Wall clock time and date at job start Tue Mar 31 2020 08:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48507 * 109.47102 * 240.00036 * 3 2 1 5 5 H 1.48501 * 109.46869 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47584 * 119.99752 * 3 2 1 7 7 C 1.38816 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99617 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.64815 * 0.03608 * 9 7 2 11 11 C 1.54331 * 107.26863 * 181.02658 * 10 9 7 12 12 C 1.55154 * 102.94268 * 22.19551 * 11 10 9 13 13 H 1.09003 * 111.03444 * 82.58438 * 12 11 10 14 14 O 1.42896 * 111.00194 * 206.42288 * 12 11 10 15 15 C 1.42904 * 114.00000 * 203.65091 * 14 12 11 16 16 C 1.53002 * 109.47301 * 179.97438 * 15 14 12 17 17 O 1.42897 * 109.46633 * 65.00201 * 16 15 14 18 18 C 1.42900 * 113.99675 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47222 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99776 * 89.99927 * 19 18 17 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00240 * 0.02562 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00160 * 269.98143 * 19 18 17 25 25 C 1.47434 * 125.64838 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99832 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.88106 * 300.44500 * 10 9 7 28 28 H 1.08993 * 109.88070 * 61.45869 * 10 9 7 29 29 H 1.08995 * 110.71978 * 263.82947 * 11 10 9 30 30 H 1.09006 * 110.71719 * 140.56011 * 11 10 9 31 31 H 1.09009 * 109.47136 * 59.99587 * 15 14 12 32 32 H 1.09003 * 109.47423 * 300.00026 * 15 14 12 33 33 H 1.08990 * 109.47270 * 305.00119 * 16 15 14 34 34 H 1.09007 * 109.47047 * 184.99962 * 16 15 14 35 35 H 1.09001 * 109.47115 * 60.00145 * 18 17 16 36 36 H 1.09004 * 109.47452 * 299.99549 * 18 17 16 37 37 H 1.08005 * 120.00103 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 41 41 H 1.08000 * 120.00005 * 359.97438 * 24 19 18 42 42 H 1.08998 * 110.36673 * 37.06413 * 25 9 7 43 43 H 1.08994 * 110.45566 * 274.79120 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0007 11 6 -0.4484 -4.0442 0.0262 12 6 0.8514 -4.6560 0.6123 13 1 0.8558 -4.5963 1.7006 14 8 1.0247 -6.0054 0.1753 15 6 1.8448 -6.7952 1.0387 16 6 1.9599 -8.2135 0.4763 17 8 2.6528 -8.1756 -0.7728 18 6 2.8155 -9.4560 -1.3862 19 6 3.5543 -9.2981 -2.6902 20 6 4.9347 -9.3678 -2.7153 21 6 5.6123 -9.2236 -3.9115 22 6 4.9096 -9.0091 -5.0825 23 6 3.5296 -8.9334 -5.0565 24 6 2.8516 -9.0840 -3.8612 25 6 1.9335 -3.7312 0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5583 -2.0519 0.8823 28 1 -0.5537 -2.0824 -0.9018 29 1 -0.6307 -4.4184 -0.9812 30 1 -1.2991 -4.2514 0.6755 31 1 1.3959 -6.8336 2.0314 32 1 2.8371 -6.3490 1.1058 33 1 0.9626 -8.6268 0.3263 34 1 2.5107 -8.8392 1.1786 35 1 1.8360 -9.8956 -1.5749 36 1 3.3843 -10.1072 -0.7225 37 1 5.4837 -9.5350 -1.8004 38 1 6.6907 -9.2776 -3.9311 39 1 5.4391 -8.8960 -6.0170 40 1 2.9808 -8.7615 -5.9706 41 1 1.7731 -9.0303 -3.8417 42 1 2.8323 -3.7403 0.6182 43 1 2.1691 -4.0435 -1.0157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210518403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:37 Heat of formation + Delta-G solvation = -57.996074 kcal Electronic energy + Delta-G solvation = -22525.904755 eV Core-core repulsion = 19150.233896 eV Total energy + Delta-G solvation = -3375.670859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30947 -39.89899 -38.63395 -37.32738 -34.26194 -33.05234 -31.79363 -31.33364 -30.37514 -28.70436 -26.79612 -26.30592 -23.50351 -23.48520 -22.22445 -22.04963 -21.82273 -18.98749 -18.13086 -17.95897 -17.58065 -16.84822 -16.66642 -16.45145 -16.13647 -15.69799 -15.52074 -15.32276 -14.90877 -14.44101 -14.27574 -14.01275 -13.92026 -13.63417 -13.49684 -13.24544 -12.94482 -12.87467 -12.73556 -12.26878 -12.23860 -12.07588 -11.91349 -11.87534 -11.81331 -11.74950 -11.43700 -10.72721 -10.57578 -10.43909 -9.82648 -9.75728 -8.94846 -7.87010 -5.24383 0.34208 0.49496 1.45161 1.49502 1.55849 2.45397 2.60528 2.68430 3.16627 3.31139 3.73557 3.82037 3.89723 3.92240 4.02757 4.14613 4.16448 4.22082 4.27714 4.30806 4.36398 4.45363 4.48913 4.56480 4.64342 4.65529 4.72999 4.76811 4.85816 4.95720 5.03726 5.07659 5.08159 5.14935 5.40840 5.54106 5.60232 5.61102 5.66711 5.70802 6.09535 6.14092 6.25713 6.39726 7.06878 7.72481 8.37713 9.23326 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.003099 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.906503 B = 9032.269138 C = 9994.290447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.984 3.016 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.251 4.251 8 H 0.081 0.919 9 N -0.626 5.626 10 C 0.186 3.814 11 C -0.124 4.124 12 C 0.091 3.909 13 H 0.082 0.918 14 O -0.383 6.383 15 C 0.052 3.948 16 C 0.066 3.934 17 O -0.404 6.404 18 C 0.101 3.899 19 C -0.110 4.110 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.124 4.124 23 C -0.135 4.135 24 C -0.117 4.117 25 C 0.116 3.884 26 H 0.249 0.751 27 H 0.022 0.978 28 H 0.009 0.991 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.042 0.958 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 -24.017 -2.414 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.380 4.380 8 H 0.099 0.901 9 N -0.354 5.354 10 C 0.061 3.939 11 C -0.162 4.162 12 C 0.033 3.967 13 H 0.099 0.901 14 O -0.302 6.302 15 C -0.024 4.024 16 C -0.010 4.010 17 O -0.324 6.324 18 C 0.025 3.975 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.135 4.135 25 C -0.010 4.010 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.143 0.857 42 H 0.060 0.940 43 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.640 -23.731 -2.656 24.785 hybrid contribution 0.239 1.137 0.100 1.166 sum 6.878 -22.594 -2.557 23.756 Atomic orbital electron populations 1.70170 1.06329 1.25603 1.57830 1.25716 0.96729 1.01136 1.02146 0.85081 0.77142 0.78356 0.78301 1.20433 1.21656 1.19942 1.19444 0.91024 0.83650 1.43855 0.90136 1.44672 1.02628 1.00837 1.87245 1.20928 0.83651 0.90974 0.98302 1.22796 0.96883 0.94907 1.01609 1.23062 0.95004 0.80948 0.97727 0.90062 1.87927 1.70116 1.21219 1.50949 1.22834 0.94817 0.90956 0.93806 1.22681 0.97229 0.95348 0.85766 1.88058 1.77912 1.29826 1.36624 1.21417 0.99321 0.85405 0.91328 1.19885 0.94504 1.01979 0.94602 1.21332 0.93502 0.99125 0.99092 1.21491 1.01173 0.99919 0.92469 1.21546 0.94400 0.98852 0.99374 1.21465 0.95243 1.00209 0.98415 1.21317 1.00560 0.98822 0.92807 1.22027 0.95907 0.85578 0.97465 0.94155 0.95983 0.97246 0.91426 0.88936 0.89299 0.93358 0.91742 0.88746 0.91665 0.90527 0.84696 0.83813 0.83874 0.84382 0.85713 0.94018 0.96909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 10.31 21.65 0.22 -58.42 16 2 C -0.06 -3.78 5.49 84.86 0.47 -3.31 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.25 -14.83 10.28 84.04 0.86 -13.97 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.63 -34.63 3.39 -692.01 -2.35 -36.97 16 10 C 0.19 9.75 5.38 86.73 0.47 10.22 16 11 C -0.12 -4.97 6.69 31.78 0.21 -4.76 16 12 C 0.09 3.46 3.49 31.98 0.11 3.57 16 13 H 0.08 2.82 7.90 -2.39 -0.02 2.80 16 14 O -0.38 -13.10 10.12 -144.34 -1.46 -14.56 16 15 C 0.05 1.31 6.20 71.98 0.45 1.76 16 16 C 0.07 1.35 6.32 71.98 0.45 1.80 16 17 O -0.40 -10.74 10.29 -144.34 -1.49 -12.23 16 18 C 0.10 2.01 6.06 71.24 0.43 2.44 16 19 C -0.11 -2.46 5.51 -19.86 -0.11 -2.57 16 20 C -0.11 -2.27 9.70 22.27 0.22 -2.05 16 21 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 22 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 23 C -0.14 -2.71 10.05 22.27 0.22 -2.48 16 24 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 25 C 0.12 5.34 6.97 86.85 0.61 5.95 16 26 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.02 1.25 7.38 -2.39 -0.02 1.23 16 28 H 0.01 0.55 7.50 -2.39 -0.02 0.53 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 31 H 0.09 1.74 8.11 -2.38 -0.02 1.72 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 36 H 0.08 1.13 8.09 -2.38 -0.02 1.11 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -73.54 357.39 2.97 -70.58 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.96 Total: 12.76 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 5.05 Total: -10.03 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -2.13 Total: -95.40 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -2.95 Total: -26.79 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -73.54 2.97 -70.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210518403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.579 kcal (2) G-P(sol) polarization free energy of solvation -73.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds