Wall clock time and date at job start Tue Mar 31 2020 07:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47117 * 270.00289 * 3 2 1 5 5 H 1.48507 * 109.46909 * 29.99521 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.99758 * 3 2 1 7 7 C 1.38637 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 179.97438 * 7 2 1 9 9 O 1.34934 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.42901 * 116.99894 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46672 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.52850 * 305.13102 * 11 10 9 13 13 C 1.54284 * 109.52408 * 184.99831 * 11 10 9 14 14 N 1.40439 * 111.68210 * 162.88573 * 13 11 10 15 15 C 1.46899 * 111.00209 * 188.30557 * 14 13 11 16 16 C 1.50693 * 109.47451 * 170.00015 * 15 14 13 17 17 C 1.38237 * 120.00117 * 269.73094 * 16 15 14 18 18 C 1.38234 * 120.00035 * 179.81063 * 17 16 15 19 19 C 1.38238 * 120.00100 * 0.41219 * 18 17 16 20 20 C 1.38234 * 119.99691 * 359.81538 * 19 18 17 21 21 C 1.38234 * 120.00181 * 0.02562 * 20 19 18 22 22 C 1.47629 * 114.32009 * 61.80894 * 14 13 11 23 23 C 1.50893 * 108.76681 * 279.98465 * 22 14 13 24 24 C 1.53619 * 111.71211 * 91.01635 * 23 22 14 25 25 O 1.40621 * 109.52914 * 65.34656 * 11 10 9 26 26 H 0.96996 * 119.99866 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46889 * 300.00132 * 10 9 7 28 28 H 1.08999 * 109.47144 * 60.00014 * 10 9 7 29 29 H 1.08994 * 109.04044 * 283.45732 * 13 11 10 30 30 H 1.09010 * 109.03572 * 42.31924 * 13 11 10 31 31 H 1.08998 * 109.47169 * 290.00154 * 15 14 13 32 32 H 1.09002 * 109.46924 * 50.00071 * 15 14 13 33 33 H 1.08004 * 119.99877 * 359.97438 * 17 16 15 34 34 H 1.08000 * 120.00227 * 180.20417 * 18 17 16 35 35 H 1.07998 * 120.00142 * 179.79311 * 19 18 17 36 36 H 1.08001 * 120.00062 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.00160 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.58732 * 39.77207 * 22 14 13 39 39 H 1.09005 * 109.58901 * 160.20241 * 22 14 13 40 40 H 1.08997 * 109.03434 * 211.58700 * 23 22 14 41 41 H 1.08999 * 109.03398 * 330.44691 * 23 22 14 42 42 H 1.08999 * 108.87085 * 79.43171 * 24 23 22 43 43 H 1.09005 * 108.87129 * 197.95215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0091 -1.2006 0.0005 8 1 3.0891 -1.2006 0.0001 9 8 1.3344 -2.3692 0.0005 10 6 2.1128 -3.5676 0.0005 11 6 1.1807 -4.7809 -0.0001 12 1 0.4896 -4.7100 0.8398 13 6 2.0153 -6.0723 0.1266 14 7 1.2239 -7.1656 0.5149 15 6 2.0569 -8.3360 0.8215 16 6 1.2080 -9.4025 1.4640 17 6 1.0668 -9.4387 2.8386 18 6 0.2848 -10.4146 3.4277 19 6 -0.3491 -11.3596 2.6427 20 6 -0.2041 -11.3262 1.2684 21 6 0.5752 -10.3483 0.6791 22 6 0.1552 -7.5130 -0.4425 23 6 -1.0041 -6.5686 -0.2397 24 6 -0.8894 -5.3271 -1.1371 25 8 0.4564 -4.8166 -1.2049 26 1 -0.4850 0.8400 -0.0004 27 1 2.7416 -3.5924 -0.8895 28 1 2.7416 -3.5925 0.8905 29 1 2.4782 -6.2923 -0.8353 30 1 2.7981 -5.9183 0.8694 31 1 2.4919 -8.7238 -0.0996 32 1 2.8543 -8.0453 1.5056 33 1 1.5653 -8.7029 3.4522 34 1 0.1719 -10.4410 4.5014 35 1 -0.9573 -12.1241 3.1031 36 1 -0.6990 -12.0646 0.6550 37 1 0.6888 -10.3224 -0.3947 38 1 0.5314 -7.4165 -1.4609 39 1 -0.1732 -8.5376 -0.2676 40 1 -1.9324 -7.0904 -0.4718 41 1 -1.0267 -6.2524 0.8032 42 1 -1.2186 -5.5876 -2.1430 43 1 -1.5414 -4.5468 -0.7444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:44 Heat of formation + Delta-G solvation = -63.195189 kcal Electronic energy + Delta-G solvation = -23383.242501 eV Core-core repulsion = 20007.346191 eV Total energy + Delta-G solvation = -3375.896310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -41.14626 -39.91243 -38.20573 -37.31593 -34.40728 -33.59917 -32.96134 -31.75331 -30.48398 -27.60997 -27.43416 -26.26552 -24.28456 -23.45197 -22.23790 -21.94323 -21.19988 -19.63469 -18.17921 -17.71512 -17.58439 -17.13629 -16.50363 -16.36105 -15.94483 -15.83698 -15.52741 -15.47328 -15.30790 -14.85517 -14.34527 -14.18690 -13.74841 -13.66768 -13.43780 -13.33688 -13.21459 -12.92707 -12.83301 -12.37726 -12.26229 -12.16591 -12.02885 -11.79550 -11.65748 -11.59929 -11.40109 -11.16263 -10.43239 -10.15435 -9.73924 -9.65191 -9.23339 -8.17243 -5.87600 0.45299 0.55457 1.38909 1.46604 1.55600 2.31662 2.63282 2.84150 3.14739 3.17023 3.50855 3.81781 3.87227 3.98018 4.03469 4.09846 4.19117 4.21024 4.27930 4.32498 4.40574 4.46333 4.56685 4.58458 4.61914 4.66268 4.68477 4.76896 4.80221 4.83471 4.97253 4.99695 5.06804 5.15273 5.19389 5.22208 5.23406 5.60563 5.67658 5.74853 6.07376 6.15767 6.20665 6.25287 6.52301 7.24750 8.05438 9.07926 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.003109 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.785630 B = 9002.866660 C = 9277.976406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.009 2.991 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.380 4.380 8 H 0.074 0.926 9 O -0.332 6.332 10 C 0.070 3.930 11 C 0.114 3.886 12 H 0.049 0.951 13 C 0.069 3.931 14 N -0.557 5.557 15 C 0.101 3.899 16 C -0.087 4.087 17 C -0.114 4.114 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.124 4.124 22 C 0.062 3.938 23 C -0.143 4.143 24 C 0.059 3.941 25 O -0.401 6.401 26 H 0.260 0.740 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.040 0.960 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -24.918 3.100 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.237 4.237 3 Si 0.830 3.170 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.459 4.459 8 H 0.091 0.909 9 O -0.248 6.248 10 C -0.007 4.007 11 C 0.055 3.945 12 H 0.068 0.932 13 C -0.061 4.061 14 N -0.281 5.281 15 C -0.025 4.025 16 C -0.088 4.088 17 C -0.132 4.132 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.064 4.064 23 C -0.181 4.181 24 C -0.017 4.017 25 O -0.321 6.321 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.754 -24.624 3.326 24.859 hybrid contribution 0.620 0.827 -0.485 1.142 sum 1.374 -23.797 2.841 24.005 Atomic orbital electron populations 1.70219 1.07690 1.27180 1.53363 1.26295 0.96807 1.02144 0.98463 0.84720 0.77670 0.75948 0.78623 1.19632 1.20240 1.18045 1.21380 0.90930 0.83550 1.50046 0.90867 1.85600 1.33894 1.11787 1.93526 1.22446 0.93466 0.85991 0.98814 1.21799 0.92928 0.92556 0.87230 0.93238 1.21250 0.95130 0.89690 0.99986 1.59078 1.15611 1.05696 1.47683 1.21027 0.93914 0.87991 0.99594 1.19799 0.98942 0.95966 0.94073 1.21210 0.99069 0.98495 0.94458 1.21422 0.97307 0.95170 1.00896 1.21467 0.99667 0.99255 0.94153 1.21407 0.98811 0.98780 0.95428 1.21246 0.97745 0.95148 1.00076 1.21926 0.91166 0.99963 0.93382 1.21944 1.00199 0.95747 1.00187 1.23053 0.82288 0.94783 1.01546 1.87463 1.27286 1.84917 1.32391 0.93105 0.95395 0.93189 0.95103 0.88897 0.93092 0.89251 0.85956 0.84694 0.84224 0.84141 0.85250 0.94218 0.88026 0.87968 0.92167 0.88018 0.95339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.23 13.68 21.61 0.30 -61.94 16 2 C -0.04 -2.72 5.49 84.83 0.47 -2.25 16 3 Si 1.01 46.55 29.55 68.60 2.03 48.57 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.38 -23.61 9.89 67.92 0.67 -22.94 16 8 H 0.07 4.19 7.77 -2.91 -0.02 4.17 16 9 O -0.33 -20.69 9.74 -76.62 -0.75 -21.44 16 10 C 0.07 3.35 5.64 71.98 0.41 3.76 16 11 C 0.11 4.61 2.51 31.03 0.08 4.69 16 12 H 0.05 2.17 7.11 -2.39 -0.02 2.15 16 13 C 0.07 2.09 4.52 87.91 0.40 2.48 16 14 N -0.56 -14.41 4.09 -916.48 -3.75 -18.17 16 15 C 0.10 2.05 5.13 85.56 0.44 2.48 16 16 C -0.09 -1.69 4.87 -19.87 -0.10 -1.79 16 17 C -0.11 -2.19 9.70 22.27 0.22 -1.97 16 18 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 19 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 20 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 21 C -0.12 -2.08 7.73 22.27 0.17 -1.90 16 22 C 0.06 1.50 5.15 85.48 0.44 1.94 16 23 C -0.14 -3.84 5.41 30.12 0.16 -3.68 16 24 C 0.06 2.03 6.72 72.19 0.48 2.51 16 25 O -0.40 -17.11 9.72 -140.10 -1.36 -18.47 16 26 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.05 2.18 8.05 -2.39 -0.02 2.16 16 29 H 0.03 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.09 2.52 7.64 -2.38 -0.02 2.50 16 31 H 0.05 0.95 8.09 -2.39 -0.02 0.93 16 32 H 0.09 1.69 7.80 -2.39 -0.02 1.67 16 33 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.13 1.84 7.60 -2.91 -0.02 1.81 16 38 H 0.04 1.02 7.64 -2.39 -0.02 1.00 16 39 H 0.10 2.05 4.56 -2.38 -0.01 2.04 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.85 7.39 -2.39 -0.02 1.83 16 42 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -77.91 345.86 1.95 -75.96 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.98 Total: 17.36 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.51 Total: -21.88 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.46 Total: -80.10 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -2.11 Total: -39.91 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -77.91 1.95 -75.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.764 kcal (2) G-P(sol) polarization free energy of solvation -77.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds