Wall clock time and date at job start Tue Mar 31 2020 07:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48504 * 109.46790 * 264.67138 * 3 2 1 5 5 H 1.48496 * 109.47060 * 24.66874 * 3 2 1 6 6 H 1.48496 * 109.47202 * 144.67427 * 3 2 1 7 7 C 1.37882 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99717 * 357.31830 * 7 2 1 9 9 C 1.50700 * 120.00017 * 177.32002 * 7 2 1 10 10 H 1.09005 * 109.46939 * 356.16784 * 9 7 2 11 11 O 1.42901 * 109.47138 * 236.16963 * 9 7 2 12 12 C 1.42896 * 113.99932 * 90.51041 * 11 9 7 13 13 C 1.52999 * 109.46813 * 175.65357 * 12 11 9 14 14 N 1.46894 * 109.47268 * 293.97538 * 13 12 11 15 15 C 1.46993 * 111.00539 * 301.65000 * 14 13 12 16 16 C 1.53127 * 109.24746 * 181.39195 * 15 14 13 17 17 C 1.53151 * 109.15791 * 301.96786 * 16 15 14 18 18 C 1.53124 * 109.16502 * 57.49024 * 17 16 15 19 19 O 1.43004 * 109.23365 * 302.92720 * 18 17 16 20 20 C 1.50700 * 109.47128 * 116.16622 * 9 7 2 21 21 C 1.38236 * 119.99795 * 80.35136 * 20 9 7 22 22 C 1.38234 * 119.99801 * 179.80781 * 21 20 9 23 23 C 1.38231 * 120.00218 * 0.39932 * 22 21 20 24 24 C 1.38236 * 119.99816 * 359.85703 * 23 22 21 25 25 C 1.38231 * 119.99946 * 260.62380 * 20 9 7 26 26 H 0.97002 * 119.99830 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47163 * 295.65165 * 12 11 9 28 28 H 1.08999 * 109.47270 * 55.65817 * 12 11 9 29 29 H 1.09002 * 109.47398 * 53.98353 * 13 12 11 30 30 H 1.09001 * 109.47365 * 173.97769 * 13 12 11 31 31 H 1.09006 * 109.50594 * 301.32714 * 15 14 13 32 32 H 1.09006 * 109.50602 * 61.45666 * 15 14 13 33 33 H 1.09001 * 109.52301 * 182.06785 * 16 15 14 34 34 H 1.09001 * 109.57546 * 61.90393 * 16 15 14 35 35 H 1.09002 * 109.52400 * 297.57947 * 17 16 15 36 36 H 1.09010 * 109.56823 * 177.42492 * 17 16 15 37 37 H 1.08997 * 109.51275 * 182.99942 * 18 17 16 38 38 H 1.09004 * 109.55304 * 62.87501 * 18 17 16 39 39 H 1.08005 * 119.99727 * 0.02562 * 21 20 9 40 40 H 1.08000 * 119.99629 * 180.23353 * 22 21 20 41 41 H 1.07995 * 120.00261 * 179.83786 * 23 22 21 42 42 H 1.07998 * 119.99929 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00343 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6092 1.9813 -1.3941 5 1 1.3948 2.6825 0.5843 6 1 3.4859 1.4752 0.8095 7 6 2.0045 -1.1941 0.0005 8 1 1.4653 -2.1289 0.0447 9 6 3.5103 -1.1949 -0.0605 10 1 3.8700 -0.1716 -0.1682 11 8 3.9412 -1.9717 -1.1798 12 6 4.0977 -1.2186 -2.3842 13 6 4.6625 -2.1231 -3.4814 14 7 6.0272 -2.5325 -3.1242 15 6 6.8971 -1.3621 -2.9395 16 6 8.3144 -1.8346 -2.6034 17 6 8.2694 -2.7005 -1.3410 18 6 7.3168 -3.8769 -1.5720 19 8 6.0257 -3.3750 -1.9272 20 6 4.0641 -1.7911 1.2079 21 6 4.1109 -3.1639 1.3633 22 6 4.6226 -3.7109 2.5251 23 6 5.0798 -2.8851 3.5349 24 6 5.0281 -1.5122 3.3817 25 6 4.5201 -0.9652 2.2182 26 1 -0.4850 0.8401 -0.0004 27 1 3.1291 -0.8288 -2.6974 28 1 4.7832 -0.3898 -2.2080 29 1 4.0328 -3.0070 -3.5836 30 1 4.6817 -1.5797 -4.4261 31 1 6.9172 -0.7750 -3.8577 32 1 6.5144 -0.7494 -2.1232 33 1 8.9549 -0.9700 -2.4294 34 1 8.7104 -2.4204 -3.4330 35 1 7.9133 -2.1029 -0.5018 36 1 9.2681 -3.0781 -1.1214 37 1 7.2394 -4.4674 -0.6591 38 1 7.6987 -4.5025 -2.3788 39 1 3.7509 -3.8091 0.5755 40 1 4.6627 -4.7835 2.6449 41 1 5.4772 -3.3124 4.4437 42 1 5.3850 -0.8670 4.1708 43 1 4.4798 0.1073 2.0985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224282081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:12 Heat of formation + Delta-G solvation = -17.161777 kcal Electronic energy + Delta-G solvation = -24631.861139 eV Core-core repulsion = 21257.960988 eV Total energy + Delta-G solvation = -3373.900151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.77542 -38.37875 -36.62935 -34.00126 -33.12786 -32.57117 -31.00863 -30.15826 -28.67748 -27.01297 -25.48549 -24.02764 -22.84787 -21.97724 -21.42289 -20.10585 -19.68735 -17.20919 -16.38702 -16.19765 -16.05858 -15.61403 -15.07528 -14.76036 -14.41555 -14.33454 -14.07089 -13.68056 -13.32916 -13.06382 -12.78653 -12.75668 -12.63420 -12.38468 -12.13495 -11.83841 -11.74653 -11.41977 -11.07575 -11.05127 -10.91799 -10.80815 -10.48624 -10.37433 -10.24226 -9.79419 -9.71331 -9.41651 -8.78171 -8.41922 -8.19600 -8.17634 -7.74681 -6.25695 -4.27009 2.11425 2.16899 3.03748 3.10286 3.17496 3.20900 4.21119 4.42771 4.62986 4.80720 4.89290 4.94572 5.11037 5.15737 5.44422 5.50955 5.53533 5.56579 5.61495 5.65820 5.67236 5.72113 5.80834 5.87882 5.93691 5.95870 6.06307 6.15085 6.22046 6.26881 6.33984 6.35081 6.39154 6.56838 6.75353 6.82591 6.92259 7.15521 7.27333 7.41273 7.43437 7.52448 7.76677 8.20932 8.49212 8.88601 9.36344 10.87009 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.007447 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.250303 B = 3759.035073 C = 5044.846681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.212 3.788 10 H 0.026 0.974 11 O -0.369 6.369 12 C 0.038 3.962 13 C 0.047 3.953 14 N -0.351 5.351 15 C 0.009 3.991 16 C -0.114 4.114 17 C -0.155 4.155 18 C 0.059 3.941 19 O -0.214 6.214 20 C -0.029 4.029 21 C -0.090 4.090 22 C -0.128 4.128 23 C -0.147 4.147 24 C -0.126 4.126 25 C -0.131 4.131 26 H 0.267 0.733 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.396 -2.848 -2.986 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.693 3.307 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.100 0.900 9 C 0.156 3.844 10 H 0.044 0.956 11 O -0.288 6.288 12 C -0.041 4.041 13 C -0.081 4.081 14 N -0.118 5.118 15 C -0.119 4.119 16 C -0.152 4.152 17 C -0.193 4.193 18 C -0.020 4.020 19 O -0.219 6.219 20 C -0.029 4.029 21 C -0.108 4.108 22 C -0.146 4.146 23 C -0.165 4.165 24 C -0.144 4.144 25 C -0.149 4.149 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.260 -3.270 -3.237 15.939 hybrid contribution 0.046 1.991 0.741 2.125 sum 15.306 -1.279 -2.496 15.561 Atomic orbital electron populations 1.69884 1.06154 1.27221 1.48876 1.25087 0.94792 0.98707 0.93980 0.87062 0.80428 0.84211 0.79012 1.19872 1.20821 1.18857 1.21328 0.88649 0.95107 1.50484 0.90003 1.19058 0.94130 0.89583 0.81632 0.95592 1.87959 1.88170 1.35789 1.16899 1.22779 0.99309 0.94039 0.87988 1.22552 0.88452 1.00462 0.96598 1.68541 1.10268 1.16533 1.16431 1.22748 0.93951 0.93424 1.01817 1.21540 0.95824 0.99770 0.98067 1.22128 1.00144 0.98545 0.98445 1.22513 0.85266 0.94609 0.99567 1.91190 1.25640 1.63345 1.41702 1.20160 0.92651 0.93689 0.96434 1.20925 0.98112 0.95008 0.96781 1.21046 1.00318 0.98894 0.94372 1.20862 1.03072 0.93706 0.98842 1.20895 1.01215 0.95011 0.97294 1.20960 1.00271 0.99398 0.94300 0.92278 0.92871 0.95193 0.88604 0.88201 0.89675 0.92825 0.91519 0.91280 0.91318 0.91362 0.88982 0.93290 0.85977 0.87157 0.87361 0.87237 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.42 13.96 55.43 0.77 -25.64 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 20.77 27.02 -169.99 -4.59 16.18 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.03 5.65 56.52 0.32 -5.71 16 7 C -0.52 -14.56 9.18 -34.44 -0.32 -14.87 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.21 5.15 2.27 -29.04 -0.07 5.08 16 10 H 0.03 0.64 4.14 -51.93 -0.21 0.42 16 11 O -0.37 -8.38 7.75 -54.77 -0.42 -8.80 16 12 C 0.04 0.73 5.67 37.16 0.21 0.94 16 13 C 0.05 0.74 6.20 -3.83 -0.02 0.72 16 14 N -0.35 -5.44 5.43 -113.64 -0.62 -6.06 16 15 C 0.01 0.13 5.28 -3.71 -0.02 0.11 16 16 C -0.11 -1.31 6.11 -26.59 -0.16 -1.47 16 17 C -0.15 -1.89 6.13 -26.59 -0.16 -2.06 16 18 C 0.06 0.81 7.10 37.22 0.26 1.07 16 19 O -0.21 -3.76 9.57 -33.51 -0.32 -4.08 16 20 C -0.03 -0.65 4.96 -104.63 -0.52 -1.17 16 21 C -0.09 -1.89 9.35 -39.58 -0.37 -2.26 16 22 C -0.13 -2.29 10.05 -39.59 -0.40 -2.69 16 23 C -0.15 -2.47 10.05 -39.58 -0.40 -2.86 16 24 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 25 C -0.13 -2.73 9.67 -39.58 -0.38 -3.12 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.56 5.93 -51.93 -0.31 0.25 16 29 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.84 6.23 -51.93 -0.32 0.52 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.12 2.65 7.77 -52.48 -0.41 2.24 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 2.29 7.01 -52.49 -0.37 1.92 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -31.08 344.17 -9.59 -40.67 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.76 Total: 5.66 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.84 Total: -23.12 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.16 Total: -31.70 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.75 Total: -12.88 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.59 Total: 16.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.08 -9.59 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224282081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.509 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds