Wall clock time and date at job start Tue Mar 31 2020 07:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47054 * 270.00498 * 3 2 1 5 5 H 1.48504 * 109.47205 * 30.00050 * 3 2 1 6 6 H 1.48493 * 109.47486 * 150.00258 * 3 2 1 7 7 C 1.38633 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99929 * 179.97438 * 7 2 1 9 9 O 1.34929 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.42906 * 116.99642 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46591 * 180.02562 * 10 9 7 12 12 H 1.08997 * 108.99131 * 53.85287 * 11 10 9 13 13 C 1.50743 * 108.93229 * 172.66280 * 11 10 9 14 14 N 1.47598 * 108.45651 * 213.94530 * 13 11 10 15 15 C 1.46895 * 110.99986 * 152.98598 * 14 13 11 16 16 C 1.50700 * 109.47550 * 194.49855 * 15 14 13 17 17 C 1.38235 * 120.00273 * 89.99630 * 16 15 14 18 18 C 1.38234 * 120.00220 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38238 * 119.99747 * 359.50225 * 19 18 17 21 21 C 1.38234 * 120.00083 * 0.44989 * 20 19 18 22 22 C 1.40464 * 114.42817 * 279.57057 * 14 13 11 23 23 C 1.54381 * 111.45234 * 61.24503 * 22 14 13 24 24 C 1.50718 * 109.13651 * 284.56680 * 23 22 14 25 25 O 1.43933 * 108.99890 * 294.99415 * 11 10 9 26 26 H 0.97005 * 119.99894 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47336 * 60.00285 * 10 9 7 28 28 H 1.08999 * 109.46503 * 299.99689 * 10 9 7 29 29 H 1.09004 * 109.63953 * 94.25899 * 13 11 10 30 30 H 1.08999 * 109.63876 * 333.64209 * 13 11 10 31 31 H 1.08999 * 109.47513 * 74.49567 * 15 14 13 32 32 H 1.09009 * 109.47383 * 314.49901 * 15 14 13 33 33 H 1.07999 * 119.99770 * 359.97438 * 17 16 15 34 34 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 35 35 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 36 36 H 1.07999 * 119.99927 * 180.28388 * 20 19 18 37 37 H 1.08002 * 120.00281 * 179.83134 * 21 20 19 38 38 H 1.09001 * 109.08041 * 181.75148 * 22 14 13 39 39 H 1.08993 * 109.08272 * 300.79872 * 22 14 13 40 40 H 1.09004 * 109.53194 * 44.46708 * 23 22 14 41 41 H 1.09009 * 109.52825 * 164.67223 * 23 22 14 42 42 H 1.09000 * 108.81106 * 212.39668 * 24 23 22 43 43 H 1.08999 * 108.80662 * 330.77072 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4401 0.6999 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0010 9 8 1.3343 -2.3691 -0.0005 10 6 2.1126 -3.5676 -0.0005 11 6 1.1806 -4.7809 -0.0012 12 1 0.4827 -4.6916 -0.8337 13 6 2.0041 -6.0302 -0.1833 14 7 1.2149 -7.0000 -0.9675 15 6 2.0922 -7.9125 -1.7129 16 6 1.2877 -8.6404 -2.7589 17 6 1.1548 -8.1039 -4.0259 18 6 0.4174 -8.7719 -4.9855 19 6 -0.1922 -9.9734 -4.6763 20 6 -0.0558 -10.5121 -3.4106 21 6 0.6825 -9.8446 -2.4513 22 6 0.2638 -7.7144 -0.2203 23 6 -0.7824 -6.7711 0.4112 24 6 -0.1628 -6.0638 1.5891 25 8 0.4386 -4.8025 1.2320 26 1 -0.4850 0.8401 0.0004 27 1 2.7414 -3.5925 0.8894 28 1 2.7414 -3.5924 -0.8906 29 1 2.2442 -6.4560 0.7910 30 1 2.9231 -5.7886 -0.7173 31 1 2.5331 -8.6348 -1.0260 32 1 2.8843 -7.3407 -2.1966 33 1 1.6272 -7.1629 -4.2662 34 1 0.3139 -8.3529 -5.9756 35 1 -0.7720 -10.4931 -5.4247 36 1 -0.5282 -11.4531 -3.1703 37 1 0.7869 -10.2640 -1.4615 38 1 -0.2441 -8.4231 -0.8745 39 1 0.7724 -8.2628 0.5725 40 1 -1.1035 -6.0364 -0.3272 41 1 -1.6418 -7.3521 0.7460 42 1 -0.9347 -5.8856 2.3379 43 1 0.6037 -6.7068 2.0216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:55 Heat of formation + Delta-G solvation = -37.706317 kcal Electronic energy + Delta-G solvation = -23384.644084 eV Core-core repulsion = 20009.853054 eV Total energy + Delta-G solvation = -3374.791029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.17435 -38.93387 -36.45808 -35.70541 -32.85064 -32.12537 -31.39690 -31.03946 -29.20904 -26.60442 -26.00782 -24.26820 -22.80440 -22.71868 -21.51563 -20.71155 -19.83477 -17.42372 -17.04639 -16.64468 -16.29099 -15.79919 -15.46669 -15.06969 -14.86202 -14.46925 -14.21399 -13.81332 -13.56939 -13.45373 -13.28810 -13.04278 -12.85967 -12.67657 -12.10225 -12.03046 -11.76971 -11.46369 -11.29023 -11.16460 -11.07360 -10.97041 -10.85005 -10.46728 -10.30932 -10.01324 -9.47298 -9.18038 -9.04240 -8.94956 -8.83875 -8.24559 -7.85988 -5.83811 -3.47600 1.17285 1.26684 3.37143 3.39116 3.43655 3.50254 4.01212 4.19870 4.39665 4.58437 4.66650 4.85033 4.86872 4.95286 4.96675 5.07431 5.16370 5.26962 5.34117 5.38683 5.45893 5.47643 5.50419 5.54905 5.63964 5.74090 5.84803 5.85612 5.90058 5.97190 6.08197 6.25240 6.29841 6.35010 6.36996 6.48415 6.50506 6.66121 6.78334 6.84958 7.00795 7.27301 7.55487 7.85236 8.52812 9.58465 10.28819 11.37137 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.003410 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.352368 B = 8210.357514 C = 8870.106894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.023 3.977 3 Si 0.924 3.076 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.361 4.361 8 H 0.061 0.939 9 O -0.285 6.285 10 C 0.081 3.919 11 C 0.100 3.900 12 H 0.077 0.923 13 C 0.039 3.961 14 N -0.547 5.547 15 C 0.098 3.902 16 C -0.076 4.076 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.066 3.934 23 C -0.156 4.156 24 C 0.059 3.941 25 O -0.367 6.367 26 H 0.257 0.743 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.019 0.981 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -22.769 -5.347 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.176 4.176 3 Si 0.751 3.249 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.440 4.440 8 H 0.078 0.922 9 O -0.200 6.200 10 C 0.002 3.998 11 C 0.042 3.958 12 H 0.095 0.905 13 C -0.088 4.088 14 N -0.271 5.271 15 C -0.028 4.028 16 C -0.077 4.077 17 C -0.114 4.114 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.134 4.134 22 C -0.063 4.063 23 C -0.194 4.194 24 C -0.018 4.018 25 O -0.286 6.286 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.037 0.963 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.217 -22.238 -5.510 22.942 hybrid contribution 1.068 0.037 0.431 1.153 sum 2.285 -22.200 -5.078 22.888 Atomic orbital electron populations 1.70048 1.05354 1.25672 1.51795 1.24942 0.95631 0.97635 0.99352 0.85991 0.78664 0.82276 0.77951 1.20792 1.20947 1.20126 1.20800 0.90083 0.82886 1.50218 0.92156 1.85712 1.31074 1.10033 1.93167 1.22154 0.92358 0.87111 0.98163 1.21896 0.93499 0.92591 0.87802 0.90476 1.22425 0.96675 0.92944 0.96733 1.59029 1.17280 1.19313 1.31507 1.21043 0.93822 0.94095 0.93868 1.19790 0.98542 0.94594 0.94772 1.21094 0.98333 0.99304 0.92682 1.21183 0.97740 0.95451 0.99511 1.21142 0.99871 0.96320 0.96764 1.21087 0.99471 0.99939 0.93673 1.21049 0.98030 0.95222 0.99126 1.21236 0.93683 0.95611 0.95748 1.22105 0.98171 0.99843 0.99234 1.22290 0.96517 0.86683 0.96292 1.88525 1.68997 1.30486 1.40616 0.93343 0.95525 0.94667 0.93218 0.89326 0.94010 0.89592 0.85702 0.86056 0.86321 0.86299 0.86470 0.90280 0.96286 0.89357 0.90423 0.89865 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.85 13.67 55.48 0.76 -28.09 16 2 C 0.02 0.69 5.49 -17.51 -0.10 0.59 16 3 Si 0.92 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.36 -11.03 9.89 30.88 0.31 -10.73 16 8 H 0.06 1.72 7.77 -52.48 -0.41 1.31 16 9 O -0.29 -8.63 9.74 -21.67 -0.21 -8.84 16 10 C 0.08 1.86 5.50 37.16 0.20 2.06 16 11 C 0.10 1.96 2.52 -27.86 -0.07 1.89 16 12 H 0.08 1.66 7.26 -51.93 -0.38 1.28 16 13 C 0.04 0.57 4.86 -4.57 -0.02 0.55 16 14 N -0.55 -7.19 4.03 -241.06 -0.97 -8.16 16 15 C 0.10 1.06 5.12 -4.98 -0.03 1.03 16 16 C -0.08 -0.82 4.85 -104.62 -0.51 -1.33 16 17 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 18 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 19 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.12 7.88 -39.58 -0.31 -1.43 16 22 C 0.07 0.81 4.76 -6.44 -0.03 0.78 16 23 C -0.16 -2.09 5.66 -27.15 -0.15 -2.25 16 24 C 0.06 0.91 6.26 36.01 0.23 1.13 16 25 O -0.37 -7.71 10.50 -40.39 -0.42 -8.13 16 26 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.75 7.89 -51.93 -0.41 0.34 16 29 H 0.05 0.70 6.85 -51.93 -0.36 0.35 16 30 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 31 H 0.04 0.41 8.05 -51.93 -0.42 -0.01 16 32 H 0.09 0.87 7.63 -51.92 -0.40 0.48 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.98 7.93 -52.49 -0.42 0.56 16 38 H 0.08 0.91 5.42 -51.93 -0.28 0.62 16 39 H 0.02 0.22 7.62 -51.93 -0.40 -0.18 16 40 H 0.09 1.42 7.25 -51.93 -0.38 1.04 16 41 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -35.79 343.71 -9.39 -45.17 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.63 Total: -1.10 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.06 Total: -13.70 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.21 Total: -36.25 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.64 Total: -16.98 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.79 -9.39 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.468 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds