Wall clock time and date at job start Tue Mar 31 2020 07:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47117 * 270.00289 * 3 2 1 5 5 H 1.48507 * 109.46909 * 29.99521 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.99758 * 3 2 1 7 7 C 1.38637 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 179.97438 * 7 2 1 9 9 O 1.34934 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.42901 * 116.99894 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46672 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.52850 * 305.13102 * 11 10 9 13 13 C 1.54284 * 109.52408 * 184.99831 * 11 10 9 14 14 N 1.40439 * 111.68210 * 162.88573 * 13 11 10 15 15 C 1.46899 * 111.00209 * 188.30557 * 14 13 11 16 16 C 1.50693 * 109.47451 * 170.00015 * 15 14 13 17 17 C 1.38237 * 120.00117 * 269.73094 * 16 15 14 18 18 C 1.38234 * 120.00035 * 179.81063 * 17 16 15 19 19 C 1.38238 * 120.00100 * 0.41219 * 18 17 16 20 20 C 1.38234 * 119.99691 * 359.81538 * 19 18 17 21 21 C 1.38234 * 120.00181 * 0.02562 * 20 19 18 22 22 C 1.47629 * 114.32009 * 61.80894 * 14 13 11 23 23 C 1.50893 * 108.76681 * 279.98465 * 22 14 13 24 24 C 1.53619 * 111.71211 * 91.01635 * 23 22 14 25 25 O 1.40621 * 109.52914 * 65.34656 * 11 10 9 26 26 H 0.96996 * 119.99866 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46889 * 300.00132 * 10 9 7 28 28 H 1.08999 * 109.47144 * 60.00014 * 10 9 7 29 29 H 1.08994 * 109.04044 * 283.45732 * 13 11 10 30 30 H 1.09010 * 109.03572 * 42.31924 * 13 11 10 31 31 H 1.08998 * 109.47169 * 290.00154 * 15 14 13 32 32 H 1.09002 * 109.46924 * 50.00071 * 15 14 13 33 33 H 1.08004 * 119.99877 * 359.97438 * 17 16 15 34 34 H 1.08000 * 120.00227 * 180.20417 * 18 17 16 35 35 H 1.07998 * 120.00142 * 179.79311 * 19 18 17 36 36 H 1.08001 * 120.00062 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.00160 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.58732 * 39.77207 * 22 14 13 39 39 H 1.09005 * 109.58901 * 160.20241 * 22 14 13 40 40 H 1.08997 * 109.03434 * 211.58700 * 23 22 14 41 41 H 1.08999 * 109.03398 * 330.44691 * 23 22 14 42 42 H 1.08999 * 108.87085 * 79.43171 * 24 23 22 43 43 H 1.09005 * 108.87129 * 197.95215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0091 -1.2006 0.0005 8 1 3.0891 -1.2006 0.0001 9 8 1.3344 -2.3692 0.0005 10 6 2.1128 -3.5676 0.0005 11 6 1.1807 -4.7809 -0.0001 12 1 0.4896 -4.7100 0.8398 13 6 2.0153 -6.0723 0.1266 14 7 1.2239 -7.1656 0.5149 15 6 2.0569 -8.3360 0.8215 16 6 1.2080 -9.4025 1.4640 17 6 1.0668 -9.4387 2.8386 18 6 0.2848 -10.4146 3.4277 19 6 -0.3491 -11.3596 2.6427 20 6 -0.2041 -11.3262 1.2684 21 6 0.5752 -10.3483 0.6791 22 6 0.1552 -7.5130 -0.4425 23 6 -1.0041 -6.5686 -0.2397 24 6 -0.8894 -5.3271 -1.1371 25 8 0.4564 -4.8166 -1.2049 26 1 -0.4850 0.8400 -0.0004 27 1 2.7416 -3.5924 -0.8895 28 1 2.7416 -3.5925 0.8905 29 1 2.4782 -6.2923 -0.8353 30 1 2.7981 -5.9183 0.8694 31 1 2.4919 -8.7238 -0.0996 32 1 2.8543 -8.0453 1.5056 33 1 1.5653 -8.7029 3.4522 34 1 0.1719 -10.4410 4.5014 35 1 -0.9573 -12.1241 3.1031 36 1 -0.6990 -12.0646 0.6550 37 1 0.6888 -10.3224 -0.3947 38 1 0.5314 -7.4165 -1.4609 39 1 -0.1732 -8.5376 -0.2676 40 1 -1.9324 -7.0904 -0.4718 41 1 -1.0267 -6.2524 0.8032 42 1 -1.2186 -5.5876 -2.1430 43 1 -1.5414 -4.5468 -0.7444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:50 Heat of formation + Delta-G solvation = -40.099367 kcal Electronic energy + Delta-G solvation = -23382.240991 eV Core-core repulsion = 20007.346191 eV Total energy + Delta-G solvation = -3374.894800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.08512 -38.90908 -36.47049 -35.75436 -32.88212 -32.11418 -31.49728 -31.07089 -29.08650 -26.36730 -26.09799 -24.33249 -22.81937 -22.71541 -21.35783 -20.68170 -19.94718 -17.42702 -16.97364 -16.63787 -16.27558 -15.74025 -15.43325 -15.10204 -14.78263 -14.51547 -14.22773 -13.84287 -13.71704 -13.60143 -13.23886 -12.89673 -12.76469 -12.62073 -12.08175 -12.02722 -11.82775 -11.42777 -11.24963 -11.19860 -11.03932 -10.91105 -10.79561 -10.52069 -10.19458 -9.96635 -9.47724 -9.08031 -9.05691 -9.01709 -8.81906 -8.18604 -7.88900 -5.87511 -3.50758 1.15800 1.23938 3.35591 3.37566 3.41749 3.51679 4.02859 4.29066 4.37009 4.58833 4.66560 4.82555 4.91513 4.95843 5.04631 5.17650 5.23372 5.32667 5.38084 5.44382 5.46127 5.50193 5.62894 5.67014 5.75037 5.82607 5.83966 5.87756 5.93748 6.12748 6.15243 6.27208 6.31414 6.33922 6.36433 6.47804 6.50666 6.67485 6.71457 6.82625 7.09309 7.36546 7.53539 8.00078 8.49988 9.55476 10.25071 11.33733 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.003109 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.785630 B = 9002.866660 C = 9277.976406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.022 3.978 3 Si 0.924 3.076 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.358 4.358 8 H 0.061 0.939 9 O -0.288 6.288 10 C 0.078 3.922 11 C 0.108 3.892 12 H 0.070 0.930 13 C 0.051 3.949 14 N -0.546 5.546 15 C 0.097 3.903 16 C -0.073 4.073 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.116 4.116 22 C 0.058 3.942 23 C -0.153 4.153 24 C 0.064 3.936 25 O -0.371 6.371 26 H 0.257 0.743 27 H 0.029 0.971 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -23.455 2.992 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.438 4.438 8 H 0.079 0.921 9 O -0.203 6.203 10 C -0.001 4.001 11 C 0.049 3.951 12 H 0.088 0.912 13 C -0.079 4.079 14 N -0.270 5.270 15 C -0.029 4.029 16 C -0.074 4.074 17 C -0.116 4.116 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.068 4.068 23 C -0.191 4.191 24 C -0.012 4.012 25 O -0.289 6.289 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.013 -23.120 3.212 23.342 hybrid contribution 0.902 0.488 -0.464 1.126 sum 0.889 -22.631 2.749 22.815 Atomic orbital electron populations 1.70031 1.05377 1.25723 1.52006 1.24939 0.95650 0.97653 0.99345 0.85979 0.78644 0.82178 0.78019 1.20761 1.20947 1.20096 1.20807 0.90132 0.82779 1.50043 0.92096 1.85662 1.31324 1.10115 1.93234 1.22128 0.92669 0.86931 0.98325 1.21867 0.93352 0.91727 0.88193 0.91170 1.21531 0.95751 0.91156 0.99434 1.59133 1.15168 1.05109 1.47638 1.21009 0.93998 0.88902 0.99011 1.19791 0.98186 0.95570 0.93835 1.21064 0.98394 0.97878 0.94272 1.21166 0.97567 0.95327 0.99867 1.21135 0.99947 0.99119 0.93976 1.21096 0.99237 0.98707 0.95025 1.21066 0.97751 0.95124 0.99510 1.21919 0.91818 0.99332 0.93764 1.22010 0.98105 0.96788 1.02200 1.22870 0.84532 0.94234 0.99580 1.87534 1.25568 1.83969 1.31855 0.93337 0.95338 0.94769 0.95166 0.90202 0.93996 0.89822 0.85853 0.86142 0.86338 0.86256 0.86295 0.93774 0.90131 0.90921 0.90341 0.90262 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.63 13.68 55.48 0.76 -27.87 16 2 C 0.02 0.67 5.49 -17.51 -0.10 0.57 16 3 Si 0.92 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.36 -10.91 9.89 30.88 0.31 -10.60 16 8 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 9 O -0.29 -8.65 9.74 -22.19 -0.22 -8.86 16 10 C 0.08 1.80 5.64 37.16 0.21 2.01 16 11 C 0.11 2.12 2.51 -26.06 -0.07 2.05 16 12 H 0.07 1.46 7.11 -51.93 -0.37 1.09 16 13 C 0.05 0.78 4.52 -6.50 -0.03 0.75 16 14 N -0.55 -7.35 4.09 -241.03 -0.99 -8.34 16 15 C 0.10 1.07 5.13 -4.98 -0.03 1.04 16 16 C -0.07 -0.77 4.87 -104.63 -0.51 -1.28 16 17 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 18 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 19 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -1.11 7.73 -39.58 -0.31 -1.42 16 22 C 0.06 0.75 5.15 -4.48 -0.02 0.73 16 23 C -0.15 -2.10 5.41 -27.47 -0.15 -2.25 16 24 C 0.06 1.08 6.72 37.48 0.25 1.33 16 25 O -0.37 -7.67 9.72 -39.93 -0.39 -8.06 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.08 1.12 7.64 -51.92 -0.40 0.72 16 31 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 1.01 7.60 -52.48 -0.40 0.61 16 38 H 0.04 0.60 7.64 -51.93 -0.40 0.20 16 39 H 0.08 0.91 4.56 -51.93 -0.24 0.67 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.19 7.39 -51.93 -0.38 0.81 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -35.07 345.86 -9.43 -44.50 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.77 Total: -1.30 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.01 Total: -12.88 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.23 Total: -36.20 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.60 Total: -16.92 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.07 -9.43 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.402 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds