Wall clock time and date at job start Tue Mar 31 2020 08:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48507 * 109.47102 * 240.00036 * 3 2 1 5 5 H 1.48501 * 109.46869 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47584 * 119.99752 * 3 2 1 7 7 C 1.38816 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99617 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.64815 * 0.03608 * 9 7 2 11 11 C 1.54331 * 107.26863 * 181.02658 * 10 9 7 12 12 C 1.55154 * 102.94268 * 22.19551 * 11 10 9 13 13 H 1.09003 * 111.03444 * 82.58438 * 12 11 10 14 14 O 1.42896 * 111.00194 * 206.42288 * 12 11 10 15 15 C 1.42904 * 114.00000 * 203.65091 * 14 12 11 16 16 C 1.53002 * 109.47301 * 179.97438 * 15 14 12 17 17 O 1.42897 * 109.46633 * 65.00201 * 16 15 14 18 18 C 1.42900 * 113.99675 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47222 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99776 * 89.99927 * 19 18 17 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00240 * 0.02562 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00160 * 269.98143 * 19 18 17 25 25 C 1.47434 * 125.64838 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99832 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.88106 * 300.44500 * 10 9 7 28 28 H 1.08993 * 109.88070 * 61.45869 * 10 9 7 29 29 H 1.08995 * 110.71978 * 263.82947 * 11 10 9 30 30 H 1.09006 * 110.71719 * 140.56011 * 11 10 9 31 31 H 1.09009 * 109.47136 * 59.99587 * 15 14 12 32 32 H 1.09003 * 109.47423 * 300.00026 * 15 14 12 33 33 H 1.08990 * 109.47270 * 305.00119 * 16 15 14 34 34 H 1.09007 * 109.47047 * 184.99962 * 16 15 14 35 35 H 1.09001 * 109.47115 * 60.00145 * 18 17 16 36 36 H 1.09004 * 109.47452 * 299.99549 * 18 17 16 37 37 H 1.08005 * 120.00103 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 41 41 H 1.08000 * 120.00005 * 359.97438 * 24 19 18 42 42 H 1.08998 * 110.36673 * 37.06413 * 25 9 7 43 43 H 1.08994 * 110.45566 * 274.79120 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0007 11 6 -0.4484 -4.0442 0.0262 12 6 0.8514 -4.6560 0.6123 13 1 0.8558 -4.5963 1.7006 14 8 1.0247 -6.0054 0.1753 15 6 1.8448 -6.7952 1.0387 16 6 1.9599 -8.2135 0.4763 17 8 2.6528 -8.1756 -0.7728 18 6 2.8155 -9.4560 -1.3862 19 6 3.5543 -9.2981 -2.6902 20 6 4.9347 -9.3678 -2.7153 21 6 5.6123 -9.2236 -3.9115 22 6 4.9096 -9.0091 -5.0825 23 6 3.5296 -8.9334 -5.0565 24 6 2.8516 -9.0840 -3.8612 25 6 1.9335 -3.7312 0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5583 -2.0519 0.8823 28 1 -0.5537 -2.0824 -0.9018 29 1 -0.6307 -4.4184 -0.9812 30 1 -1.2991 -4.2514 0.6755 31 1 1.3959 -6.8336 2.0314 32 1 2.8371 -6.3490 1.1058 33 1 0.9626 -8.6268 0.3263 34 1 2.5107 -8.8392 1.1786 35 1 1.8360 -9.8956 -1.5749 36 1 3.3843 -10.1072 -0.7225 37 1 5.4837 -9.5350 -1.8004 38 1 6.6907 -9.2776 -3.9311 39 1 5.4391 -8.8960 -6.0170 40 1 2.9808 -8.7615 -5.9706 41 1 1.7731 -9.0303 -3.8417 42 1 2.8323 -3.7403 0.6182 43 1 2.1691 -4.0435 -1.0157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210518403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:40 Heat of formation + Delta-G solvation = -38.123777 kcal Electronic energy + Delta-G solvation = -22525.043028 eV Core-core repulsion = 19150.233896 eV Total energy + Delta-G solvation = -3374.809132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51446 -38.46685 -37.52417 -35.72275 -32.46600 -31.98381 -31.04291 -29.79111 -28.85784 -26.88869 -25.96085 -24.28161 -22.73033 -22.47090 -21.45257 -20.23477 -19.97782 -17.14933 -16.99276 -16.83328 -16.61733 -15.83507 -15.58326 -14.73768 -14.67710 -14.55833 -14.37901 -13.84807 -13.57167 -13.44293 -13.06623 -12.84471 -12.33108 -12.28073 -12.11017 -11.97683 -11.65064 -11.19772 -11.12952 -11.02373 -10.89973 -10.80343 -10.61857 -10.14170 -10.07591 -9.76347 -9.66083 -9.65117 -9.05321 -9.00600 -8.96787 -8.54464 -6.77616 -5.66005 -2.99510 1.11949 1.26901 3.40001 3.44498 3.48139 3.49743 3.93870 3.98731 4.56056 4.64387 4.66549 4.85660 4.95504 5.03417 5.10912 5.19923 5.20776 5.34639 5.38119 5.46469 5.49732 5.53348 5.56377 5.64977 5.80910 5.81536 5.84627 5.89089 5.94543 6.29259 6.34356 6.35815 6.44741 6.55264 6.60607 6.76524 6.83424 6.84546 7.11477 7.60576 7.67401 7.70915 7.87997 8.31212 9.27102 9.87278 10.53749 11.45811 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.003099 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.906503 B = 9032.269138 C = 9994.290447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.136 4.136 12 C 0.072 3.928 13 H 0.064 0.936 14 O -0.372 6.372 15 C 0.063 3.937 16 C 0.066 3.934 17 O -0.368 6.368 18 C 0.102 3.898 19 C -0.089 4.089 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.096 4.096 25 C 0.119 3.881 26 H 0.253 0.747 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.035 0.965 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -22.715 -3.086 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.175 4.175 12 C 0.013 3.987 13 H 0.082 0.918 14 O -0.290 6.290 15 C -0.014 4.014 16 C -0.011 4.011 17 O -0.287 6.287 18 C 0.025 3.975 19 C -0.089 4.089 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.114 4.114 25 C -0.008 4.008 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.054 0.946 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.589 -22.386 -3.332 23.312 hybrid contribution 0.505 0.801 0.351 1.010 sum 6.094 -21.585 -2.980 22.626 Atomic orbital electron populations 1.69948 1.04876 1.25109 1.57214 1.24806 0.95743 0.97641 1.02347 0.86176 0.78422 0.83134 0.77898 1.21158 1.21589 1.21194 1.19036 0.90448 0.82362 1.43695 0.90481 1.44360 1.01760 0.99774 1.87364 1.21162 0.84404 0.87711 1.01318 1.22963 0.95171 0.98769 1.00581 1.23401 0.97504 0.80411 0.97354 0.91755 1.87939 1.69319 1.22292 1.49455 1.22461 0.95671 0.90438 0.92809 1.22557 0.96309 0.96477 0.85752 1.88114 1.77421 1.27759 1.35454 1.21285 0.98520 0.86263 0.91399 1.19613 0.93800 1.01389 0.94089 1.21054 0.93555 0.99080 0.98082 1.21137 0.99897 1.00627 0.92676 1.21199 0.94434 0.99494 0.98300 1.21171 0.94559 1.00344 0.98051 1.21106 1.00190 0.97951 0.92125 1.21916 0.94459 0.86461 0.97921 0.93717 0.93432 0.93599 0.91504 0.91938 0.92131 0.92536 0.92525 0.92195 0.92522 0.92732 0.86033 0.85989 0.86071 0.85870 0.85814 0.94649 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.83 10.31 55.49 0.57 -27.25 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.23 -6.61 10.28 -15.06 -0.15 -6.77 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -16.44 3.39 -170.08 -0.58 -17.01 16 10 C 0.18 4.57 5.38 -3.06 -0.02 4.55 16 11 C -0.14 -2.80 6.69 -24.89 -0.17 -2.96 16 12 C 0.07 1.41 3.49 -24.60 -0.09 1.32 16 13 H 0.06 1.19 7.90 -51.93 -0.41 0.78 16 14 O -0.37 -6.68 10.12 -40.08 -0.41 -7.08 16 15 C 0.06 0.87 6.20 37.16 0.23 1.10 16 16 C 0.07 0.76 6.32 37.16 0.23 0.99 16 17 O -0.37 -5.15 10.29 -40.08 -0.41 -5.57 16 18 C 0.10 1.08 6.06 36.01 0.22 1.30 16 19 C -0.09 -1.02 5.51 -104.62 -0.58 -1.60 16 20 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16 21 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 25 C 0.12 2.74 6.97 -2.54 -0.02 2.72 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 28 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.70 8.11 -51.92 -0.42 0.28 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -33.52 357.39 -9.92 -43.43 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.06 Total: -2.11 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.39 Total: -7.41 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.01 Total: -44.27 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.82 Total: -12.65 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.52 -9.92 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210518403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.310 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds