Wall clock time and date at job start Tue Mar 31 2020 07:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48504 * 109.46790 * 264.67138 * 3 2 1 5 5 H 1.48496 * 109.47060 * 24.66874 * 3 2 1 6 6 H 1.48496 * 109.47202 * 144.67427 * 3 2 1 7 7 C 1.37882 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99717 * 357.31830 * 7 2 1 9 9 C 1.50700 * 120.00017 * 177.32002 * 7 2 1 10 10 H 1.09005 * 109.46939 * 356.16784 * 9 7 2 11 11 O 1.42901 * 109.47138 * 236.16963 * 9 7 2 12 12 C 1.42896 * 113.99932 * 90.51041 * 11 9 7 13 13 C 1.52999 * 109.46813 * 175.65357 * 12 11 9 14 14 N 1.46894 * 109.47268 * 293.97538 * 13 12 11 15 15 C 1.46993 * 111.00539 * 301.65000 * 14 13 12 16 16 C 1.53127 * 109.24746 * 181.39195 * 15 14 13 17 17 C 1.53151 * 109.15791 * 301.96786 * 16 15 14 18 18 C 1.53124 * 109.16502 * 57.49024 * 17 16 15 19 19 O 1.43004 * 109.23365 * 302.92720 * 18 17 16 20 20 C 1.50700 * 109.47128 * 116.16622 * 9 7 2 21 21 C 1.38236 * 119.99795 * 80.35136 * 20 9 7 22 22 C 1.38234 * 119.99801 * 179.80781 * 21 20 9 23 23 C 1.38231 * 120.00218 * 0.39932 * 22 21 20 24 24 C 1.38236 * 119.99816 * 359.85703 * 23 22 21 25 25 C 1.38231 * 119.99946 * 260.62380 * 20 9 7 26 26 H 0.97002 * 119.99830 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47163 * 295.65165 * 12 11 9 28 28 H 1.08999 * 109.47270 * 55.65817 * 12 11 9 29 29 H 1.09002 * 109.47398 * 53.98353 * 13 12 11 30 30 H 1.09001 * 109.47365 * 173.97769 * 13 12 11 31 31 H 1.09006 * 109.50594 * 301.32714 * 15 14 13 32 32 H 1.09006 * 109.50602 * 61.45666 * 15 14 13 33 33 H 1.09001 * 109.52301 * 182.06785 * 16 15 14 34 34 H 1.09001 * 109.57546 * 61.90393 * 16 15 14 35 35 H 1.09002 * 109.52400 * 297.57947 * 17 16 15 36 36 H 1.09010 * 109.56823 * 177.42492 * 17 16 15 37 37 H 1.08997 * 109.51275 * 182.99942 * 18 17 16 38 38 H 1.09004 * 109.55304 * 62.87501 * 18 17 16 39 39 H 1.08005 * 119.99727 * 0.02562 * 21 20 9 40 40 H 1.08000 * 119.99629 * 180.23353 * 22 21 20 41 41 H 1.07995 * 120.00261 * 179.83786 * 23 22 21 42 42 H 1.07998 * 119.99929 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00343 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6092 1.9813 -1.3941 5 1 1.3948 2.6825 0.5843 6 1 3.4859 1.4752 0.8095 7 6 2.0045 -1.1941 0.0005 8 1 1.4653 -2.1289 0.0447 9 6 3.5103 -1.1949 -0.0605 10 1 3.8700 -0.1716 -0.1682 11 8 3.9412 -1.9717 -1.1798 12 6 4.0977 -1.2186 -2.3842 13 6 4.6625 -2.1231 -3.4814 14 7 6.0272 -2.5325 -3.1242 15 6 6.8971 -1.3621 -2.9395 16 6 8.3144 -1.8346 -2.6034 17 6 8.2694 -2.7005 -1.3410 18 6 7.3168 -3.8769 -1.5720 19 8 6.0257 -3.3750 -1.9272 20 6 4.0641 -1.7911 1.2079 21 6 4.1109 -3.1639 1.3633 22 6 4.6226 -3.7109 2.5251 23 6 5.0798 -2.8851 3.5349 24 6 5.0281 -1.5122 3.3817 25 6 4.5201 -0.9652 2.2182 26 1 -0.4850 0.8401 -0.0004 27 1 3.1291 -0.8288 -2.6974 28 1 4.7832 -0.3898 -2.2080 29 1 4.0328 -3.0070 -3.5836 30 1 4.6817 -1.5797 -4.4261 31 1 6.9172 -0.7750 -3.8577 32 1 6.5144 -0.7494 -2.1232 33 1 8.9549 -0.9700 -2.4294 34 1 8.7104 -2.4204 -3.4330 35 1 7.9133 -2.1029 -0.5018 36 1 9.2681 -3.0781 -1.1214 37 1 7.2394 -4.4674 -0.6591 38 1 7.6987 -4.5025 -2.3788 39 1 3.7509 -3.8091 0.5755 40 1 4.6627 -4.7835 2.6449 41 1 5.4772 -3.3124 4.4437 42 1 5.3850 -0.8670 4.1708 43 1 4.4798 0.1073 2.0985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224282081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:11 Heat of formation + Delta-G solvation = -35.914959 kcal Electronic energy + Delta-G solvation = -24632.674338 eV Core-core repulsion = 21257.960988 eV Total energy + Delta-G solvation = -3374.713350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29112 -39.62515 -38.21999 -35.44253 -34.57200 -34.16263 -32.63857 -31.65487 -29.96747 -28.90554 -26.78036 -25.10443 -24.65222 -23.44250 -22.74870 -21.77218 -20.77625 -19.31600 -17.83561 -17.60589 -17.34946 -17.18310 -16.51875 -16.14606 -16.01372 -15.65032 -15.25581 -15.16576 -14.85233 -14.74282 -14.36838 -14.20210 -14.04615 -13.61226 -13.51179 -13.29125 -13.18123 -13.01352 -12.91666 -12.42683 -12.27178 -11.99749 -11.86444 -11.83296 -11.72665 -11.47421 -11.27407 -10.88464 -10.81940 -10.16984 -9.69702 -9.48036 -9.34497 -8.44053 -6.51643 0.59860 0.65988 1.18371 1.21304 1.30867 1.84795 2.17389 2.76314 3.10164 3.14756 3.69369 3.90896 3.94374 4.06708 4.10622 4.12669 4.17549 4.23959 4.30613 4.37026 4.48464 4.52313 4.55771 4.58698 4.69706 4.71401 4.85152 4.86957 4.93562 4.95462 5.02214 5.04132 5.20180 5.21881 5.30271 5.34533 5.37239 5.67799 5.70446 5.73842 5.91896 6.07378 6.26003 6.27189 6.51480 6.72181 7.18159 8.73048 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.007447 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.250303 B = 3759.035073 C = 5044.846681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.025 3.975 3 Si 0.928 3.072 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.246 1.246 7 C -0.527 4.527 8 H 0.028 0.972 9 C 0.222 3.778 10 H 0.025 0.975 11 O -0.379 6.379 12 C 0.031 3.969 13 C 0.054 3.946 14 N -0.345 5.345 15 C 0.005 3.995 16 C -0.110 4.110 17 C -0.150 4.150 18 C 0.052 3.948 19 O -0.255 6.255 20 C -0.063 4.063 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.150 4.150 26 H 0.271 0.729 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.913 -2.173 -2.209 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.175 4.175 3 Si 0.751 3.249 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.564 4.564 8 H 0.046 0.954 9 C 0.165 3.835 10 H 0.043 0.957 11 O -0.298 6.298 12 C -0.048 4.048 13 C -0.074 4.074 14 N -0.113 5.113 15 C -0.123 4.123 16 C -0.148 4.148 17 C -0.188 4.188 18 C -0.025 4.025 19 O -0.260 6.260 20 C -0.064 4.064 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.168 4.168 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.130 0.870 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.803 -2.619 -2.458 19.143 hybrid contribution -1.023 1.627 0.516 1.991 sum 17.780 -0.991 -1.942 17.913 Atomic orbital electron populations 1.70035 1.08073 1.28454 1.50768 1.25923 0.95565 1.02633 0.93336 0.86057 0.79664 0.79056 0.80167 1.18206 1.20082 1.16985 1.21434 0.91067 0.93200 1.50745 0.95409 1.18827 0.91524 0.89935 0.83176 0.95726 1.87948 1.87831 1.36337 1.17672 1.23037 0.98694 0.95202 0.87837 1.22636 0.88586 0.99491 0.96706 1.68530 1.09829 1.17128 1.15763 1.22924 0.94661 0.92572 1.02169 1.21567 0.94656 1.00568 0.97981 1.22095 1.00891 0.97758 0.98098 1.22690 0.84416 0.95440 0.99996 1.91158 1.28102 1.64169 1.42573 1.20156 0.95148 0.94759 0.96306 1.20861 0.99719 0.94355 0.97938 1.21383 0.98825 1.00800 0.93201 1.21371 1.00939 0.93192 0.99626 1.21322 0.99533 0.96195 0.96748 1.21099 1.01337 0.99182 0.95206 0.92009 0.94962 0.94225 0.89979 0.84282 0.87049 0.95379 0.89522 0.89840 0.93700 0.88682 0.89001 0.92013 0.88376 0.84162 0.82884 0.83552 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.55 13.96 21.45 0.30 -58.25 16 2 C 0.02 1.45 5.47 84.66 0.46 1.91 16 3 Si 0.93 43.51 27.02 68.60 1.85 45.36 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.25 -10.74 5.65 99.48 0.56 -10.17 16 7 C -0.53 -31.53 9.18 25.60 0.23 -31.29 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 9 C 0.22 11.24 2.27 29.10 0.07 11.31 16 10 H 0.03 1.24 4.14 -2.38 -0.01 1.23 16 11 O -0.38 -18.11 7.75 -130.30 -1.01 -19.12 16 12 C 0.03 1.23 5.67 71.98 0.41 1.63 16 13 C 0.05 1.69 6.20 86.30 0.53 2.22 16 14 N -0.35 -10.42 5.43 -513.43 -2.79 -13.21 16 15 C 0.01 0.13 5.28 86.33 0.46 0.58 16 16 C -0.11 -2.22 6.11 30.69 0.19 -2.03 16 17 C -0.15 -3.41 6.13 30.69 0.19 -3.22 16 18 C 0.05 1.40 7.10 72.02 0.51 1.91 16 19 O -0.26 -9.09 9.57 -31.68 -0.30 -9.39 16 20 C -0.06 -2.94 4.96 -19.87 -0.10 -3.04 16 21 C -0.11 -4.77 9.35 22.27 0.21 -4.56 16 22 C -0.12 -4.22 10.05 22.27 0.22 -4.00 16 23 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 24 C -0.12 -3.91 10.05 22.27 0.22 -3.69 16 25 C -0.15 -6.14 9.67 22.27 0.22 -5.93 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.50 5.93 -2.39 -0.01 1.48 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.03 0.86 6.23 -2.38 -0.01 0.84 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 4.58 7.77 -2.91 -0.02 4.56 16 40 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 41 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.11 4.36 7.01 -2.91 -0.02 4.34 16 Total: -1.00 -73.21 344.17 2.94 -70.28 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.84 Total: 26.28 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 4.05 Total: -41.94 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -2.49 Total: -71.46 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.31 Total: -28.52 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.85 Total: 45.36 kcal Total: -73.21 2.94 -70.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224282081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.362 kcal (2) G-P(sol) polarization free energy of solvation -73.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds