Wall clock time and date at job start Tue Mar 31 2020 07:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00218 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99827 * 3 2 1 5 5 H 1.48504 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47109 * 119.99685 * 3 2 1 7 7 C 1.37874 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 189.93192 * 7 2 1 9 9 C 1.50699 * 120.00049 * 9.92845 * 7 2 1 10 10 H 1.09005 * 109.47301 * 185.61549 * 9 7 2 11 11 O 1.42893 * 109.47218 * 305.61361 * 9 7 2 12 12 C 1.42901 * 114.00434 * 270.00108 * 11 9 7 13 13 C 1.53002 * 109.47531 * 180.02562 * 12 11 9 14 14 N 1.46894 * 109.47300 * 60.81967 * 13 12 11 15 15 C 1.46993 * 110.99925 * 167.58989 * 14 13 12 16 16 C 1.53136 * 109.24401 * 181.39950 * 15 14 13 17 17 C 1.53146 * 109.15670 * 301.96485 * 16 15 14 18 18 C 1.53130 * 109.16259 * 57.49066 * 17 16 15 19 19 O 1.43000 * 109.23430 * 302.92112 * 18 17 16 20 20 C 1.50696 * 109.47179 * 65.61774 * 9 7 2 21 21 C 1.38235 * 119.99506 * 270.89794 * 20 9 7 22 22 C 1.38240 * 119.99914 * 179.97438 * 21 20 9 23 23 C 1.38234 * 119.99887 * 359.96139 * 22 21 20 24 24 C 1.38241 * 119.99856 * 359.97438 * 23 22 21 25 25 C 1.38228 * 119.99951 * 0.06693 * 24 23 22 26 26 H 0.97000 * 119.99501 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00010 * 12 11 9 28 28 H 1.08996 * 109.47317 * 59.99937 * 12 11 9 29 29 H 1.09001 * 109.47291 * 180.82572 * 13 12 11 30 30 H 1.09006 * 109.46543 * 300.82333 * 13 12 11 31 31 H 1.09005 * 109.50868 * 301.32473 * 15 14 13 32 32 H 1.08995 * 109.51022 * 61.46583 * 15 14 13 33 33 H 1.08996 * 109.52004 * 182.06279 * 16 15 14 34 34 H 1.09000 * 109.57519 * 61.90119 * 16 15 14 35 35 H 1.09002 * 109.52579 * 297.58369 * 17 16 15 36 36 H 1.08996 * 109.57316 * 177.42502 * 17 16 15 37 37 H 1.09001 * 109.50915 * 183.00231 * 18 17 16 38 38 H 1.08996 * 109.55365 * 62.87698 * 18 17 16 39 39 H 1.08001 * 120.00343 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00039 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00435 * 179.71847 * 23 22 21 42 42 H 1.07995 * 119.99584 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99735 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0724 -1.2010 0.1619 9 6 1.2679 -2.4894 -0.2239 10 1 1.9544 -3.3256 -0.0906 11 8 0.1973 -2.5977 0.7162 12 6 0.5604 -3.2414 1.9392 13 6 -0.6565 -3.3020 2.8647 14 7 -1.7239 -4.0784 2.2199 15 6 -2.7875 -4.4093 3.1790 16 6 -3.8595 -5.2462 2.4750 17 6 -4.4096 -4.4582 1.2826 18 6 -3.2561 -4.1014 0.3407 19 8 -2.2681 -3.3632 1.0644 20 6 0.7115 -2.5148 -1.6241 21 6 -0.5474 -2.0026 -1.8769 22 6 -1.0577 -2.0254 -3.1615 23 6 -0.3088 -2.5596 -4.1933 24 6 0.9506 -3.0706 -3.9407 25 6 1.4605 -3.0486 -2.6561 26 1 -0.4849 0.8401 -0.0004 27 1 0.9067 -4.2532 1.7284 28 1 1.3579 -2.6780 2.4236 29 1 -0.3758 -3.7799 3.8032 30 1 -1.0121 -2.2910 3.0638 31 1 -2.3664 -4.9794 4.0072 32 1 -3.2342 -3.4904 3.5586 33 1 -4.6684 -5.4632 3.1725 34 1 -3.4212 -6.1802 2.1234 35 1 -4.8854 -3.5442 1.6382 36 1 -5.1406 -5.0658 0.7493 37 1 -3.6329 -3.4948 -0.4828 38 1 -2.8115 -5.0150 -0.0539 39 1 -1.1322 -1.5847 -1.0709 40 1 -2.0413 -1.6256 -3.3589 41 1 -0.7092 -2.5816 -5.1961 42 1 1.5355 -3.4883 -4.7468 43 1 2.4442 -3.4481 -2.4587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224282082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:16 Heat of formation + Delta-G solvation = -10.643369 kcal Electronic energy + Delta-G solvation = -24593.291817 eV Core-core repulsion = 21219.674325 eV Total energy + Delta-G solvation = -3373.617492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.28925 -38.04830 -36.14811 -33.68366 -32.98283 -32.27798 -30.45283 -29.65911 -28.61989 -26.47884 -25.28838 -23.53765 -22.76140 -21.47695 -20.79301 -19.97999 -19.86638 -16.62642 -16.12720 -16.04610 -15.63420 -15.01706 -14.71521 -14.44905 -14.31126 -13.93087 -13.72237 -13.50409 -13.25119 -12.83363 -12.75012 -12.32030 -12.20342 -12.08509 -11.59961 -11.52125 -11.39751 -10.93455 -10.90364 -10.86697 -10.66289 -10.47368 -10.34708 -10.07204 -9.92818 -9.67256 -9.46119 -9.02114 -8.54411 -7.99526 -7.86870 -7.66489 -7.32374 -5.89096 -4.07839 2.52762 2.64764 3.23173 3.33039 3.37908 3.41706 4.45178 4.79571 4.95910 4.99625 5.00938 5.14234 5.21785 5.39407 5.55773 5.65819 5.66137 5.84620 5.89716 5.90987 5.96152 6.01712 6.05611 6.06995 6.11128 6.30975 6.33945 6.38589 6.46293 6.58714 6.63690 6.72490 6.89280 7.04679 7.17267 7.20364 7.33807 7.57286 7.66985 7.76784 7.93525 8.09660 8.24236 8.33291 8.73543 9.20692 9.63879 11.06762 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.006547 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.117734 B = 4275.787216 C = 5417.979604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.089 3.911 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.556 4.556 8 H 0.056 0.944 9 C 0.244 3.756 10 H 0.011 0.989 11 O -0.332 6.332 12 C 0.081 3.919 13 C 0.054 3.946 14 N -0.355 5.355 15 C 0.015 3.985 16 C -0.115 4.115 17 C -0.156 4.156 18 C 0.058 3.942 19 O -0.198 6.198 20 C -0.028 4.028 21 C -0.059 4.059 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.133 4.133 26 H 0.257 0.743 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.155 0.845 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 -8.689 2.952 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.119 4.119 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.188 3.812 10 H 0.029 0.971 11 O -0.250 6.250 12 C 0.003 3.997 13 C -0.074 4.074 14 N -0.122 5.122 15 C -0.114 4.114 16 C -0.153 4.153 17 C -0.194 4.194 18 C -0.020 4.020 19 O -0.204 6.204 20 C -0.028 4.028 21 C -0.078 4.078 22 C -0.166 4.166 23 C -0.170 4.170 24 C -0.161 4.161 25 C -0.151 4.151 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.173 0.827 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.755 -8.723 2.681 11.354 hybrid contribution 0.334 1.602 0.302 1.664 sum -6.421 -7.121 2.983 10.042 Atomic orbital electron populations 1.70041 1.05533 1.25806 1.45042 1.24911 0.94611 0.98497 0.93835 0.86899 0.80033 0.83857 0.78586 1.20266 1.21283 1.20375 1.21324 0.94037 0.91468 1.52478 0.92615 1.18469 0.84982 0.94116 0.83668 0.97101 1.88199 1.35121 1.78121 1.23519 1.21964 0.93880 0.95010 0.88877 1.22334 0.91704 0.97615 0.95756 1.68372 1.05790 1.35222 1.02827 1.22704 0.94222 0.99103 0.95403 1.21542 0.97398 0.98987 0.97340 1.22181 0.98988 1.00475 0.97725 1.22503 0.88105 0.97822 0.93619 1.91283 1.57208 1.36381 1.35489 1.20190 0.93247 0.93227 0.96180 1.21575 0.95782 0.94176 0.96218 1.21137 0.99329 1.01940 0.94205 1.20784 0.95659 1.02658 0.97914 1.20734 0.96256 1.02910 0.96198 1.20808 0.99360 1.01954 0.92959 0.93247 0.95612 0.94044 0.89414 0.92649 0.89880 0.94125 0.91734 0.91133 0.91800 0.91402 0.88985 0.93048 0.82736 0.88107 0.88287 0.88018 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.84 9.48 55.43 0.53 -22.32 16 2 C 0.09 2.42 5.21 -17.82 -0.09 2.33 16 3 Si 0.88 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.56 -15.12 8.84 -34.44 -0.30 -15.43 16 8 H 0.06 1.51 7.83 -52.48 -0.41 1.10 16 9 C 0.24 6.18 2.57 -29.04 -0.07 6.10 16 10 H 0.01 0.27 7.72 -51.93 -0.40 -0.13 16 11 O -0.33 -8.12 6.20 -55.19 -0.34 -8.47 16 12 C 0.08 1.68 6.11 37.16 0.23 1.90 16 13 C 0.05 0.94 5.81 -3.83 -0.02 0.92 16 14 N -0.35 -6.13 5.21 -113.63 -0.59 -6.72 16 15 C 0.01 0.20 5.72 -3.70 -0.02 0.17 16 16 C -0.11 -1.35 6.11 -26.59 -0.16 -1.51 16 17 C -0.16 -1.96 6.13 -26.59 -0.16 -2.12 16 18 C 0.06 0.93 7.10 37.22 0.26 1.19 16 19 O -0.20 -3.95 9.54 -33.92 -0.32 -4.28 16 20 C -0.03 -0.68 4.84 -104.63 -0.51 -1.19 16 21 C -0.06 -1.43 8.14 -39.58 -0.32 -1.75 16 22 C -0.15 -3.13 10.05 -39.58 -0.40 -3.52 16 23 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 24 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 25 C -0.13 -2.92 9.70 -39.59 -0.38 -3.30 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.22 8.01 -51.93 -0.42 0.80 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.16 4.08 5.89 -52.49 -0.31 3.77 16 40 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -29.63 347.17 -10.29 -39.92 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.01 Total: 3.25 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -2.75 Total: -22.78 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: -0.07 Total: -29.04 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.67 Total: -12.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.63 -10.29 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224282082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.278 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds