Wall clock time and date at job start Tue Mar 31 2020 07:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 109.47110 * 2 1 4 4 C 1.46902 * 109.47277 * 239.99889 * 2 1 3 5 5 C 1.46906 * 109.47264 * 119.99985 * 2 1 3 6 6 C 1.52998 * 109.46904 * 58.65293 * 5 2 1 7 7 H 1.08993 * 109.47557 * 314.80341 * 6 5 2 8 8 C 1.50700 * 109.46897 * 74.80917 * 6 5 2 9 9 H 1.08003 * 119.99836 * 242.55780 * 8 6 5 10 10 C 1.37877 * 120.00381 * 62.56108 * 8 6 5 11 11 N 1.31513 * 119.99551 * 8.79984 * 10 8 6 12 12 Si 1.86800 * 119.99924 * 188.79910 * 10 8 6 13 13 H 1.48499 * 109.46633 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47083 * 299.99659 * 12 10 8 15 15 H 1.48489 * 109.47087 * 60.00156 * 12 10 8 16 16 O 1.42904 * 109.46686 * 194.80578 * 6 5 2 17 17 C 1.35799 * 116.99653 * 145.36045 * 16 6 5 18 18 C 1.39116 * 120.16932 * 94.85969 * 17 16 6 19 19 O 1.36007 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.38480 * 119.99536 * 180.02562 * 18 17 16 21 21 C 1.38510 * 120.33973 * 359.97438 * 20 18 17 22 22 C 1.37773 * 120.33807 * 0.02562 * 21 20 18 23 23 C 1.39823 * 119.99620 * 359.72495 * 22 21 20 24 24 C 1.43199 * 120.16614 * 180.29770 * 23 22 21 25 25 N 4.55884 * 59.79631 * 97.61900 * 2 1 3 26 26 H 1.08991 * 109.47231 * 291.58185 * 1 2 3 27 27 H 1.08996 * 109.47094 * 51.58719 * 1 2 3 28 28 H 1.09006 * 109.46738 * 171.58275 * 1 2 3 29 29 H 1.08997 * 109.47104 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46448 * 299.99976 * 3 2 1 31 31 H 1.08997 * 109.46795 * 60.00016 * 3 2 1 32 32 H 1.08991 * 109.47145 * 308.08133 * 4 2 1 33 33 H 1.08998 * 109.46736 * 68.08406 * 4 2 1 34 34 H 1.08997 * 109.46930 * 188.08393 * 4 2 1 35 35 H 1.09004 * 109.46777 * 298.65381 * 5 2 1 36 36 H 1.08997 * 109.46976 * 178.65815 * 5 2 1 37 37 H 0.96998 * 120.00506 * 354.68654 * 11 10 8 38 38 H 0.96691 * 113.99877 * 89.99770 * 19 18 17 39 39 H 1.08001 * 119.82482 * 179.97438 * 20 18 17 40 40 H 1.07997 * 119.82951 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.00266 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6925 1.1995 6 6 1.4212 -2.1249 1.2165 7 1 0.3606 -2.1180 0.9657 8 6 2.1710 -2.9547 0.2064 9 1 1.6453 -3.3937 -0.6287 10 6 3.5279 -3.1536 0.3483 11 7 4.1372 -2.7695 1.4487 12 14 4.5008 -3.9686 -1.0223 13 1 5.9288 -4.0645 -0.6261 14 1 3.9626 -5.3304 -1.2692 15 1 4.3847 -3.1583 -2.2611 16 8 1.5990 -2.6848 2.5192 17 6 0.6416 -3.5423 2.9575 18 6 0.8037 -4.9143 2.7934 19 8 1.9234 -5.3998 2.1932 20 6 -0.1752 -5.7854 3.2413 21 6 -1.3180 -5.2986 3.8540 22 6 -1.4928 -3.9425 4.0236 23 6 -0.5110 -3.0505 3.5815 24 6 -0.6860 -1.6407 3.7616 25 7 -0.8244 -0.5224 3.9052 26 1 -0.3633 0.3780 0.9555 27 1 -0.3633 0.6385 -0.8052 28 1 -0.3633 -1.0167 -0.1504 29 1 3.0487 1.3850 0.0005 30 1 1.5953 1.8988 -0.8900 31 1 1.5954 1.8988 0.8900 32 1 1.4823 -1.6699 -1.2746 33 1 1.7182 -0.1020 -2.0835 34 1 3.0391 -0.8193 -1.1301 35 1 1.6152 -0.1649 2.0893 36 1 3.0484 -0.7134 1.1875 37 1 3.6487 -2.2778 2.1273 38 1 2.6482 -5.5867 2.8054 39 1 -0.0467 -6.8500 3.1121 40 1 -2.0759 -5.9854 4.2005 41 1 -2.3858 -3.5688 4.5025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226520415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:30 Heat of formation + Delta-G solvation = 91.415812 kcal Electronic energy + Delta-G solvation = -24974.172885 eV Core-core repulsion = 21553.210840 eV Total energy + Delta-G solvation = -3420.962045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.43722 -41.09949 -38.43272 -37.93095 -36.79290 -34.95715 -31.94770 -31.43797 -30.49766 -30.28140 -29.89199 -27.66222 -25.20328 -24.58647 -23.52408 -22.60866 -20.34505 -19.36648 -19.13243 -18.53577 -18.31847 -17.93406 -17.77340 -17.03867 -16.01580 -15.95304 -15.50030 -15.09297 -15.07573 -14.82866 -14.58163 -14.48104 -14.37943 -14.21808 -14.13649 -14.09811 -13.96877 -13.92643 -13.49334 -13.12016 -13.01944 -12.86011 -12.66018 -12.07462 -11.93277 -11.78784 -11.40184 -11.02972 -10.21144 -9.98027 -9.74007 -9.35656 -8.05982 -6.00238 -0.28500 0.13570 0.33222 1.64018 1.90993 2.06938 2.09615 2.27024 2.28987 2.30959 2.39137 2.65338 2.86814 3.02358 3.07558 3.10405 3.16539 3.35962 3.50458 3.57989 3.59302 3.66643 3.67559 3.71711 3.86700 3.94241 4.01662 4.06717 4.11077 4.22027 4.36071 4.57652 4.62169 4.74649 4.80870 5.15789 5.30762 5.42026 5.62407 5.92113 6.44845 6.50517 6.75602 7.05350 7.16486 7.78933 9.28331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.253 5.253 3 C -0.039 4.039 4 C -0.042 4.042 5 C -0.009 4.009 6 C 0.187 3.813 7 H 0.040 0.960 8 C -0.634 4.634 9 H 0.071 0.929 10 C 0.058 3.942 11 N -0.848 5.848 12 Si 1.048 2.952 13 H -0.275 1.275 14 H -0.276 1.276 15 H -0.283 1.283 16 O -0.329 6.329 17 C 0.146 3.854 18 C 0.107 3.893 19 O -0.463 6.463 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.072 4.072 23 C -0.070 4.070 24 C 0.271 3.729 25 N -0.432 5.432 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.284 0.716 38 H 0.390 0.610 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 7.421 -4.700 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.088 4.912 3 C -0.181 4.181 4 C -0.182 4.182 5 C -0.130 4.130 6 C 0.134 3.866 7 H 0.058 0.942 8 C -0.669 4.669 9 H 0.089 0.911 10 C -0.157 4.157 11 N -0.481 5.481 12 Si 0.874 3.126 13 H -0.200 1.200 14 H -0.202 1.202 15 H -0.209 1.209 16 O -0.246 6.246 17 C 0.098 3.902 18 C 0.061 3.939 19 O -0.272 6.272 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.092 4.092 23 C -0.075 4.075 24 C -0.044 4.044 25 N -0.108 5.108 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.168 0.832 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.246 0.754 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.806 8.744 -5.277 11.748 hybrid contribution -1.306 -0.148 0.949 1.621 sum -7.112 8.596 -4.327 11.966 Atomic orbital electron populations 1.24091 0.77959 1.08966 1.07887 1.45687 1.14246 1.14402 1.16824 1.24041 1.05642 0.80382 1.08006 1.24590 1.06770 1.03020 0.83823 1.24040 1.05953 0.98313 0.84736 1.20478 0.96105 0.88095 0.81891 0.94222 1.22168 0.95815 1.38599 1.10300 0.91098 1.25782 0.95300 0.94997 0.99582 1.70875 1.42133 1.29534 1.05524 0.83740 0.77352 0.77658 0.73818 1.19988 1.20165 1.20925 1.86088 1.43719 1.59477 1.35332 1.19081 0.87391 0.89512 0.94251 1.18640 0.90352 0.89553 0.95353 1.84978 1.22461 1.84611 1.35159 1.21741 0.94038 1.00765 0.96164 1.20929 0.98015 0.94826 1.00093 1.21030 0.97375 0.92741 0.98086 1.16434 0.97236 0.85306 1.08503 1.25536 0.92975 0.92592 0.93275 1.81191 1.08563 1.11806 1.09203 0.87259 0.86615 0.86051 0.86304 0.86575 0.87010 0.83153 0.88755 0.86268 0.88294 0.84570 0.90129 0.75389 0.84400 0.84495 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.44 7.57 60.07 0.45 0.89 16 2 N -0.25 2.07 0.05 -395.62 -0.02 2.05 16 3 C -0.04 0.43 7.99 60.07 0.48 0.91 16 4 C -0.04 0.30 6.80 60.07 0.41 0.71 16 5 C -0.01 0.03 3.52 -3.82 -0.01 0.01 16 6 C 0.19 0.19 1.96 -27.88 -0.05 0.14 16 7 H 0.04 -0.01 5.46 -51.93 -0.28 -0.29 16 8 C -0.63 -2.40 5.36 -34.44 -0.18 -2.59 16 9 H 0.07 0.32 7.13 -52.48 -0.37 -0.05 16 10 C 0.06 0.37 4.74 -17.82 -0.08 0.28 16 11 N -0.85 -7.29 12.80 55.43 0.71 -6.58 16 12 Si 1.05 6.52 29.91 -169.99 -5.08 1.43 16 13 H -0.28 -2.33 7.11 56.52 0.40 -1.92 16 14 H -0.28 -2.10 7.11 56.52 0.40 -1.69 16 15 H -0.28 -1.24 7.11 56.52 0.40 -0.84 16 16 O -0.33 -1.35 7.05 -33.66 -0.24 -1.59 16 17 C 0.15 0.47 5.57 -38.60 -0.22 0.26 16 18 C 0.11 0.34 6.71 -39.17 -0.26 0.07 16 19 O -0.46 -2.20 12.99 -34.31 -0.45 -2.65 16 20 C -0.11 -0.08 9.97 -39.39 -0.39 -0.47 16 21 C -0.12 0.09 10.02 -39.65 -0.40 -0.31 16 22 C -0.07 0.02 9.75 -39.16 -0.38 -0.36 16 23 C -0.07 -0.11 5.75 -106.72 -0.61 -0.72 16 24 C 0.27 0.55 14.75 -22.48 -0.33 0.22 16 25 N -0.43 -1.24 18.54 41.84 0.78 -0.47 16 26 H 0.11 -0.91 8.04 -51.93 -0.42 -1.33 16 27 H 0.12 -1.40 8.02 -51.93 -0.42 -1.82 16 28 H 0.12 -0.96 6.08 -51.93 -0.32 -1.28 16 29 H 0.12 -1.26 8.14 -51.93 -0.42 -1.69 16 30 H 0.12 -1.53 8.02 -51.93 -0.42 -1.95 16 31 H 0.11 -1.25 8.14 -51.93 -0.42 -1.67 16 32 H 0.15 -0.74 4.90 -51.93 -0.25 -0.99 16 33 H 0.09 -0.98 8.03 -51.93 -0.42 -1.40 16 34 H 0.12 -0.62 7.62 -51.93 -0.40 -1.01 16 35 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 36 H 0.14 -0.10 5.96 -51.93 -0.31 -0.41 16 37 H 0.28 2.30 5.03 -40.82 -0.21 2.09 16 38 H 0.39 0.91 9.06 45.56 0.41 1.32 16 39 H 0.14 -0.10 8.06 -52.49 -0.42 -0.52 16 40 H 0.14 -0.43 8.06 -52.49 -0.42 -0.85 16 41 H 0.13 -0.30 8.06 -52.48 -0.42 -0.72 16 LS Contribution 335.04 15.07 5.05 5.05 Total: 0.00 -15.88 335.04 -5.56 -21.44 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: -4.72 Total: -17.73 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.59 Total: -0.96 kcal Atomic # 7 Polarization: -6.46 SS G_CDS: 1.47 Total: -4.99 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.68 Total: -4.24 kcal Atomic # 14 Polarization: 6.52 SS G_CDS: -5.08 Total: 1.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -15.88 -5.56 -21.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226520415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.857 kcal (2) G-P(sol) polarization free energy of solvation -15.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds