Wall clock time and date at job start Tue Mar 31 2020 07:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 109.47110 * 2 1 4 4 C 1.46902 * 109.47277 * 239.99889 * 2 1 3 5 5 C 1.46906 * 109.47264 * 119.99985 * 2 1 3 6 6 C 1.52998 * 109.46904 * 58.65293 * 5 2 1 7 7 H 1.08993 * 109.47557 * 314.80341 * 6 5 2 8 8 C 1.50700 * 109.46897 * 74.80917 * 6 5 2 9 9 H 1.08003 * 119.99836 * 242.55780 * 8 6 5 10 10 C 1.37877 * 120.00381 * 62.56108 * 8 6 5 11 11 N 1.31513 * 119.99551 * 8.79984 * 10 8 6 12 12 Si 1.86800 * 119.99924 * 188.79910 * 10 8 6 13 13 H 1.48499 * 109.46633 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47083 * 299.99659 * 12 10 8 15 15 H 1.48489 * 109.47087 * 60.00156 * 12 10 8 16 16 O 1.42904 * 109.46686 * 194.80578 * 6 5 2 17 17 C 1.35799 * 116.99653 * 145.36045 * 16 6 5 18 18 C 1.39116 * 120.16932 * 94.85969 * 17 16 6 19 19 O 1.36007 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.38480 * 119.99536 * 180.02562 * 18 17 16 21 21 C 1.38510 * 120.33973 * 359.97438 * 20 18 17 22 22 C 1.37773 * 120.33807 * 0.02562 * 21 20 18 23 23 C 1.39823 * 119.99620 * 359.72495 * 22 21 20 24 24 C 1.43199 * 120.16614 * 180.29770 * 23 22 21 25 25 N 4.55884 * 59.79631 * 97.61900 * 2 1 3 26 26 H 1.08991 * 109.47231 * 291.58185 * 1 2 3 27 27 H 1.08996 * 109.47094 * 51.58719 * 1 2 3 28 28 H 1.09006 * 109.46738 * 171.58275 * 1 2 3 29 29 H 1.08997 * 109.47104 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46448 * 299.99976 * 3 2 1 31 31 H 1.08997 * 109.46795 * 60.00016 * 3 2 1 32 32 H 1.08991 * 109.47145 * 308.08133 * 4 2 1 33 33 H 1.08998 * 109.46736 * 68.08406 * 4 2 1 34 34 H 1.08997 * 109.46930 * 188.08393 * 4 2 1 35 35 H 1.09004 * 109.46777 * 298.65381 * 5 2 1 36 36 H 1.08997 * 109.46976 * 178.65815 * 5 2 1 37 37 H 0.96998 * 120.00506 * 354.68654 * 11 10 8 38 38 H 0.96691 * 113.99877 * 89.99770 * 19 18 17 39 39 H 1.08001 * 119.82482 * 179.97438 * 20 18 17 40 40 H 1.07997 * 119.82951 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.00266 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6925 1.1995 6 6 1.4212 -2.1249 1.2165 7 1 0.3606 -2.1180 0.9657 8 6 2.1710 -2.9547 0.2064 9 1 1.6453 -3.3937 -0.6287 10 6 3.5279 -3.1536 0.3483 11 7 4.1372 -2.7695 1.4487 12 14 4.5008 -3.9686 -1.0223 13 1 5.9288 -4.0645 -0.6261 14 1 3.9626 -5.3304 -1.2692 15 1 4.3847 -3.1583 -2.2611 16 8 1.5990 -2.6848 2.5192 17 6 0.6416 -3.5423 2.9575 18 6 0.8037 -4.9143 2.7934 19 8 1.9234 -5.3998 2.1932 20 6 -0.1752 -5.7854 3.2413 21 6 -1.3180 -5.2986 3.8540 22 6 -1.4928 -3.9425 4.0236 23 6 -0.5110 -3.0505 3.5815 24 6 -0.6860 -1.6407 3.7616 25 7 -0.8244 -0.5224 3.9052 26 1 -0.3633 0.3780 0.9555 27 1 -0.3633 0.6385 -0.8052 28 1 -0.3633 -1.0167 -0.1504 29 1 3.0487 1.3850 0.0005 30 1 1.5953 1.8988 -0.8900 31 1 1.5954 1.8988 0.8900 32 1 1.4823 -1.6699 -1.2746 33 1 1.7182 -0.1020 -2.0835 34 1 3.0391 -0.8193 -1.1301 35 1 1.6152 -0.1649 2.0893 36 1 3.0484 -0.7134 1.1875 37 1 3.6487 -2.2778 2.1273 38 1 2.6482 -5.5867 2.8054 39 1 -0.0467 -6.8500 3.1121 40 1 -2.0759 -5.9854 4.2005 41 1 -2.3858 -3.5688 4.5025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226520415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:27 Heat of formation + Delta-G solvation = 87.855701 kcal Electronic energy + Delta-G solvation = -24974.327263 eV Core-core repulsion = 21553.210840 eV Total energy + Delta-G solvation = -3421.116423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.92996 -41.19328 -38.56314 -38.11683 -36.96740 -35.24008 -32.01762 -31.43206 -30.08117 -29.71040 -29.68802 -27.57362 -25.22420 -24.52818 -23.45785 -22.57460 -20.48732 -19.57077 -19.05609 -18.16932 -17.95762 -17.78401 -17.54431 -17.14063 -16.06653 -15.95707 -15.73652 -15.25529 -14.97404 -14.85377 -14.57514 -14.38445 -14.20515 -14.05618 -13.87759 -13.49879 -13.44830 -13.36893 -13.16090 -13.05171 -13.00868 -12.78968 -12.75903 -12.51722 -12.14258 -12.05865 -11.86668 -11.28629 -10.63298 -10.24916 -9.86440 -9.47865 -8.52807 -6.40571 -0.36322 0.15639 0.81514 1.49203 1.52779 1.70423 1.78622 1.81486 2.35065 2.52523 2.69311 2.80649 2.89790 2.93835 3.07096 3.30715 3.48748 3.67813 3.85969 4.03865 4.06949 4.07283 4.13588 4.18739 4.22954 4.31817 4.37518 4.47920 4.53759 4.58461 4.59525 4.65394 4.73371 4.76569 5.10758 5.14667 5.27606 5.36576 5.63414 5.66942 6.10563 6.31566 6.53117 6.66074 6.96128 7.40153 8.83330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.242 5.242 3 C -0.043 4.043 4 C -0.042 4.042 5 C 0.009 3.991 6 C 0.184 3.816 7 H 0.052 0.948 8 C -0.610 4.610 9 H 0.061 0.939 10 C 0.044 3.956 11 N -0.894 5.894 12 Si 1.065 2.935 13 H -0.310 1.310 14 H -0.298 1.298 15 H -0.250 1.250 16 O -0.349 6.349 17 C 0.126 3.874 18 C 0.079 3.921 19 O -0.485 6.485 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.063 4.063 23 C -0.075 4.075 24 C 0.280 3.720 25 N -0.448 5.448 26 H 0.103 0.897 27 H 0.156 0.844 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.281 0.719 38 H 0.392 0.608 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 8.726 -5.209 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 N 0.099 4.901 3 C -0.184 4.184 4 C -0.182 4.182 5 C -0.115 4.115 6 C 0.131 3.869 7 H 0.069 0.931 8 C -0.646 4.646 9 H 0.079 0.921 10 C -0.166 4.166 11 N -0.530 5.530 12 Si 0.894 3.106 13 H -0.237 1.237 14 H -0.225 1.225 15 H -0.174 1.174 16 O -0.266 6.266 17 C 0.078 3.922 18 C 0.033 3.967 19 O -0.295 6.295 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.083 4.083 23 C -0.080 4.080 24 C -0.034 4.034 25 N -0.124 5.124 26 H 0.121 0.879 27 H 0.174 0.826 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.170 0.830 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.249 0.751 39 H 0.168 0.832 40 H 0.187 0.813 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.462 10.066 -5.822 14.382 hybrid contribution -0.598 -0.623 1.114 1.410 sum -9.060 9.443 -4.708 13.908 Atomic orbital electron populations 1.24215 0.76655 1.08927 1.09170 1.45543 1.15013 1.15205 1.14309 1.24278 1.05581 0.78454 1.10046 1.24489 1.05162 1.02988 0.85567 1.23563 1.04466 0.96182 0.87256 1.20564 0.96571 0.89438 0.80313 0.93061 1.22156 0.94885 1.37303 1.10296 0.92065 1.25802 0.96294 0.95190 0.99266 1.70879 1.42675 1.32811 1.06674 0.83557 0.74794 0.76902 0.75392 1.23731 1.22496 1.17417 1.86035 1.44728 1.59862 1.35996 1.19290 0.87994 0.89606 0.95342 1.18933 0.90562 0.90129 0.97029 1.84942 1.23371 1.84882 1.36330 1.21940 0.93795 1.01150 0.95526 1.21294 0.97769 0.95163 0.98603 1.21386 0.97400 0.92689 0.96825 1.16489 0.97271 0.85372 1.08833 1.25574 0.92454 0.92586 0.92776 1.81190 1.09201 1.12147 1.09863 0.87873 0.82585 0.87578 0.86829 0.83028 0.86513 0.85647 0.84274 0.88445 0.88148 0.86857 0.90475 0.75097 0.83162 0.81287 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.96 7.57 127.69 0.97 1.92 16 2 N -0.24 4.07 0.05 ******* -0.07 4.00 16 3 C -0.04 1.01 7.99 127.69 1.02 2.03 16 4 C -0.04 0.61 6.80 127.69 0.87 1.48 16 5 C 0.01 -0.04 3.52 86.30 0.30 0.26 16 6 C 0.18 0.70 1.96 29.85 0.06 0.76 16 7 H 0.05 0.04 5.46 -2.39 -0.01 0.03 16 8 C -0.61 -6.00 5.36 25.60 0.14 -5.86 16 9 H 0.06 0.69 7.13 -2.91 -0.02 0.67 16 10 C 0.04 0.69 4.74 84.65 0.40 1.09 16 11 N -0.89 -18.50 12.80 21.45 0.27 -18.23 16 12 Si 1.07 15.98 29.91 68.60 2.05 18.03 16 13 H -0.31 -6.44 7.11 99.48 0.71 -5.74 16 14 H -0.30 -5.42 7.11 99.48 0.71 -4.72 16 15 H -0.25 -2.26 7.11 99.48 0.71 -1.55 16 16 O -0.35 -3.64 7.05 -77.39 -0.55 -4.18 16 17 C 0.13 0.98 5.57 22.91 0.13 1.11 16 18 C 0.08 0.62 6.71 22.54 0.15 0.77 16 19 O -0.49 -5.99 12.99 -79.72 -1.04 -7.02 16 20 C -0.10 -0.13 9.97 22.39 0.22 0.09 16 21 C -0.11 0.37 10.02 22.22 0.22 0.59 16 22 C -0.06 0.14 9.75 22.54 0.22 0.36 16 23 C -0.08 -0.24 5.75 -21.22 -0.12 -0.36 16 24 C 0.28 1.13 14.75 88.33 1.30 2.43 16 25 N -0.45 -2.54 18.54 19.00 0.35 -2.19 16 26 H 0.10 -1.82 8.04 -2.39 -0.02 -1.83 16 27 H 0.16 -4.30 8.02 -2.39 -0.02 -4.32 16 28 H 0.11 -1.71 6.08 -2.38 -0.01 -1.73 16 29 H 0.11 -2.44 8.14 -2.39 -0.02 -2.46 16 30 H 0.15 -4.53 8.02 -2.39 -0.02 -4.55 16 31 H 0.12 -2.75 8.14 -2.39 -0.02 -2.77 16 32 H 0.13 -1.16 4.90 -2.39 -0.01 -1.17 16 33 H 0.14 -3.26 8.03 -2.39 -0.02 -3.28 16 34 H 0.10 -0.92 7.62 -2.39 -0.02 -0.93 16 35 H 0.10 -0.48 8.10 -2.39 -0.02 -0.50 16 36 H 0.11 0.12 5.96 -2.39 -0.01 0.11 16 37 H 0.28 5.55 5.03 -92.71 -0.47 5.09 16 38 H 0.39 3.27 9.06 -74.06 -0.67 2.59 16 39 H 0.15 -0.26 8.06 -2.91 -0.02 -0.29 16 40 H 0.17 -1.63 8.06 -2.91 -0.02 -1.65 16 41 H 0.16 -1.16 8.06 -2.91 -0.02 -1.18 16 Total: 0.00 -40.69 335.04 7.60 -33.10 By element: Atomic # 1 Polarization: -30.87 SS G_CDS: 0.69 Total: -30.18 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.88 Total: 6.68 kcal Atomic # 7 Polarization: -16.98 SS G_CDS: 0.56 Total: -16.42 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.58 Total: -11.20 kcal Atomic # 14 Polarization: 15.98 SS G_CDS: 2.05 Total: 18.03 kcal Total: -40.69 7.60 -33.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226520415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.951 kcal (2) G-P(sol) polarization free energy of solvation -40.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds