 * 3 2 1 6 6 H 1.48501 * 109.47143 * 149.99986 * 3 2 1 7 7 C 1.38815 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64863 * 359.95268 * 9 7 2 11 11 C 1.55122 * 104.94726 * 204.04118 * 10 9 7 12 12 C 1.55158 * 101.48145 * 323.22621 * 11 10 9 13 13 H 1.09007 * 110.71776 * 276.82461 * 12 11 10 14 14 O 1.42905 * 110.71708 * 153.73553 * 12 11 10 15 15 C 1.42901 * 113.99688 * 152.43979 * 14 12 11 16 16 C 1.53009 * 109.46824 * 179.97438 * 15 14 12 17 17 O 1.42899 * 109.47113 * 64.99778 * 16 15 14 18 18 C 1.42903 * 113.99629 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46878 * 179.97438 * 18 17 16 20 20 C 1.38233 * 120.00099 * 269.72733 * 19 18 17 21 21 C 1.38234 * 119.99979 * 179.81297 * 20 19 18 22 22 C 1.38239 * 119.99981 * 0.41408 * 21 20 19 23 23 C 1.38240 * 119.99839 * 359.81825 * 22 21 20 24 24 C 1.38234 * 120.00218 * 359.97438 * 23 22 21 25 25 C 1.47022 * 125.64918 * 180.02562 * 9 7 2 26 26 H 0.97007 * 120.00304 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.36961 * 323.00958 * 10 9 7 28 28 H 1.09003 * 110.36581 * 85.32889 * 10 9 7 29 29 H 1.08993 * 111.16709 * 205.13486 * 11 10 9 30 30 H 1.09001 * 110.93713 * 81.21160 * 11 10 9 31 31 H 1.09000 * 109.47317 * 59.99739 * 15 14 12 32 32 H 1.09002 * 109.47468 * 299.99096 * 15 14 12 33 33 H 1.09007 * 109.46516 * 304.99711 * 16 15 14 34 34 H 1.09004 * 109.47113 * 185.00179 * 16 15 14 35 35 H 1.09002 * 109.47382 * 59.99956 * 18 17 16 36 36 H 1.09001 * 109.46938 * 299.99942 * 18 17 16 37 37 H 1.08003 * 119.99927 * 359.97438 * 20 19 18 38 38 H 1.07995 * 120.00261 * 180.20628 * 21 20 19 39 39 H 1.07994 * 120.00087 * 179.79271 * 22 21 20 40 40 H 1.08000 * 119.99654 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.99943 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.88726 * 59.48411 * 25 9 7 43 43 H 1.09001 * 110.01443 * 298.38913 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1416 -2.5331 0.0010 11 6 -0.4048 -3.9347 0.6114 12 6 0.7783 -4.7523 0.0291 13 1 0.5476 -5.1010 -0.9776 14 8 1.1004 -5.8529 0.8818 15 6 1.6865 -6.9639 0.2005 16 6 1.9888 -8.0770 1.2059 17 8 0.7641 -8.5714 1.7516 18 6 0.9352 -9.6197 2.7076 19 6 -0.4132 -10.0618 3.2149 20 6 -0.9648 -9.4573 4.3289 21 6 -2.2034 -9.8602 4.7919 22 6 -2.8866 -10.8736 4.1460 23 6 -2.3328 -11.4814 3.0347 24 6 -1.0961 -11.0756 2.5692 25 6 1.9317 -3.7275 0.0016 26 1 -0.4851 0.8401 -0.0004 27 1 -0.5993 -1.7584 0.6161 28 1 -0.5276 -2.4875 -1.0174 29 1 -1.3605 -4.3370 0.2756 30 1 -0.3578 -3.9006 1.6998 31 1 2.6122 -6.6480 -0.2805 32 1 0.9929 -7.3343 -0.5544 33 1 2.6112 -7.6820 2.0089 34 1 2.5160 -8.8877 0.7029 35 1 1.5355 -9.2564 3.5417 36 1 1.4407 -10.4625 2.2361 37 1 -0.4292 -8.6683 4.8360 38 1 -2.6359 -9.3856 5.6603 39 1 -3.8528 -11.1907 4.5097 40 1 -2.8664 -12.2735 2.5304 41 1 -0.6634 -11.5508 1.7013 42 1 2.5581 -3.8503 0.8852 43 1 2.5298 -3.8670 -0.8989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210518402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:34 Heat of formation + Delta-G solvation = -56.682869 kcal Electronic energy + Delta-G solvation = -22362.675040 eV Core-core repulsion = 18987.061126 eV Total energy + Delta-G solvation = -3375.613914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31049 -39.90750 -38.63456 -37.31782 -34.25574 -33.04920 -31.78528 -31.33225 -30.36869 -28.69433 -26.80355 -26.30407 -23.52713 -23.47492 -22.22950 -22.05266 -21.78387 -18.98983 -18.21975 -17.87997 -17.51019 -16.95304 -16.67362 -16.43511 -16.23147 -15.79738 -15.34654 -15.21643 -15.00965 -14.40355 -14.28071 -14.25403 -13.66650 -13.59969 -13.35651 -13.21050 -12.99762 -12.90855 -12.65807 -12.45483 -12.30876 -12.02138 -11.90631 -11.88079 -11.82040 -11.71488 -11.32949 -10.77061 -10.58189 -10.46671 -9.81878 -9.75066 -8.92746 -7.79144 -5.24821 0.34840 0.50345 1.46369 1.49088 1.57936 2.46765 2.59935 2.70181 3.15606 3.31423 3.70065 3.82716 3.87311 3.92488 4.05720 4.15389 4.15965 4.22249 4.26729 4.30712 4.35815 4.45120 4.49070 4.59012 4.63512 4.66395 4.76070 4.79017 4.80497 4.99865 5.03417 5.05041 5.08658 5.15916 5.43522 5.55208 5.58015 5.61290 5.67783 5.75980 6.10206 6.22276 6.27273 6.39269 7.07788 7.74223 8.38546 9.23240 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.002594 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.296312 B =10793.616947 C =11333.864370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.985 3.015 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.625 5.625 10 C 0.156 3.844 11 C -0.126 4.126 12 C 0.092 3.908 13 H 0.082 0.918 14 O -0.386 6.386 15 C 0.053 3.947 16 C 0.065 3.935 17 O -0.400 6.400 18 C 0.100 3.900 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.111 4.111 25 C 0.115 3.885 26 H 0.249 0.751 27 H 0.077 0.923 28 H -0.004 1.004 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.136 0.864 42 H 0.026 0.974 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -25.671 5.386 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.813 3.187 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.353 5.353 10 C 0.031 3.969 11 C -0.165 4.165 12 C 0.034 3.966 13 H 0.100 0.900 14 O -0.305 6.305 15 C -0.024 4.024 16 C -0.011 4.011 17 O -0.320 6.320 18 C 0.024 3.976 19 C -0.109 4.109 20 C -0.136 4.136 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.129 4.129 25 C -0.011 4.011 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.014 0.986 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.044 0.956 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.095 -25.411 5.540 26.030 hybrid contribution 0.643 1.130 -0.239 1.322 sum -0.452 -24.281 5.301 24.857 Atomic orbital electron populations 1.70036 1.06296 1.25242 1.58373 1.25707 0.96733 1.01158 1.02444 0.84978 0.77535 0.78629 0.77555 1.21091 1.21778 1.19433 1.19480 0.91072 0.83631 1.42990 0.90075 1.44696 1.02776 1.00796 1.86995 1.21755 0.84182 0.94032 0.96892 1.22982 0.97460 0.95604 1.00428 1.22954 0.94088 0.85757 0.93797 0.90017 1.87976 1.81775 1.25324 1.35432 1.22820 0.98561 0.85930 0.95041 1.22660 0.86596 0.95226 0.96581 1.88027 1.30924 1.53959 1.59122 1.21422 0.93846 0.90377 0.91959 1.19845 0.97041 0.97541 0.96447 1.21302 0.96464 0.99104 0.96748 1.21450 0.94853 0.97940 1.00980 1.21547 1.00614 0.96023 0.95826 1.21492 0.95587 1.00749 0.97031 1.21320 0.95379 0.96779 0.99417 1.21856 0.95492 0.85637 0.98130 0.94138 0.90503 0.98569 0.89498 0.92204 0.90293 0.92073 0.92531 0.88618 0.92124 0.90476 0.86049 0.84443 0.83785 0.83678 0.84626 0.95623 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 10.09 21.65 0.22 -57.72 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 3 Si 0.99 46.47 29.55 68.60 2.03 48.50 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.24 -14.16 10.27 84.04 0.86 -13.29 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.63 -34.15 3.40 -691.57 -2.35 -36.50 16 10 C 0.16 8.15 5.89 86.93 0.51 8.66 16 11 C -0.13 -5.29 6.83 32.06 0.22 -5.07 16 12 C 0.09 3.51 3.41 31.78 0.11 3.62 16 13 H 0.08 2.78 7.85 -2.38 -0.02 2.77 16 14 O -0.39 -13.56 10.04 -144.34 -1.45 -15.01 16 15 C 0.05 1.34 6.17 71.99 0.44 1.78 16 16 C 0.07 1.39 6.32 71.99 0.45 1.84 16 17 O -0.40 -10.32 10.29 -144.34 -1.49 -11.80 16 18 C 0.10 1.96 6.06 71.24 0.43 2.39 16 19 C -0.11 -2.31 5.51 -19.86 -0.11 -2.42 16 20 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 21 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 22 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 23 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 24 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 25 C 0.11 5.09 7.02 86.73 0.61 5.70 16 26 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 27 H 0.08 4.52 5.87 -2.39 -0.01 4.51 16 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.10 1.34 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 36 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 37 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.03 1.17 8.06 -2.39 -0.02 1.15 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.73 356.69 3.03 -68.70 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.96 Total: 14.11 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.10 Total: -10.29 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -2.13 Total: -94.22 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -2.93 Total: -26.81 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -71.73 3.03 -68.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210518402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.018 kcal (2) G-P(sol) polarization free energy of solvation -71.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds