Wall clock time and date at job start Tue Mar 31 2020 07:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46891 * 109.47284 * 2 1 4 4 C 1.46901 * 109.46980 * 239.99664 * 2 1 3 5 5 C 1.46904 * 109.46916 * 120.00013 * 2 1 3 6 6 C 1.53002 * 109.47333 * 64.50871 * 5 2 1 7 7 H 1.09001 * 109.47220 * 53.28854 * 6 5 2 8 8 C 1.50695 * 109.47162 * 173.29422 * 6 5 2 9 9 H 1.07998 * 119.99889 * 239.99675 * 8 6 5 10 10 C 1.37876 * 120.00260 * 59.99879 * 8 6 5 11 11 N 1.31511 * 119.99794 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00157 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47109 * 90.00061 * 12 10 8 14 14 H 1.48496 * 109.46966 * 210.00124 * 12 10 8 15 15 H 1.48500 * 109.47103 * 329.99963 * 12 10 8 16 16 O 1.42906 * 109.46964 * 293.29422 * 6 5 2 17 17 C 1.35603 * 116.99826 * 149.99956 * 16 6 5 18 18 N 1.30225 * 126.36368 * 359.97378 * 17 16 6 19 19 O 1.41342 * 109.66062 * 180.02562 * 18 17 16 20 20 C 1.34854 * 109.44974 * 359.97438 * 19 18 17 21 21 C 1.38985 * 133.36406 * 180.02562 * 20 19 18 22 22 C 1.37816 * 119.79985 * 180.27920 * 21 20 19 23 23 C 1.38763 * 120.57654 * 359.37593 * 22 21 20 24 24 C 1.36671 * 120.48361 * 0.66080 * 23 22 21 25 25 C 1.39547 * 119.80912 * 359.65858 * 24 23 22 26 26 H 1.08994 * 109.47277 * 290.67512 * 1 2 3 27 27 H 1.09005 * 109.46997 * 50.67433 * 1 2 3 28 28 H 1.09005 * 109.47343 * 170.67120 * 1 2 3 29 29 H 1.09004 * 109.47323 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47276 * 299.99495 * 3 2 1 31 31 H 1.09001 * 109.47459 * 60.00193 * 3 2 1 32 32 H 1.09001 * 109.47299 * 300.00045 * 4 2 1 33 33 H 1.09001 * 109.46962 * 60.00261 * 4 2 1 34 34 H 1.09003 * 109.47339 * 180.02562 * 4 2 1 35 35 H 1.08994 * 109.46965 * 304.50526 * 5 2 1 36 36 H 1.09005 * 109.46921 * 184.50195 * 5 2 1 37 37 H 0.97002 * 119.99862 * 180.02562 * 11 10 8 38 38 H 1.08000 * 120.10140 * 0.02562 * 21 20 19 39 39 H 1.07995 * 119.71459 * 179.70047 * 22 21 20 40 40 H 1.08001 * 119.75293 * 180.34186 * 23 22 21 41 41 H 1.07994 * 120.09404 * 179.68050 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3849 0.0000 4 6 1.9586 -0.6926 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.5433 -2.1641 1.1441 7 1 1.8696 -2.5984 0.1991 8 6 2.1824 -2.9097 2.2871 9 1 2.8487 -3.7359 2.0874 10 6 1.9165 -2.5373 3.5877 11 7 1.1047 -1.5316 3.8308 12 14 2.7081 -3.4621 5.0045 13 1 4.0041 -2.8244 5.3492 14 1 1.8081 -3.4239 6.1850 15 1 2.9415 -4.8734 4.6056 16 8 0.1213 -2.2619 1.2473 17 6 -0.4705 -3.3104 0.6236 18 7 0.1304 -4.2398 -0.0627 19 8 -0.8238 -5.1576 -0.5576 20 6 -2.0567 -4.7808 -0.1618 21 6 -3.3263 -5.3099 -0.3613 22 6 -4.4246 -4.6778 0.1805 23 6 -4.2736 -3.5233 0.9354 24 6 -3.0334 -2.9874 1.1420 25 6 -1.9094 -3.6089 0.5964 26 1 -0.3633 0.3628 0.9614 27 1 -0.3633 0.6513 -0.7950 28 1 -0.3634 -1.0141 -0.1666 29 1 3.0487 1.3849 0.0005 30 1 1.5954 1.8987 -0.8900 31 1 1.5953 1.8988 0.8900 32 1 1.5952 -1.7202 -1.1994 33 1 1.5953 -0.1787 -2.0894 34 1 3.0486 -0.6930 -1.1992 35 1 1.5308 -0.2274 2.0876 36 1 3.0456 -0.6232 1.2407 37 1 0.9179 -1.2694 4.7458 38 1 -3.4523 -6.2114 -0.9425 39 1 -5.4110 -5.0875 0.0206 40 1 -5.1429 -3.0419 1.3583 41 1 -2.9236 -2.0858 1.7263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226400128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:00 Heat of formation + Delta-G solvation = 142.036480 kcal Electronic energy + Delta-G solvation = -24585.542551 eV Core-core repulsion = 21166.775583 eV Total energy + Delta-G solvation = -3418.766968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.48157 -42.41270 -39.37572 -38.45434 -35.06094 -33.43411 -31.72190 -31.25564 -30.86803 -30.45818 -30.33202 -27.93084 -25.29265 -24.35330 -23.64284 -23.07611 -22.02764 -19.33674 -19.06465 -18.69596 -18.52645 -18.05783 -17.56114 -16.99193 -16.66365 -16.33288 -16.06042 -15.51817 -15.25413 -15.04420 -14.87535 -14.74439 -14.34077 -14.23096 -14.11862 -14.02908 -13.87140 -13.64641 -13.24125 -13.14039 -13.08936 -12.80689 -12.26177 -12.14167 -12.02622 -11.99667 -11.33760 -11.29436 -10.40664 -10.27448 -9.80883 -9.33227 -7.91524 -6.11758 -0.16660 0.20631 0.40831 1.39629 1.62921 2.02945 2.10144 2.20811 2.22068 2.23473 2.28239 2.33661 2.73110 2.93845 3.08079 3.12630 3.33038 3.38934 3.50035 3.53374 3.55687 3.61636 3.68182 3.70861 3.74915 3.84279 4.00562 4.04022 4.06849 4.24528 4.28587 4.42627 4.55505 4.68947 4.93406 5.01964 5.18953 5.31015 5.46085 5.71100 5.98449 6.13549 6.32868 6.65978 7.09803 7.73309 9.11749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.275 5.275 3 C -0.040 4.040 4 C -0.049 4.049 5 C -0.001 4.001 6 C 0.187 3.813 7 H 0.061 0.939 8 C -0.555 4.555 9 H 0.083 0.917 10 C 0.089 3.911 11 N -0.862 5.862 12 Si 0.907 3.093 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.265 1.265 16 O -0.272 6.272 17 C 0.324 3.676 18 N -0.345 5.345 19 O -0.088 6.088 20 C 0.098 3.902 21 C -0.134 4.134 22 C -0.056 4.056 23 C -0.158 4.158 24 C -0.027 4.027 25 C -0.193 4.193 26 H 0.123 0.877 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.161 0.839 36 H 0.129 0.871 37 H 0.281 0.719 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 12.043 -11.213 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 N 0.067 4.933 3 C -0.182 4.182 4 C -0.191 4.191 5 C -0.119 4.119 6 C 0.134 3.866 7 H 0.078 0.922 8 C -0.591 4.591 9 H 0.101 0.899 10 C -0.121 4.121 11 N -0.496 5.496 12 Si 0.733 3.267 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.189 1.189 16 O -0.176 6.176 17 C 0.107 3.893 18 N -0.117 5.117 19 O -0.097 6.097 20 C 0.044 3.956 21 C -0.153 4.153 22 C -0.076 4.076 23 C -0.176 4.176 24 C -0.047 4.047 25 C -0.197 4.197 26 H 0.141 0.859 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.352 11.928 -11.346 16.518 hybrid contribution -0.145 -0.281 1.273 1.312 sum -1.497 11.647 -10.072 15.471 Atomic orbital electron populations 1.24274 0.76604 1.09186 1.08212 1.46416 1.15499 1.14772 1.16634 1.24013 1.05058 0.80842 1.08249 1.24116 1.05278 1.02545 0.87166 1.24897 1.03864 0.96589 0.86592 1.20548 0.76476 0.89905 0.99707 0.92159 1.21260 1.30396 1.18115 0.89368 0.89871 1.25115 0.92869 0.94223 0.99896 1.69596 1.31546 1.25530 1.22920 0.86248 0.79490 0.80835 0.80167 1.19425 1.20063 1.18891 1.86578 1.26837 1.37374 1.66789 1.22622 0.89821 0.88366 0.88457 1.80321 1.06177 1.03395 1.21822 1.89171 1.11451 1.43716 1.65325 1.20196 0.88593 0.92807 0.94037 1.20093 0.87514 1.02524 1.05210 1.21191 0.98338 0.94110 0.93921 1.20832 0.97352 0.97696 1.01732 1.20487 0.90377 0.98783 0.95075 1.20127 0.91329 0.99793 1.08401 0.85854 0.87801 0.86008 0.86675 0.87081 0.86398 0.86356 0.86950 0.86304 0.82156 0.85345 0.90851 0.84244 0.84267 0.84801 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.36 7.17 60.06 0.43 0.79 16 2 N -0.27 2.61 0.05 -395.63 -0.02 2.60 16 3 C -0.04 0.50 8.00 60.06 0.48 0.98 16 4 C -0.05 0.50 7.54 60.07 0.45 0.96 16 5 C 0.00 0.00 3.53 -3.82 -0.01 -0.01 16 6 C 0.19 0.35 1.74 -27.88 -0.05 0.30 16 7 H 0.06 0.05 5.01 -51.93 -0.26 -0.21 16 8 C -0.56 -4.26 8.90 -34.44 -0.31 -4.57 16 9 H 0.08 0.79 7.81 -52.49 -0.41 0.38 16 10 C 0.09 0.79 5.24 -17.82 -0.09 0.70 16 11 N -0.86 -7.05 10.95 55.43 0.61 -6.45 16 12 Si 0.91 8.26 29.54 -169.99 -5.02 3.24 16 13 H -0.27 -2.43 7.11 56.52 0.40 -2.03 16 14 H -0.28 -2.81 7.11 56.52 0.40 -2.41 16 15 H -0.26 -2.77 7.11 56.52 0.40 -2.37 16 16 O -0.27 -0.79 6.42 -18.51 -0.12 -0.91 16 17 C 0.32 1.44 7.30 -14.69 -0.11 1.33 16 18 N -0.35 -2.10 11.77 31.85 0.37 -1.73 16 19 O -0.09 -0.56 12.06 7.59 0.09 -0.47 16 20 C 0.10 0.41 7.48 -38.51 -0.29 0.12 16 21 C -0.13 -0.19 10.07 -39.46 -0.40 -0.59 16 22 C -0.06 0.02 10.02 -39.54 -0.40 -0.38 16 23 C -0.16 0.02 9.98 -39.95 -0.40 -0.38 16 24 C -0.03 -0.04 10.05 -39.66 -0.40 -0.44 16 25 C -0.19 -0.71 6.36 -105.07 -0.67 -1.38 16 26 H 0.12 -0.95 7.94 -51.93 -0.41 -1.36 16 27 H 0.10 -1.22 8.01 -51.93 -0.42 -1.64 16 28 H 0.12 -0.69 4.96 -51.93 -0.26 -0.95 16 29 H 0.11 -1.52 8.12 -51.93 -0.42 -1.94 16 30 H 0.11 -1.61 8.07 -51.93 -0.42 -2.02 16 31 H 0.12 -1.44 8.14 -51.93 -0.42 -1.87 16 32 H 0.12 -0.86 5.86 -51.93 -0.30 -1.16 16 33 H 0.11 -1.43 8.14 -51.93 -0.42 -1.85 16 34 H 0.12 -1.35 8.14 -51.93 -0.42 -1.77 16 35 H 0.16 -0.22 6.12 -51.93 -0.32 -0.54 16 36 H 0.13 -0.63 8.09 -51.93 -0.42 -1.05 16 37 H 0.28 2.45 8.31 -40.82 -0.34 2.11 16 38 H 0.14 -0.06 8.06 -52.49 -0.42 -0.48 16 39 H 0.14 -0.42 8.06 -52.49 -0.42 -0.84 16 40 H 0.13 -0.32 8.06 -52.49 -0.42 -0.74 16 41 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 LS Contribution 330.40 15.07 4.98 4.98 Total: 0.00 -17.87 330.40 -6.59 -24.46 By element: Atomic # 1 Polarization: -17.44 SS G_CDS: -5.73 Total: -23.17 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.75 Total: -2.55 kcal Atomic # 7 Polarization: -6.54 SS G_CDS: 0.96 Total: -5.58 kcal Atomic # 8 Polarization: -1.35 SS G_CDS: -0.03 Total: -1.38 kcal Atomic # 14 Polarization: 8.26 SS G_CDS: -5.02 Total: 3.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -17.87 -6.59 -24.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226400128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.500 kcal (2) G-P(sol) polarization free energy of solvation -17.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds