Wall clock time and date at job start Tue Mar 31 2020 07:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00218 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99827 * 3 2 1 5 5 H 1.48504 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47109 * 119.99685 * 3 2 1 7 7 C 1.37874 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 189.93192 * 7 2 1 9 9 C 1.50699 * 120.00049 * 9.92845 * 7 2 1 10 10 H 1.09005 * 109.47301 * 185.61549 * 9 7 2 11 11 O 1.42893 * 109.47218 * 305.61361 * 9 7 2 12 12 C 1.42901 * 114.00434 * 270.00108 * 11 9 7 13 13 C 1.53002 * 109.47531 * 180.02562 * 12 11 9 14 14 N 1.46894 * 109.47300 * 60.81967 * 13 12 11 15 15 C 1.46993 * 110.99925 * 167.58989 * 14 13 12 16 16 C 1.53136 * 109.24401 * 181.39950 * 15 14 13 17 17 C 1.53146 * 109.15670 * 301.96485 * 16 15 14 18 18 C 1.53130 * 109.16259 * 57.49066 * 17 16 15 19 19 O 1.43000 * 109.23430 * 302.92112 * 18 17 16 20 20 C 1.50696 * 109.47179 * 65.61774 * 9 7 2 21 21 C 1.38235 * 119.99506 * 270.89794 * 20 9 7 22 22 C 1.38240 * 119.99914 * 179.97438 * 21 20 9 23 23 C 1.38234 * 119.99887 * 359.96139 * 22 21 20 24 24 C 1.38241 * 119.99856 * 359.97438 * 23 22 21 25 25 C 1.38228 * 119.99951 * 0.06693 * 24 23 22 26 26 H 0.97000 * 119.99501 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00010 * 12 11 9 28 28 H 1.08996 * 109.47317 * 59.99937 * 12 11 9 29 29 H 1.09001 * 109.47291 * 180.82572 * 13 12 11 30 30 H 1.09006 * 109.46543 * 300.82333 * 13 12 11 31 31 H 1.09005 * 109.50868 * 301.32473 * 15 14 13 32 32 H 1.08995 * 109.51022 * 61.46583 * 15 14 13 33 33 H 1.08996 * 109.52004 * 182.06279 * 16 15 14 34 34 H 1.09000 * 109.57519 * 61.90119 * 16 15 14 35 35 H 1.09002 * 109.52579 * 297.58369 * 17 16 15 36 36 H 1.08996 * 109.57316 * 177.42502 * 17 16 15 37 37 H 1.09001 * 109.50915 * 183.00231 * 18 17 16 38 38 H 1.08996 * 109.55365 * 62.87698 * 18 17 16 39 39 H 1.08001 * 120.00343 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00039 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00435 * 179.71847 * 23 22 21 42 42 H 1.07995 * 119.99584 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99735 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0724 -1.2010 0.1619 9 6 1.2679 -2.4894 -0.2239 10 1 1.9544 -3.3256 -0.0906 11 8 0.1973 -2.5977 0.7162 12 6 0.5604 -3.2414 1.9392 13 6 -0.6565 -3.3020 2.8647 14 7 -1.7239 -4.0784 2.2199 15 6 -2.7875 -4.4093 3.1790 16 6 -3.8595 -5.2462 2.4750 17 6 -4.4096 -4.4582 1.2826 18 6 -3.2561 -4.1014 0.3407 19 8 -2.2681 -3.3632 1.0644 20 6 0.7115 -2.5148 -1.6241 21 6 -0.5474 -2.0026 -1.8769 22 6 -1.0577 -2.0254 -3.1615 23 6 -0.3088 -2.5596 -4.1933 24 6 0.9506 -3.0706 -3.9407 25 6 1.4605 -3.0486 -2.6561 26 1 -0.4849 0.8401 -0.0004 27 1 0.9067 -4.2532 1.7284 28 1 1.3579 -2.6780 2.4236 29 1 -0.3758 -3.7799 3.8032 30 1 -1.0121 -2.2910 3.0638 31 1 -2.3664 -4.9794 4.0072 32 1 -3.2342 -3.4904 3.5586 33 1 -4.6684 -5.4632 3.1725 34 1 -3.4212 -6.1802 2.1234 35 1 -4.8854 -3.5442 1.6382 36 1 -5.1406 -5.0658 0.7493 37 1 -3.6329 -3.4948 -0.4828 38 1 -2.8115 -5.0150 -0.0539 39 1 -1.1322 -1.5847 -1.0709 40 1 -2.0413 -1.6256 -3.3589 41 1 -0.7092 -2.5816 -5.1961 42 1 1.5355 -3.4883 -4.7468 43 1 2.4442 -3.4481 -2.4587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224282082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:15 Heat of formation + Delta-G solvation = -26.167687 kcal Electronic energy + Delta-G solvation = -24593.965002 eV Core-core repulsion = 21219.674325 eV Total energy + Delta-G solvation = -3374.290677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91319 -39.38101 -37.87305 -35.20820 -34.29691 -33.97736 -32.18993 -31.32918 -30.04932 -28.39273 -26.63018 -24.74559 -24.59683 -23.11231 -22.33240 -21.74086 -20.94856 -18.59160 -17.55975 -17.45757 -17.16084 -16.77496 -16.32516 -15.93431 -15.75841 -15.48877 -15.12823 -14.95639 -14.87151 -14.35713 -14.23664 -13.84515 -13.69824 -13.42389 -13.31660 -13.18696 -12.88101 -12.76859 -12.51853 -12.46394 -12.05467 -11.93695 -11.78199 -11.65345 -11.44482 -11.39809 -10.90651 -10.71297 -10.58383 -9.66037 -9.40496 -9.33650 -9.10169 -7.93016 -6.19253 0.83408 0.97924 1.38805 1.41383 1.46849 1.91201 2.43966 3.17342 3.36395 3.55329 3.66260 3.96913 3.99766 4.09173 4.33304 4.37648 4.40522 4.45554 4.51642 4.53604 4.60452 4.69248 4.73161 4.74785 4.87404 4.92081 4.94903 5.02733 5.03856 5.09033 5.20017 5.24649 5.28950 5.36642 5.48831 5.66062 5.72007 5.84836 5.89561 6.09909 6.20896 6.35669 6.39086 6.55804 6.70875 7.30127 7.58079 8.99284 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.006547 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.117734 B = 4275.787216 C = 5417.979604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.051 3.949 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.576 4.576 8 H 0.046 0.954 9 C 0.242 3.758 10 H 0.004 0.996 11 O -0.345 6.345 12 C 0.073 3.927 13 C 0.062 3.938 14 N -0.359 5.359 15 C 0.011 3.989 16 C -0.111 4.111 17 C -0.148 4.148 18 C 0.053 3.947 19 O -0.245 6.245 20 C -0.057 4.057 21 C -0.078 4.078 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.147 4.147 26 H 0.254 0.746 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.131 0.869 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.034 0.966 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -9.760 2.248 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.155 4.155 3 Si 0.759 3.241 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.064 0.936 9 C 0.186 3.814 10 H 0.021 0.979 11 O -0.263 6.263 12 C -0.005 4.005 13 C -0.066 4.066 14 N -0.128 5.128 15 C -0.117 4.117 16 C -0.148 4.148 17 C -0.186 4.186 18 C -0.025 4.025 19 O -0.249 6.249 20 C -0.058 4.058 21 C -0.096 4.096 22 C -0.172 4.172 23 C -0.161 4.161 24 C -0.154 4.154 25 C -0.165 4.165 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.148 0.852 30 H 0.048 0.952 31 H 0.130 0.870 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.497 -9.801 1.973 12.496 hybrid contribution 0.557 1.846 0.506 1.994 sum -6.939 -7.955 2.479 10.843 Atomic orbital electron populations 1.70211 1.06338 1.25875 1.45446 1.25476 0.95336 1.00938 0.93743 0.86047 0.78926 0.80672 0.78466 1.20366 1.20952 1.19873 1.21535 0.93736 0.92910 1.53172 0.93604 1.18432 0.85161 0.92972 0.84885 0.97852 1.88193 1.34898 1.78674 1.24530 1.22172 0.95380 0.94739 0.88218 1.22322 0.90793 0.97019 0.96436 1.68287 1.07126 1.34271 1.03108 1.22901 0.93890 0.99475 0.95447 1.21573 0.97654 0.98293 0.97326 1.22119 0.97961 1.00862 0.97663 1.22600 0.88727 0.96979 0.94186 1.91238 1.58438 1.38248 1.37013 1.20257 0.94143 0.95163 0.96223 1.21321 0.95819 0.95608 0.96866 1.21379 1.00441 1.01865 0.93493 1.21222 0.95151 1.00570 0.99170 1.21169 0.96593 1.01605 0.96063 1.21044 0.99711 1.02101 0.93637 0.93707 0.94949 0.95258 0.85167 0.95219 0.87050 0.94757 0.88685 0.90903 0.92331 0.88912 0.89639 0.93793 0.85863 0.86189 0.84212 0.84164 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.22 9.48 21.45 0.20 -48.02 16 2 C 0.05 2.85 5.21 84.65 0.44 3.29 16 3 Si 0.93 44.35 29.55 68.60 2.03 46.38 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.58 -32.52 8.84 25.60 0.23 -32.30 16 8 H 0.05 2.58 7.83 -2.91 -0.02 2.56 16 9 C 0.24 12.82 2.57 29.10 0.07 12.89 16 10 H 0.00 0.19 7.72 -2.38 -0.02 0.17 16 11 O -0.34 -17.76 6.20 -129.90 -0.81 -18.56 16 12 C 0.07 3.14 6.11 71.98 0.44 3.58 16 13 C 0.06 2.22 5.81 86.30 0.50 2.72 16 14 N -0.36 -12.41 5.21 -513.42 -2.67 -15.09 16 15 C 0.01 0.28 5.72 86.33 0.49 0.77 16 16 C -0.11 -2.34 6.11 30.69 0.19 -2.15 16 17 C -0.15 -3.54 6.13 30.69 0.19 -3.35 16 18 C 0.05 1.73 7.10 72.03 0.51 2.24 16 19 O -0.24 -10.15 9.54 -31.29 -0.30 -10.45 16 20 C -0.06 -2.88 4.84 -19.87 -0.10 -2.97 16 21 C -0.08 -3.85 8.14 22.27 0.18 -3.66 16 22 C -0.15 -6.37 10.05 22.27 0.22 -6.15 16 23 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 24 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 25 C -0.15 -6.40 9.70 22.27 0.22 -6.19 16 26 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.13 3.42 8.01 -2.39 -0.02 3.40 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.11 2.18 8.09 -2.38 -0.02 2.16 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.12 6.88 5.89 -2.91 -0.02 6.86 16 40 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -66.92 347.17 3.46 -63.46 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.97 Total: 23.29 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 4.04 Total: -41.02 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -2.47 Total: -63.10 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.10 Total: -29.01 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -66.92 3.46 -63.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224282082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.296 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds