Wall clock time and date at job start Tue Mar 31 2020 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46891 * 109.47284 * 2 1 4 4 C 1.46901 * 109.46980 * 239.99664 * 2 1 3 5 5 C 1.46904 * 109.46916 * 120.00013 * 2 1 3 6 6 C 1.53002 * 109.47333 * 64.50871 * 5 2 1 7 7 H 1.09001 * 109.47220 * 53.28854 * 6 5 2 8 8 C 1.50695 * 109.47162 * 173.29422 * 6 5 2 9 9 H 1.07998 * 119.99889 * 239.99675 * 8 6 5 10 10 C 1.37876 * 120.00260 * 59.99879 * 8 6 5 11 11 N 1.31511 * 119.99794 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00157 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47109 * 90.00061 * 12 10 8 14 14 H 1.48496 * 109.46966 * 210.00124 * 12 10 8 15 15 H 1.48500 * 109.47103 * 329.99963 * 12 10 8 16 16 O 1.42906 * 109.46964 * 293.29422 * 6 5 2 17 17 C 1.35603 * 116.99826 * 149.99956 * 16 6 5 18 18 N 1.30225 * 126.36368 * 359.97378 * 17 16 6 19 19 O 1.41342 * 109.66062 * 180.02562 * 18 17 16 20 20 C 1.34854 * 109.44974 * 359.97438 * 19 18 17 21 21 C 1.38985 * 133.36406 * 180.02562 * 20 19 18 22 22 C 1.37816 * 119.79985 * 180.27920 * 21 20 19 23 23 C 1.38763 * 120.57654 * 359.37593 * 22 21 20 24 24 C 1.36671 * 120.48361 * 0.66080 * 23 22 21 25 25 C 1.39547 * 119.80912 * 359.65858 * 24 23 22 26 26 H 1.08994 * 109.47277 * 290.67512 * 1 2 3 27 27 H 1.09005 * 109.46997 * 50.67433 * 1 2 3 28 28 H 1.09005 * 109.47343 * 170.67120 * 1 2 3 29 29 H 1.09004 * 109.47323 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47276 * 299.99495 * 3 2 1 31 31 H 1.09001 * 109.47459 * 60.00193 * 3 2 1 32 32 H 1.09001 * 109.47299 * 300.00045 * 4 2 1 33 33 H 1.09001 * 109.46962 * 60.00261 * 4 2 1 34 34 H 1.09003 * 109.47339 * 180.02562 * 4 2 1 35 35 H 1.08994 * 109.46965 * 304.50526 * 5 2 1 36 36 H 1.09005 * 109.46921 * 184.50195 * 5 2 1 37 37 H 0.97002 * 119.99862 * 180.02562 * 11 10 8 38 38 H 1.08000 * 120.10140 * 0.02562 * 21 20 19 39 39 H 1.07995 * 119.71459 * 179.70047 * 22 21 20 40 40 H 1.08001 * 119.75293 * 180.34186 * 23 22 21 41 41 H 1.07994 * 120.09404 * 179.68050 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3849 0.0000 4 6 1.9586 -0.6926 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.5433 -2.1641 1.1441 7 1 1.8696 -2.5984 0.1991 8 6 2.1824 -2.9097 2.2871 9 1 2.8487 -3.7359 2.0874 10 6 1.9165 -2.5373 3.5877 11 7 1.1047 -1.5316 3.8308 12 14 2.7081 -3.4621 5.0045 13 1 4.0041 -2.8244 5.3492 14 1 1.8081 -3.4239 6.1850 15 1 2.9415 -4.8734 4.6056 16 8 0.1213 -2.2619 1.2473 17 6 -0.4705 -3.3104 0.6236 18 7 0.1304 -4.2398 -0.0627 19 8 -0.8238 -5.1576 -0.5576 20 6 -2.0567 -4.7808 -0.1618 21 6 -3.3263 -5.3099 -0.3613 22 6 -4.4246 -4.6778 0.1805 23 6 -4.2736 -3.5233 0.9354 24 6 -3.0334 -2.9874 1.1420 25 6 -1.9094 -3.6089 0.5964 26 1 -0.3633 0.3628 0.9614 27 1 -0.3633 0.6513 -0.7950 28 1 -0.3634 -1.0141 -0.1666 29 1 3.0487 1.3849 0.0005 30 1 1.5954 1.8987 -0.8900 31 1 1.5953 1.8988 0.8900 32 1 1.5952 -1.7202 -1.1994 33 1 1.5953 -0.1787 -2.0894 34 1 3.0486 -0.6930 -1.1992 35 1 1.5308 -0.2274 2.0876 36 1 3.0456 -0.6232 1.2407 37 1 0.9179 -1.2694 4.7458 38 1 -3.4523 -6.2114 -0.9425 39 1 -5.4110 -5.0875 0.0206 40 1 -5.1429 -3.0419 1.3583 41 1 -2.9236 -2.0858 1.7263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226400128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:57 Heat of formation + Delta-G solvation = 136.016199 kcal Electronic energy + Delta-G solvation = -24585.803610 eV Core-core repulsion = 21166.775583 eV Total energy + Delta-G solvation = -3419.028027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.02176 -42.52052 -39.51369 -38.59249 -35.50114 -33.73882 -31.75856 -31.39531 -30.99308 -29.66033 -29.54354 -28.00147 -25.27936 -24.27263 -23.72052 -23.07968 -22.19069 -19.56482 -18.92339 -18.51424 -17.97250 -17.90244 -17.38704 -17.18406 -16.87551 -16.60867 -16.37071 -15.61993 -15.27982 -14.97266 -14.59116 -14.42875 -14.31716 -13.77499 -13.46174 -13.36872 -13.31209 -13.28585 -13.25807 -13.09380 -13.02762 -13.01187 -12.87035 -12.69426 -12.35947 -12.08112 -11.92818 -11.57267 -10.96552 -10.66643 -9.97965 -9.49964 -8.56253 -6.72696 -0.31394 0.29332 0.89619 1.12605 1.25604 1.38364 1.39852 1.45226 1.96169 2.19048 2.63861 2.70336 2.93872 3.00318 3.06806 3.31396 3.51624 3.70712 3.86956 4.01727 4.08500 4.14749 4.19955 4.24623 4.27950 4.33123 4.40631 4.43934 4.51116 4.53814 4.64964 4.67024 4.78068 4.79712 4.93963 5.05749 5.09522 5.29155 5.41401 5.44946 5.59932 5.67812 6.04041 6.30292 6.52728 7.10158 8.44022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.261 5.261 3 C -0.042 4.042 4 C -0.053 4.053 5 C 0.021 3.979 6 C 0.184 3.816 7 H 0.067 0.933 8 C -0.570 4.570 9 H 0.052 0.948 10 C 0.076 3.924 11 N -0.858 5.858 12 Si 0.921 3.079 13 H -0.265 1.265 14 H -0.290 1.290 15 H -0.291 1.291 16 O -0.263 6.263 17 C 0.323 3.677 18 N -0.376 5.376 19 O -0.114 6.114 20 C 0.069 3.931 21 C -0.143 4.143 22 C -0.046 4.046 23 C -0.151 4.151 24 C -0.034 4.034 25 C -0.211 4.211 26 H 0.113 0.887 27 H 0.145 0.855 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.276 0.724 38 H 0.154 0.846 39 H 0.175 0.825 40 H 0.165 0.835 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 14.525 -12.732 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.081 4.919 3 C -0.182 4.182 4 C -0.194 4.194 5 C -0.100 4.100 6 C 0.130 3.870 7 H 0.084 0.916 8 C -0.608 4.608 9 H 0.070 0.930 10 C -0.133 4.133 11 N -0.493 5.493 12 Si 0.749 3.251 13 H -0.190 1.190 14 H -0.215 1.215 15 H -0.217 1.217 16 O -0.166 6.166 17 C 0.107 3.893 18 N -0.149 5.149 19 O -0.122 6.122 20 C 0.016 3.984 21 C -0.162 4.162 22 C -0.065 4.065 23 C -0.168 4.168 24 C -0.054 4.054 25 C -0.215 4.215 26 H 0.132 0.868 27 H 0.164 0.836 28 H 0.108 0.892 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.192 0.808 40 H 0.182 0.818 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.970 14.429 -12.868 19.560 hybrid contribution 0.262 -1.103 1.684 2.030 sum -2.708 13.326 -11.184 17.606 Atomic orbital electron populations 1.24262 0.76849 1.07992 1.09278 1.46047 1.15193 1.16129 1.14551 1.24262 1.05931 0.78214 1.09815 1.24253 1.06292 1.01033 0.87790 1.24141 1.04411 0.93090 0.88361 1.20603 0.75303 0.93373 0.97723 0.91557 1.21357 1.30144 1.18063 0.91187 0.92977 1.25137 0.93623 0.94677 0.99875 1.69638 1.31991 1.25508 1.22166 0.86113 0.79429 0.79359 0.80152 1.18997 1.21542 1.21729 1.86600 1.26864 1.36450 1.66719 1.22856 0.90595 0.88031 0.87788 1.80230 1.07059 1.04374 1.23276 1.89086 1.12578 1.44336 1.66244 1.20673 0.88735 0.93759 0.95207 1.20475 0.86886 1.03255 1.05599 1.21654 0.99151 0.93458 0.92232 1.21257 0.97571 0.97379 1.00638 1.20741 0.90313 0.99254 0.95075 1.20308 0.91440 1.00341 1.09450 0.86831 0.83648 0.89249 0.85492 0.83874 0.86521 0.89822 0.83377 0.84816 0.84005 0.83893 0.91447 0.82830 0.80810 0.81763 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.77 7.17 127.69 0.91 1.68 16 2 N -0.26 5.25 0.05 ******* -0.07 5.18 16 3 C -0.04 1.18 8.00 127.69 1.02 2.20 16 4 C -0.05 1.13 7.54 127.69 0.96 2.09 16 5 C 0.02 -0.15 3.53 86.30 0.30 0.16 16 6 C 0.18 1.06 1.74 29.85 0.05 1.11 16 7 H 0.07 0.29 5.01 -2.39 -0.01 0.28 16 8 C -0.57 -10.46 8.90 25.60 0.23 -10.24 16 9 H 0.05 1.22 7.81 -2.91 -0.02 1.20 16 10 C 0.08 1.54 5.24 84.65 0.44 1.98 16 11 N -0.86 -15.52 10.95 21.45 0.23 -15.28 16 12 Si 0.92 19.37 29.54 68.60 2.03 21.39 16 13 H -0.27 -5.27 7.11 99.48 0.71 -4.56 16 14 H -0.29 -6.65 7.11 99.48 0.71 -5.94 16 15 H -0.29 -7.26 7.11 99.48 0.71 -6.56 16 16 O -0.26 -2.09 6.42 -89.14 -0.57 -2.66 16 17 C 0.32 3.72 7.30 87.22 0.64 4.36 16 18 N -0.38 -5.85 11.77 -167.07 -1.97 -7.82 16 19 O -0.11 -1.81 12.06 29.56 0.36 -1.45 16 20 C 0.07 0.71 7.48 22.96 0.17 0.88 16 21 C -0.14 -0.43 10.07 22.35 0.23 -0.20 16 22 C -0.05 0.11 10.02 22.30 0.22 0.33 16 23 C -0.15 0.30 9.98 22.03 0.22 0.52 16 24 C -0.03 -0.09 10.05 22.22 0.22 0.13 16 25 C -0.21 -1.91 6.36 -20.16 -0.13 -2.04 16 26 H 0.11 -1.77 7.94 -2.39 -0.02 -1.79 16 27 H 0.15 -3.83 8.01 -2.38 -0.02 -3.85 16 28 H 0.09 -0.93 4.96 -2.38 -0.01 -0.94 16 29 H 0.13 -3.72 8.12 -2.38 -0.02 -3.74 16 30 H 0.14 -4.76 8.07 -2.39 -0.02 -4.78 16 31 H 0.12 -3.09 8.14 -2.39 -0.02 -3.11 16 32 H 0.08 -1.11 5.86 -2.39 -0.01 -1.12 16 33 H 0.15 -4.19 8.14 -2.39 -0.02 -4.21 16 34 H 0.13 -3.24 8.14 -2.39 -0.02 -3.26 16 35 H 0.14 -0.31 6.12 -2.39 -0.01 -0.33 16 36 H 0.14 -1.42 8.09 -2.38 -0.02 -1.44 16 37 H 0.28 5.23 8.31 -92.71 -0.77 4.46 16 38 H 0.15 -0.12 8.06 -2.91 -0.02 -0.15 16 39 H 0.17 -1.63 8.06 -2.91 -0.02 -1.65 16 40 H 0.16 -1.33 8.06 -2.91 -0.02 -1.35 16 41 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 Total: 0.00 -47.12 330.40 6.54 -40.58 By element: Atomic # 1 Polarization: -43.94 SS G_CDS: 1.03 Total: -42.92 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.50 Total: 2.97 kcal Atomic # 7 Polarization: -16.12 SS G_CDS: -1.80 Total: -17.92 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.22 Total: -4.11 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: 2.03 Total: 21.39 kcal Total: -47.12 6.54 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226400128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.601 kcal (2) G-P(sol) polarization free energy of solvation -47.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds