Wall clock time and date at job start Tue Mar 31 2020 07:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 109.47076 * 2 1 4 4 C 1.46899 * 109.47169 * 239.99755 * 2 1 3 5 5 C 1.46901 * 109.47342 * 119.99689 * 2 1 3 6 6 C 1.52999 * 109.46819 * 63.02066 * 5 2 1 7 7 H 1.08993 * 109.47692 * 312.97492 * 6 5 2 8 8 C 1.50702 * 109.47045 * 72.97440 * 6 5 2 9 9 H 1.08000 * 120.00306 * 243.02829 * 8 6 5 10 10 C 1.37878 * 120.00230 * 63.03105 * 8 6 5 11 11 N 1.31509 * 120.00140 * 193.09824 * 10 8 6 12 12 Si 1.86801 * 119.99723 * 13.09424 * 10 8 6 13 13 H 1.48497 * 109.47191 * 86.96424 * 12 10 8 14 14 H 1.48507 * 109.47135 * 206.96531 * 12 10 8 15 15 H 1.48507 * 109.47273 * 326.96255 * 12 10 8 16 16 O 1.42899 * 109.47420 * 192.97209 * 6 5 2 17 17 C 1.35180 * 117.00461 * 150.00296 * 16 6 5 18 18 N 1.30624 * 124.92945 * 359.69321 * 17 16 6 19 19 C 1.36152 * 108.71439 * 179.89852 * 18 17 16 20 20 C 1.39547 * 133.70486 * 180.12750 * 19 18 17 21 21 C 1.37753 * 119.73658 * 180.26097 * 20 19 18 22 22 C 1.38657 * 120.39148 * 359.97438 * 21 20 19 23 23 C 1.38008 * 120.46323 * 0.02562 * 22 21 20 24 24 C 1.38560 * 119.89244 * 359.97438 * 23 22 21 25 25 O 1.34380 * 124.93534 * 180.02562 * 17 16 6 26 26 H 1.08997 * 109.47070 * 302.45354 * 1 2 3 27 27 H 1.08997 * 109.46960 * 62.45445 * 1 2 3 28 28 H 1.09001 * 109.47300 * 182.45209 * 1 2 3 29 29 H 1.09005 * 109.47061 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47024 * 299.99807 * 3 2 1 31 31 H 1.08997 * 109.47384 * 59.99822 * 3 2 1 32 32 H 1.08994 * 109.47099 * 308.60840 * 4 2 1 33 33 H 1.08996 * 109.46941 * 68.61409 * 4 2 1 34 34 H 1.09004 * 109.46745 * 188.60884 * 4 2 1 35 35 H 1.09004 * 109.47000 * 303.03153 * 5 2 1 36 36 H 1.08993 * 109.47854 * 183.02437 * 5 2 1 37 37 H 0.97001 * 119.99781 * 179.97438 * 11 10 8 38 38 H 1.08007 * 120.12982 * 0.23539 * 20 19 18 39 39 H 1.07988 * 119.80537 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.76916 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.05101 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.5117 -2.1552 1.1621 7 1 0.4538 -2.2054 0.9045 8 6 2.3163 -2.9000 0.1282 9 1 1.8240 -3.3343 -0.7294 10 6 3.6811 -3.0273 0.2771 11 7 4.4167 -3.4424 -0.7309 12 14 4.4853 -2.6099 1.9107 13 1 4.4629 -3.8042 2.7929 14 1 5.8915 -2.1927 1.6779 15 1 3.7410 -1.5009 2.5598 16 8 1.7182 -2.7494 2.4451 17 6 0.8756 -3.7437 2.8039 18 7 -0.1080 -4.1916 2.0703 19 6 -0.7378 -5.1911 2.7472 20 6 -1.8264 -6.0148 2.4575 21 6 -2.2363 -6.9542 3.3778 22 6 -1.5735 -7.0859 4.5886 23 6 -0.4955 -6.2778 4.8877 24 6 -0.0701 -5.3277 3.9733 25 8 0.9243 -4.4106 3.9695 26 1 -0.3633 0.5514 0.8671 27 1 -0.3633 0.4752 -0.9112 28 1 -0.3634 -1.0267 0.0440 29 1 3.0487 1.3850 -0.0005 30 1 1.5953 1.8988 -0.8900 31 1 1.5953 1.8988 0.8899 32 1 1.4752 -1.6661 -1.2796 33 1 1.7265 -0.0976 -2.0827 34 1 3.0378 -0.8277 -1.1257 35 1 1.5517 -0.2109 2.0886 36 1 3.0473 -0.6458 1.2271 37 1 5.3770 -3.5315 -0.6262 38 1 -2.3457 -5.9158 1.5157 39 1 -3.0788 -7.5919 3.1550 40 1 -1.9032 -7.8261 5.3026 41 1 0.0161 -6.3864 5.8326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226905478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:56 Heat of formation + Delta-G solvation = 123.582212 kcal Electronic energy + Delta-G solvation = -24320.475902 eV Core-core repulsion = 20900.908696 eV Total energy + Delta-G solvation = -3419.567205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.26383 -42.90252 -40.02139 -38.80597 -35.61857 -35.25918 -32.58643 -31.62731 -30.17095 -29.65544 -29.60337 -27.89174 -25.35380 -24.19899 -23.94261 -23.14125 -22.47818 -20.56254 -19.28167 -18.70255 -18.41829 -18.07646 -17.92700 -17.66755 -17.25431 -16.86264 -15.94707 -15.58079 -15.37569 -15.01505 -14.86636 -14.71389 -14.44773 -13.98986 -13.71898 -13.53545 -13.35147 -13.31948 -13.18403 -13.09161 -13.06048 -12.83768 -12.75402 -12.49767 -12.31918 -12.23412 -11.56647 -11.45893 -11.21422 -10.97187 -9.81610 -9.20379 -8.66747 -6.76997 -0.22862 0.18699 0.22692 0.96254 1.09124 1.34716 1.39759 1.47564 2.05259 2.43268 2.66780 2.68550 2.87098 2.97330 3.04662 3.38326 3.54020 3.78067 3.84766 4.07022 4.11215 4.18986 4.23581 4.26469 4.31133 4.36321 4.42942 4.48099 4.52201 4.59780 4.65650 4.70135 4.80696 4.84036 4.94953 5.00915 5.09431 5.27821 5.33533 5.40691 5.66542 5.79644 5.97390 6.38172 6.55739 6.92934 8.41383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.242 5.242 3 C -0.045 4.045 4 C -0.035 4.035 5 C 0.004 3.996 6 C 0.156 3.844 7 H 0.105 0.895 8 C -0.537 4.537 9 H 0.075 0.925 10 C 0.066 3.934 11 N -0.883 5.883 12 Si 0.895 3.105 13 H -0.318 1.318 14 H -0.299 1.299 15 H -0.190 1.190 16 O -0.291 6.291 17 C 0.439 3.561 18 N -0.524 5.524 19 C 0.023 3.977 20 C -0.085 4.085 21 C -0.103 4.103 22 C -0.097 4.097 23 C -0.094 4.094 24 C -0.037 4.037 25 O -0.233 6.233 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.275 0.725 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 15.335 -0.211 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 N 0.099 4.901 3 C -0.184 4.184 4 C -0.176 4.176 5 C -0.118 4.118 6 C 0.104 3.896 7 H 0.122 0.878 8 C -0.573 4.573 9 H 0.093 0.907 10 C -0.142 4.142 11 N -0.517 5.517 12 Si 0.725 3.275 13 H -0.247 1.247 14 H -0.227 1.227 15 H -0.114 1.114 16 O -0.199 6.199 17 C 0.193 3.807 18 N -0.275 5.275 19 C -0.088 4.088 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.085 4.085 25 O -0.129 6.129 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.112 0.888 35 H 0.169 0.831 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.193 0.807 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.109 15.729 -0.765 19.272 hybrid contribution 1.737 -1.008 1.281 2.382 sum -9.373 14.721 0.516 17.459 Atomic orbital electron populations 1.24377 0.75604 1.08633 1.10937 1.45603 1.15755 1.15300 1.13458 1.24345 1.05565 0.77759 1.10778 1.24402 1.05120 1.02236 0.85834 1.23954 1.04722 0.93469 0.89656 1.21319 1.01534 0.89963 0.76762 0.87762 1.21293 0.91278 1.37871 1.06882 0.90679 1.25438 0.98095 0.93786 0.96841 1.69946 1.07420 1.42741 1.31629 0.86831 0.78180 0.80701 0.81785 1.24732 1.22738 1.11356 1.86104 1.48518 1.43027 1.42231 1.23086 0.88264 0.89091 0.80292 1.71023 1.10625 1.16115 1.29709 1.20053 0.99508 0.97511 0.91702 1.20602 0.93905 0.94388 1.01556 1.21524 1.00636 0.97236 0.92753 1.21468 0.93397 0.98441 0.98150 1.20296 0.98841 0.93471 0.98680 1.20623 0.91292 0.96033 1.00561 1.84354 1.48564 1.43045 1.36911 0.84399 0.83405 0.88308 0.87038 0.83615 0.84533 0.86529 0.84887 0.88758 0.83094 0.86536 0.91542 0.83448 0.81118 0.80736 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.42 7.79 127.69 1.00 2.41 16 2 N -0.24 5.23 0.05 ******* -0.07 5.17 16 3 C -0.04 1.31 8.00 127.69 1.02 2.33 16 4 C -0.03 0.50 6.69 127.69 0.85 1.35 16 5 C 0.00 -0.05 3.07 86.30 0.26 0.21 16 6 C 0.16 0.35 1.87 29.85 0.06 0.40 16 7 H 0.10 -0.10 4.85 -2.39 -0.01 -0.11 16 8 C -0.54 -6.80 6.07 25.60 0.16 -6.64 16 9 H 0.08 1.38 7.22 -2.91 -0.02 1.36 16 10 C 0.07 1.26 4.76 84.66 0.40 1.67 16 11 N -0.88 -22.62 13.96 21.45 0.30 -22.32 16 12 Si 0.89 14.95 24.37 68.60 1.67 16.62 16 13 H -0.32 -8.24 7.11 99.48 0.71 -7.54 16 14 H -0.30 -5.70 7.11 99.48 0.71 -4.99 16 15 H -0.19 -1.15 5.01 99.48 0.50 -0.66 16 16 O -0.29 -3.21 6.42 -62.32 -0.40 -3.61 16 17 C 0.44 6.85 8.97 130.42 1.17 8.02 16 18 N -0.52 -7.72 10.16 -422.74 -4.29 -12.02 16 19 C 0.02 0.30 7.23 39.28 0.28 0.59 16 20 C -0.09 -0.52 10.10 22.47 0.23 -0.29 16 21 C -0.10 -0.04 10.02 22.25 0.22 0.18 16 22 C -0.10 -0.04 10.03 22.32 0.22 0.19 16 23 C -0.09 -0.58 10.06 22.29 0.22 -0.36 16 24 C -0.04 -0.50 7.42 22.84 0.17 -0.33 16 25 O -0.23 -4.11 10.78 9.25 0.10 -4.01 16 26 H 0.14 -4.15 8.13 -2.39 -0.02 -4.17 16 27 H 0.15 -4.61 8.13 -2.39 -0.02 -4.63 16 28 H 0.10 -1.93 5.86 -2.39 -0.01 -1.94 16 29 H 0.11 -3.00 8.13 -2.38 -0.02 -3.02 16 30 H 0.15 -4.93 8.08 -2.39 -0.02 -4.95 16 31 H 0.14 -4.51 8.13 -2.39 -0.02 -4.53 16 32 H 0.12 -0.78 5.00 -2.39 -0.01 -0.80 16 33 H 0.13 -2.95 8.02 -2.39 -0.02 -2.97 16 34 H 0.09 -0.65 7.20 -2.38 -0.02 -0.67 16 35 H 0.15 -2.75 8.13 -2.39 -0.02 -2.77 16 36 H 0.12 -0.92 4.61 -2.39 -0.01 -0.93 16 37 H 0.27 7.12 8.31 -92.71 -0.77 6.35 16 38 H 0.15 0.37 8.06 -2.91 -0.02 0.34 16 39 H 0.17 -1.14 8.06 -2.92 -0.02 -1.17 16 40 H 0.18 -1.20 8.06 -2.91 -0.02 -1.22 16 41 H 0.15 0.33 8.06 -2.91 -0.02 0.31 16 Total: 0.00 -53.53 319.07 4.40 -49.13 By element: Atomic # 1 Polarization: -39.52 SS G_CDS: 0.83 Total: -38.70 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.27 Total: 9.74 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: -4.06 Total: -29.17 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.30 Total: -7.62 kcal Atomic # 14 Polarization: 14.95 SS G_CDS: 1.67 Total: 16.62 kcal Total: -53.53 4.40 -49.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226905478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.708 kcal (2) G-P(sol) polarization free energy of solvation -53.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds