Wall clock time and date at job start Tue Mar 31 2020 07:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 109.47157 * 2 1 4 4 C 1.46897 * 109.47438 * 239.99131 * 2 1 3 5 5 C 1.46909 * 109.46898 * 119.99584 * 2 1 3 6 6 C 1.53000 * 109.47139 * 65.42847 * 5 2 1 7 7 H 1.09000 * 109.46994 * 314.52622 * 6 5 2 8 8 C 1.50691 * 109.47076 * 74.52755 * 6 5 2 9 9 H 1.08000 * 120.00085 * 244.73322 * 8 6 5 10 10 C 1.37883 * 119.99949 * 64.73324 * 8 6 5 11 11 N 1.31520 * 119.99890 * 192.10366 * 10 8 6 12 12 Si 1.86793 * 119.99882 * 12.10512 * 10 8 6 13 13 H 1.48505 * 109.47211 * 84.60238 * 12 10 8 14 14 H 1.48509 * 109.47174 * 204.60106 * 12 10 8 15 15 H 1.48495 * 109.47593 * 324.59993 * 12 10 8 16 16 O 1.42899 * 109.46952 * 194.52829 * 6 5 2 17 17 C 1.35831 * 117.00097 * 157.46306 * 16 6 5 18 18 C 1.39314 * 119.76361 * 177.13789 * 17 16 6 19 19 C 1.36488 * 120.45675 * 180.02562 * 18 17 16 20 20 C 1.39774 * 119.86169 * 359.97438 * 19 18 17 21 21 C 1.46489 * 133.65051 * 180.02562 * 20 19 18 22 22 N 1.29790 * 107.43766 * 180.02562 * 21 20 19 23 23 O 1.41348 * 109.74259 * 0.02562 * 22 21 20 24 24 C 1.34851 * 109.32018 * 359.97438 * 23 22 21 25 25 C 1.38353 * 119.75818 * 357.16666 * 17 16 6 26 26 H 1.08993 * 109.47293 * 303.24297 * 1 2 3 27 27 H 1.09003 * 109.47200 * 63.24581 * 1 2 3 28 28 H 1.08996 * 109.47063 * 183.24148 * 1 2 3 29 29 H 1.09003 * 109.47103 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46571 * 299.99364 * 3 2 1 31 31 H 1.09000 * 109.47436 * 59.99288 * 3 2 1 32 32 H 1.09002 * 109.47598 * 309.52323 * 4 2 1 33 33 H 1.09003 * 109.46646 * 69.51900 * 4 2 1 34 34 H 1.08994 * 109.47343 * 189.51483 * 4 2 1 35 35 H 1.09006 * 109.46834 * 305.42825 * 5 2 1 36 36 H 1.08999 * 109.47133 * 185.42951 * 5 2 1 37 37 H 0.96991 * 119.99927 * 179.97438 * 11 10 8 38 38 H 1.08003 * 119.77140 * 0.02562 * 18 17 16 39 39 H 1.07990 * 120.06850 * 180.02562 * 19 18 17 40 40 H 1.08001 * 126.28494 * 359.77366 * 21 20 19 41 41 H 1.07995 * 120.12317 * 0.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1993 5 6 1.9587 -0.6925 1.1996 6 6 1.5631 -2.1690 1.1333 7 1 0.5203 -2.2523 0.8270 8 6 2.4387 -2.8791 0.1334 9 1 2.0048 -3.2993 -0.7620 10 6 3.7938 -2.9926 0.3616 11 7 4.5919 -3.3935 -0.6039 12 14 4.4959 -2.5769 2.0418 13 1 4.3828 -3.7601 2.9321 14 1 5.9250 -2.1981 1.9012 15 1 3.7385 -1.4421 2.6280 16 8 1.7304 -2.7651 2.4212 17 6 1.0131 -3.8896 2.6781 18 6 1.1768 -4.5519 3.8927 19 6 0.4636 -5.6832 4.1655 20 6 -0.4381 -6.1820 3.2212 21 6 -1.3369 -7.3385 3.1937 22 7 -1.9545 -7.3240 2.0522 23 8 -1.5245 -6.2135 1.2908 24 6 -0.6070 -5.5189 1.9937 25 6 0.1255 -4.3692 1.7314 26 1 -0.3633 0.5633 0.8594 27 1 -0.3634 0.4626 -0.9177 28 1 -0.3633 -1.0260 0.0581 29 1 3.0487 1.3850 0.0005 30 1 1.5954 1.8987 -0.8901 31 1 1.5953 1.8989 0.8899 32 1 1.4633 -1.6595 -1.2883 33 1 1.7408 -0.0902 -2.0812 34 1 3.0354 -0.8421 -1.1184 35 1 1.5180 -0.2377 2.0869 36 1 3.0443 -0.6090 1.2496 37 1 5.5451 -3.4729 -0.4435 38 1 1.8729 -4.1675 4.6236 39 1 0.5952 -6.1914 5.1092 40 1 -1.4598 -8.0713 3.9775 41 1 0.0037 -3.8516 0.7913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226449565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:10 Heat of formation + Delta-G solvation = 152.026238 kcal Electronic energy + Delta-G solvation = -24420.440430 eV Core-core repulsion = 21002.106650 eV Total energy + Delta-G solvation = -3418.333780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.57969 -42.46493 -40.45103 -37.49510 -34.77570 -34.38048 -32.54519 -31.28531 -30.61153 -30.32510 -29.88240 -28.09905 -25.11205 -24.35110 -23.48343 -23.06562 -22.32424 -20.31244 -18.73395 -18.64104 -18.47842 -18.24470 -17.85463 -17.21027 -16.76815 -16.58218 -15.66472 -15.51201 -15.25761 -15.03622 -14.91138 -14.69893 -14.41592 -14.35654 -14.30836 -14.21964 -14.12544 -13.66002 -13.52630 -13.47510 -12.79592 -12.60155 -12.30800 -12.21446 -12.10865 -12.02992 -11.85932 -11.14707 -10.93260 -10.31442 -9.50526 -9.03659 -7.95834 -6.17991 -0.09388 0.09297 0.48335 1.31186 1.65659 1.73604 1.85445 2.03243 2.11622 2.21040 2.24132 2.63028 2.73076 2.79554 3.02230 3.06801 3.20362 3.33777 3.41410 3.47995 3.51744 3.54709 3.60560 3.62040 3.77231 3.81518 3.86315 3.96557 4.12632 4.18012 4.32039 4.44035 4.59679 4.71357 4.73639 4.92225 5.23854 5.29790 5.36166 5.39620 5.64434 6.29103 6.43532 6.58774 6.96971 7.57176 9.09993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.257 5.257 3 C -0.039 4.039 4 C -0.035 4.035 5 C -0.005 4.005 6 C 0.155 3.845 7 H 0.067 0.933 8 C -0.594 4.594 9 H 0.099 0.901 10 C 0.094 3.906 11 N -0.837 5.837 12 Si 0.887 3.113 13 H -0.265 1.265 14 H -0.291 1.291 15 H -0.258 1.258 16 O -0.312 6.312 17 C 0.217 3.783 18 C -0.183 4.183 19 C -0.002 4.002 20 C -0.248 4.248 21 C 0.118 3.882 22 N -0.297 5.297 23 O -0.099 6.099 24 C 0.124 3.876 25 C -0.212 4.212 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.284 0.716 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.209 0.791 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 15.220 1.538 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 N 0.084 4.916 3 C -0.181 4.181 4 C -0.174 4.174 5 C -0.126 4.126 6 C 0.101 3.899 7 H 0.084 0.916 8 C -0.629 4.629 9 H 0.116 0.884 10 C -0.119 4.119 11 N -0.467 5.467 12 Si 0.716 3.284 13 H -0.190 1.190 14 H -0.219 1.219 15 H -0.185 1.185 16 O -0.225 6.225 17 C 0.169 3.831 18 C -0.202 4.202 19 C -0.022 4.022 20 C -0.252 4.252 21 C -0.083 4.083 22 N -0.041 5.041 23 O -0.108 6.108 24 C 0.070 3.930 25 C -0.233 4.233 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.162 0.838 33 H 0.110 0.890 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.225 0.775 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.626 14.736 0.647 16.170 hybrid contribution 1.086 0.146 1.270 1.678 sum -5.540 14.883 1.918 15.996 Atomic orbital electron populations 1.24141 0.77617 1.09165 1.08167 1.45745 1.14413 1.14532 1.16869 1.24051 1.05694 0.80226 1.08116 1.24643 1.07821 1.01701 0.83274 1.24313 1.05259 0.97700 0.85326 1.20783 0.99280 0.87909 0.81974 0.91566 1.21147 0.92404 1.42541 1.06770 0.88363 1.25047 0.96809 0.93168 0.96916 1.69850 1.06010 1.38951 1.31890 0.86861 0.77442 0.80624 0.83494 1.18957 1.21876 1.18463 1.86036 1.61284 1.37382 1.37769 1.18535 0.86759 0.85844 0.91950 1.20137 1.05076 0.97850 0.97152 1.20173 0.91123 0.93262 0.97598 1.20726 1.07038 0.99457 0.97952 1.26021 0.90834 0.95658 0.95767 1.79910 1.18385 1.00535 1.05265 1.89153 1.49875 1.33895 1.37834 1.19912 0.89823 0.92896 0.90400 1.19817 1.02536 0.98303 1.02633 0.86845 0.86428 0.86122 0.86354 0.86431 0.86897 0.83832 0.88974 0.85131 0.87106 0.85119 0.90510 0.84421 0.84225 0.77476 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.62 7.83 60.07 0.47 1.09 16 2 N -0.26 2.76 0.05 -395.61 -0.02 2.74 16 3 C -0.04 0.53 7.99 60.07 0.48 1.01 16 4 C -0.03 0.28 6.67 60.06 0.40 0.68 16 5 C 0.00 0.03 3.06 -3.82 -0.01 0.02 16 6 C 0.15 -0.19 1.48 -27.89 -0.04 -0.23 16 7 H 0.07 -0.24 3.73 -51.93 -0.19 -0.43 16 8 C -0.59 -2.12 5.44 -34.44 -0.19 -2.31 16 9 H 0.10 0.56 7.15 -52.49 -0.38 0.19 16 10 C 0.09 0.66 4.94 -17.81 -0.09 0.58 16 11 N -0.84 -8.71 13.96 55.43 0.77 -7.93 16 12 Si 0.89 5.48 24.31 -169.99 -4.13 1.34 16 13 H -0.26 -2.32 7.11 56.52 0.40 -1.92 16 14 H -0.29 -2.32 7.11 56.52 0.40 -1.92 16 15 H -0.26 -0.63 5.12 56.52 0.29 -0.35 16 16 O -0.31 -0.67 6.32 -19.21 -0.12 -0.79 16 17 C 0.22 0.70 6.56 -39.14 -0.26 0.44 16 18 C -0.18 -0.47 9.91 -39.81 -0.39 -0.86 16 19 C 0.00 0.00 10.05 -39.64 -0.40 -0.40 16 20 C -0.25 -0.84 6.35 -105.13 -0.67 -1.51 16 21 C 0.12 0.28 12.32 -15.09 -0.19 0.09 16 22 N -0.30 -1.68 12.81 31.93 0.41 -1.27 16 23 O -0.10 -0.67 12.07 7.60 0.09 -0.57 16 24 C 0.12 0.62 7.48 -38.50 -0.29 0.34 16 25 C -0.21 -0.73 8.79 -39.32 -0.35 -1.08 16 26 H 0.11 -1.60 8.12 -51.93 -0.42 -2.02 16 27 H 0.12 -1.70 8.13 -51.93 -0.42 -2.13 16 28 H 0.12 -1.35 5.91 -51.93 -0.31 -1.65 16 29 H 0.12 -1.51 8.11 -51.93 -0.42 -1.93 16 30 H 0.12 -1.78 8.07 -51.93 -0.42 -2.20 16 31 H 0.11 -1.66 8.13 -51.93 -0.42 -2.08 16 32 H 0.14 -0.81 5.20 -51.93 -0.27 -1.08 16 33 H 0.09 -1.00 8.00 -51.93 -0.42 -1.42 16 34 H 0.13 -0.62 7.13 -51.93 -0.37 -0.99 16 35 H 0.11 -0.92 8.10 -51.93 -0.42 -1.34 16 36 H 0.13 -0.56 4.75 -51.93 -0.25 -0.80 16 37 H 0.28 2.97 8.31 -40.82 -0.34 2.64 16 38 H 0.14 0.17 8.06 -52.48 -0.42 -0.25 16 39 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 40 H 0.21 -0.49 8.06 -52.49 -0.42 -0.91 16 41 H 0.15 0.25 5.69 -52.49 -0.30 -0.04 16 LS Contribution 316.40 15.07 4.77 4.77 Total: 0.00 -19.88 316.40 -5.26 -25.14 By element: Atomic # 1 Polarization: -15.76 SS G_CDS: -5.52 Total: -21.28 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.51 Total: -2.15 kcal Atomic # 7 Polarization: -7.63 SS G_CDS: 1.16 Total: -6.47 kcal Atomic # 8 Polarization: -1.34 SS G_CDS: -0.03 Total: -1.37 kcal Atomic # 14 Polarization: 5.48 SS G_CDS: -4.13 Total: 1.34 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -19.88 -5.26 -25.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226449565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.170 kcal (2) G-P(sol) polarization free energy of solvation -19.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds