Wall clock time and date at job start Tue Mar 31 2020 07:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47054 * 270.00498 * 3 2 1 5 5 H 1.48504 * 109.47205 * 30.00050 * 3 2 1 6 6 H 1.48493 * 109.47486 * 150.00258 * 3 2 1 7 7 C 1.38633 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99929 * 179.97438 * 7 2 1 9 9 O 1.34929 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.42906 * 116.99642 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46591 * 180.02562 * 10 9 7 12 12 H 1.08997 * 108.99131 * 53.85287 * 11 10 9 13 13 C 1.50743 * 108.93229 * 172.66280 * 11 10 9 14 14 N 1.47598 * 108.45651 * 213.94530 * 13 11 10 15 15 C 1.46895 * 110.99986 * 152.98598 * 14 13 11 16 16 C 1.50700 * 109.47550 * 194.49855 * 15 14 13 17 17 C 1.38235 * 120.00273 * 89.99630 * 16 15 14 18 18 C 1.38234 * 120.00220 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38238 * 119.99747 * 359.50225 * 19 18 17 21 21 C 1.38234 * 120.00083 * 0.44989 * 20 19 18 22 22 C 1.40464 * 114.42817 * 279.57057 * 14 13 11 23 23 C 1.54381 * 111.45234 * 61.24503 * 22 14 13 24 24 C 1.50718 * 109.13651 * 284.56680 * 23 22 14 25 25 O 1.43933 * 108.99890 * 294.99415 * 11 10 9 26 26 H 0.97005 * 119.99894 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47336 * 60.00285 * 10 9 7 28 28 H 1.08999 * 109.46503 * 299.99689 * 10 9 7 29 29 H 1.09004 * 109.63953 * 94.25899 * 13 11 10 30 30 H 1.08999 * 109.63876 * 333.64209 * 13 11 10 31 31 H 1.08999 * 109.47513 * 74.49567 * 15 14 13 32 32 H 1.09009 * 109.47383 * 314.49901 * 15 14 13 33 33 H 1.07999 * 119.99770 * 359.97438 * 17 16 15 34 34 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 35 35 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 36 36 H 1.07999 * 119.99927 * 180.28388 * 20 19 18 37 37 H 1.08002 * 120.00281 * 179.83134 * 21 20 19 38 38 H 1.09001 * 109.08041 * 181.75148 * 22 14 13 39 39 H 1.08993 * 109.08272 * 300.79872 * 22 14 13 40 40 H 1.09004 * 109.53194 * 44.46708 * 23 22 14 41 41 H 1.09009 * 109.52825 * 164.67223 * 23 22 14 42 42 H 1.09000 * 108.81106 * 212.39668 * 24 23 22 43 43 H 1.08999 * 108.80662 * 330.77072 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4401 0.6999 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0010 9 8 1.3343 -2.3691 -0.0005 10 6 2.1126 -3.5676 -0.0005 11 6 1.1806 -4.7809 -0.0012 12 1 0.4827 -4.6916 -0.8337 13 6 2.0041 -6.0302 -0.1833 14 7 1.2149 -7.0000 -0.9675 15 6 2.0922 -7.9125 -1.7129 16 6 1.2877 -8.6404 -2.7589 17 6 1.1548 -8.1039 -4.0259 18 6 0.4174 -8.7719 -4.9855 19 6 -0.1922 -9.9734 -4.6763 20 6 -0.0558 -10.5121 -3.4106 21 6 0.6825 -9.8446 -2.4513 22 6 0.2638 -7.7144 -0.2203 23 6 -0.7824 -6.7711 0.4112 24 6 -0.1628 -6.0638 1.5891 25 8 0.4386 -4.8025 1.2320 26 1 -0.4850 0.8401 0.0004 27 1 2.7414 -3.5925 0.8894 28 1 2.7414 -3.5924 -0.8906 29 1 2.2442 -6.4560 0.7910 30 1 2.9231 -5.7886 -0.7173 31 1 2.5331 -8.6348 -1.0260 32 1 2.8843 -7.3407 -2.1966 33 1 1.6272 -7.1629 -4.2662 34 1 0.3139 -8.3529 -5.9756 35 1 -0.7720 -10.4931 -5.4247 36 1 -0.5282 -11.4531 -3.1703 37 1 0.7869 -10.2640 -1.4615 38 1 -0.2441 -8.4231 -0.8745 39 1 0.7724 -8.2628 0.5725 40 1 -1.1035 -6.0364 -0.3272 41 1 -1.6418 -7.3521 0.7460 42 1 -0.9347 -5.8856 2.3379 43 1 0.6037 -6.7068 2.0216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:52 Heat of formation + Delta-G solvation = -61.859896 kcal Electronic energy + Delta-G solvation = -23385.691461 eV Core-core repulsion = 20009.853054 eV Total energy + Delta-G solvation = -3375.838407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21347 -39.89382 -38.22976 -37.21782 -34.36980 -33.53482 -32.96851 -31.75417 -30.50619 -27.87758 -27.26320 -26.20227 -24.28706 -23.47325 -22.41302 -21.73702 -21.16917 -19.60522 -18.27624 -17.74532 -17.53644 -17.11647 -16.62279 -16.32551 -15.91123 -15.72355 -15.50104 -15.46198 -15.21322 -14.73289 -14.32158 -14.15937 -13.88244 -13.66836 -13.49331 -13.39581 -13.19205 -12.84657 -12.80460 -12.58805 -12.24054 -12.12737 -11.99725 -11.81987 -11.63664 -11.54711 -11.40001 -11.27241 -10.41392 -10.13945 -9.76687 -9.68151 -9.21949 -8.14752 -5.85520 0.43885 0.54371 1.39692 1.47709 1.56745 2.33733 2.64033 2.80063 3.12633 3.18022 3.62813 3.74179 3.86133 3.90951 3.99474 4.02155 4.15403 4.20023 4.29589 4.31053 4.37273 4.43999 4.48413 4.56782 4.62507 4.64400 4.65521 4.74784 4.78528 4.81069 4.92097 5.00004 5.12961 5.14884 5.19780 5.23895 5.26706 5.59173 5.66274 5.73831 5.96135 6.16143 6.22492 6.26407 6.49094 7.26772 8.09196 9.10567 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.003410 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.352368 B = 8210.357514 C = 8870.106894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.046 4.046 3 Si 1.010 2.990 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.381 4.381 8 H 0.075 0.925 9 O -0.332 6.332 10 C 0.073 3.927 11 C 0.112 3.888 12 H 0.047 0.953 13 C 0.053 3.947 14 N -0.562 5.562 15 C 0.102 3.898 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.120 4.120 22 C 0.070 3.930 23 C -0.151 4.151 24 C 0.053 3.947 25 O -0.412 6.412 26 H 0.260 0.740 27 H 0.029 0.971 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -24.383 -5.358 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.239 4.239 3 Si 0.831 3.169 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.460 4.460 8 H 0.092 0.908 9 O -0.248 6.248 10 C -0.005 4.005 11 C 0.054 3.946 12 H 0.065 0.935 13 C -0.074 4.074 14 N -0.286 5.286 15 C -0.024 4.024 16 C -0.090 4.090 17 C -0.135 4.135 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.139 4.139 22 C -0.059 4.059 23 C -0.189 4.189 24 C -0.023 4.023 25 O -0.332 6.332 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.108 0.892 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.326 -23.898 -5.529 24.640 hybrid contribution 0.676 0.413 0.422 0.897 sum 3.002 -23.485 -5.107 24.221 Atomic orbital electron populations 1.70245 1.07764 1.27127 1.53350 1.26322 0.96789 1.02237 0.98508 0.84709 0.77562 0.75888 0.78722 1.19299 1.20440 1.18157 1.21395 0.90935 0.83636 1.50022 0.90771 1.85647 1.33860 1.11830 1.93483 1.22494 0.93177 0.85997 0.98816 1.21735 0.92802 0.93506 0.86573 0.93483 1.22186 0.96172 0.91181 0.97839 1.58908 1.17881 1.20192 1.31619 1.21062 0.93488 0.93975 0.93907 1.19855 0.99273 0.95297 0.94618 1.21221 0.99255 0.99562 0.93479 1.21416 0.97727 0.95967 0.99950 1.21467 0.99570 0.96017 0.97523 1.21427 0.98979 1.00685 0.93409 1.21266 0.97723 0.94814 1.00080 1.21244 0.93196 0.95171 0.96308 1.22087 0.99635 0.99514 0.97680 1.22561 0.97220 0.85236 0.97285 1.88439 1.69828 1.34049 1.40927 0.93155 0.95259 0.92995 0.92146 0.87973 0.92324 0.89425 0.86350 0.84949 0.84237 0.83988 0.84919 0.89215 0.94527 0.92734 0.87605 0.89201 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.10 13.67 21.61 0.30 -62.81 16 2 C -0.05 -2.84 5.49 84.82 0.47 -2.37 16 3 Si 1.01 46.83 29.55 68.60 2.03 48.86 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.38 -23.81 9.89 67.91 0.67 -23.14 16 8 H 0.07 4.25 7.77 -2.91 -0.02 4.22 16 9 O -0.33 -20.95 9.74 -77.05 -0.75 -21.70 16 10 C 0.07 3.44 5.50 71.98 0.40 3.84 16 11 C 0.11 4.52 2.52 29.86 0.08 4.59 16 12 H 0.05 2.15 7.26 -2.39 -0.02 2.13 16 13 C 0.05 1.52 4.86 85.44 0.42 1.93 16 14 N -0.56 -14.13 4.03 -916.58 -3.69 -17.82 16 15 C 0.10 2.02 5.12 85.56 0.44 2.46 16 16 C -0.09 -1.81 4.85 -19.87 -0.10 -1.90 16 17 C -0.12 -2.48 9.70 22.27 0.22 -2.27 16 18 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 19 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 20 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 21 C -0.12 -2.04 7.88 22.27 0.18 -1.87 16 22 C 0.07 1.55 4.76 87.94 0.42 1.97 16 23 C -0.15 -3.96 5.66 30.32 0.17 -3.79 16 24 C 0.05 1.60 6.26 71.24 0.45 2.05 16 25 O -0.41 -17.84 10.50 -144.05 -1.51 -19.35 16 26 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 2.24 7.89 -2.39 -0.02 2.22 16 29 H 0.06 1.60 6.85 -2.38 -0.02 1.58 16 30 H 0.10 2.60 7.00 -2.39 -0.02 2.58 16 31 H 0.06 0.97 8.05 -2.39 -0.02 0.96 16 32 H 0.09 1.68 7.63 -2.38 -0.02 1.66 16 33 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.13 1.78 7.93 -2.91 -0.02 1.76 16 38 H 0.09 1.84 5.42 -2.39 -0.01 1.83 16 39 H 0.04 0.71 7.62 -2.39 -0.02 0.69 16 40 H 0.05 1.81 7.25 -2.39 -0.02 1.80 16 41 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.06 1.51 6.60 -2.39 -0.02 1.50 16 Total: -1.00 -80.44 343.71 1.81 -78.63 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.98 Total: 18.51 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.47 Total: -24.32 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -3.40 Total: -80.63 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -2.26 Total: -41.05 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -80.44 1.81 -78.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.768 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds