Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47109 * 2 1 4 4 N 1.46908 * 109.47410 * 181.78670 * 3 2 1 5 5 C 1.46901 * 110.99828 * 75.95334 * 4 3 2 6 6 C 1.50696 * 109.47110 * 195.86488 * 5 4 3 7 7 H 1.08001 * 120.00047 * 355.42197 * 6 5 4 8 8 C 1.37879 * 120.00340 * 175.41849 * 6 5 4 9 9 N 1.31517 * 119.99650 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00237 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47243 * 60.00355 * 10 8 6 12 12 H 1.48506 * 109.47149 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47459 * 300.00251 * 10 8 6 14 14 C 1.46895 * 111.00221 * 199.91201 * 4 3 2 15 15 C 1.50695 * 109.47432 * 66.04411 * 14 4 3 16 16 C 1.35134 * 125.69331 * 94.72252 * 15 14 4 17 17 N 1.36809 * 107.17994 * 179.84454 * 16 15 14 18 18 C 1.36607 * 132.53841 * 180.10866 * 17 16 15 19 19 C 1.35135 * 120.57327 * 180.33100 * 18 17 16 20 20 F 1.35097 * 119.87746 * 179.97438 * 19 18 17 21 21 C 1.40612 * 120.24886 * 0.02562 * 19 18 17 22 22 C 1.36011 * 119.68386 * 359.97438 * 21 19 18 23 23 C 1.37014 * 107.02139 * 0.40670 * 17 16 15 24 24 N 1.32611 * 108.03459 * 359.74851 * 23 17 16 25 25 H 1.09001 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46981 * 299.99861 * 1 2 3 27 27 H 1.09002 * 109.46782 * 60.00273 * 1 2 3 28 28 H 1.08999 * 109.47618 * 239.99463 * 2 1 3 29 29 H 1.09002 * 109.46782 * 119.99727 * 2 1 3 30 30 H 1.08998 * 109.47311 * 61.78844 * 3 2 1 31 31 H 1.09000 * 109.47283 * 301.78811 * 3 2 1 32 32 H 1.09004 * 109.46771 * 315.86526 * 5 4 3 33 33 H 1.09001 * 109.46776 * 75.86168 * 5 4 3 34 34 H 0.96998 * 120.00341 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47179 * 186.04937 * 14 4 3 36 36 H 1.09008 * 109.46517 * 306.04195 * 14 4 3 37 37 H 1.07995 * 126.40720 * 359.97438 * 16 15 14 38 38 H 1.07998 * 119.71658 * 0.35271 * 18 17 16 39 39 H 1.08000 * 120.15902 * 180.02562 * 21 19 18 40 40 H 1.08006 * 120.31394 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5084 1.4427 -0.0432 5 6 3.9955 1.1238 -1.3919 6 6 5.4540 0.7512 -1.3242 7 1 5.9867 0.8224 -0.3874 8 6 6.1087 0.3193 -2.4582 9 7 5.4602 0.2330 -3.5991 10 14 7.9168 -0.1419 -2.3744 11 1 8.0995 -1.2552 -1.4089 12 1 8.3812 -0.5703 -3.7184 13 1 8.7075 1.0338 -1.9296 14 6 4.0485 2.7273 0.4216 15 6 3.7329 2.9053 1.8843 16 6 4.5510 2.5876 2.9118 17 7 3.8915 2.9067 4.0671 18 6 4.2349 2.8036 5.3853 19 6 3.3754 3.1945 6.3521 20 9 3.7293 3.0858 7.6513 21 6 2.1137 3.7129 6.0109 22 6 1.7611 3.8202 4.7017 23 6 2.6689 3.4087 3.7055 24 7 2.5961 3.3980 2.3814 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7031 1.9470 0.9056 31 1 1.6507 1.9655 -0.8735 32 1 3.4251 0.2873 -1.7958 33 1 3.8721 1.9932 -2.0377 34 1 5.9207 -0.0704 -4.3971 35 1 5.1290 2.7401 0.2788 36 1 3.5970 3.5390 -0.1491 37 1 5.5412 2.1632 2.8352 38 1 5.2017 2.4066 5.6572 39 1 1.4281 4.0253 6.7848 40 1 0.7947 4.2173 4.4281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232412270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = 47.212186 kcal Electronic energy + Delta-G solvation = -22739.960133 eV Core-core repulsion = 19277.683893 eV Total energy + Delta-G solvation = -3462.276241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -49.29216 -42.79356 -37.75761 -36.47926 -33.79095 -33.06849 -32.27241 -30.16837 -29.01281 -27.25175 -26.43387 -24.10604 -23.36019 -22.79218 -21.63026 -20.51750 -19.51702 -18.36424 -17.70920 -16.52612 -16.42373 -16.32667 -15.40312 -15.22875 -14.92634 -14.66346 -14.42021 -14.22086 -13.83823 -13.69032 -13.39604 -13.29764 -12.37537 -12.15847 -11.87056 -11.78514 -11.43901 -11.38357 -11.17627 -11.11497 -10.94062 -10.69710 -10.59090 -10.42070 -10.08201 -10.03038 -9.55373 -9.19824 -8.59312 -8.39946 -7.93044 -7.19209 -6.00252 -4.01598 0.44192 1.05217 2.40307 2.81187 3.33473 3.36339 3.38297 3.40390 3.81478 4.03709 4.24073 4.44029 4.52780 4.75910 5.06875 5.27032 5.35512 5.38115 5.45766 5.54315 5.60289 5.65506 5.68584 5.82457 5.97868 6.10713 6.21835 6.27797 6.34610 6.37611 6.46164 6.51294 6.74928 6.80966 6.93943 7.00077 7.31113 7.38920 7.83108 7.94937 8.15339 8.25774 8.58456 9.05198 9.62182 11.10396 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.004085 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.254226 B = 6853.424266 C = 8053.045068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.050 3.950 4 N -0.531 5.531 5 C 0.193 3.807 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.137 3.863 15 C 0.089 3.911 16 C -0.066 4.066 17 N -0.354 5.354 18 C 0.026 3.974 19 C 0.072 3.928 20 F -0.126 7.126 21 C -0.144 4.144 22 C -0.039 4.039 23 C 0.198 3.802 24 N -0.473 5.473 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.038 0.962 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.099 0.901 36 H 0.040 0.960 37 H 0.188 0.812 38 H 0.171 0.829 39 H 0.151 0.849 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 6.171 18.043 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.078 4.078 4 N -0.256 5.256 5 C 0.068 3.932 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.008 3.992 15 C -0.043 4.043 16 C -0.197 4.197 17 N -0.027 5.027 18 C -0.098 4.098 19 C 0.049 3.951 20 F -0.105 7.105 21 C -0.168 4.168 22 C -0.059 4.059 23 C -0.044 4.044 24 N -0.194 5.194 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.205 0.795 38 H 0.188 0.812 39 H 0.169 0.831 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.610 5.991 17.683 19.806 hybrid contribution 1.548 -0.079 0.157 1.558 sum -5.061 5.912 17.840 19.463 Atomic orbital electron populations 1.21723 0.96812 1.00772 1.01123 1.21455 0.93920 0.97519 1.02507 1.22174 0.89192 0.96129 1.00348 1.62101 1.06158 1.27888 1.29437 1.19783 0.95866 0.95610 0.81955 1.21125 0.94607 1.43770 0.94976 0.91999 1.24975 0.98294 0.95850 0.95403 1.69945 1.36495 1.47585 0.99762 0.86599 0.85121 0.78880 0.77005 1.20264 1.21421 1.20315 1.20386 1.01559 0.91921 0.85338 1.21182 0.89102 0.97103 0.96922 1.22638 1.02288 1.12721 0.82049 1.42487 1.14877 1.40478 1.04856 1.21185 1.01679 1.05383 0.81570 1.16554 0.94692 1.05407 0.78400 1.91537 1.92157 1.94344 1.32440 1.20986 0.95687 1.02852 0.97245 1.20128 0.98805 0.97910 0.89058 1.20989 0.86579 1.04568 0.92270 1.70700 1.23688 1.21660 1.03366 0.93276 0.93382 0.93138 0.91568 0.92248 0.90697 0.96007 0.94385 0.99292 0.92898 0.88237 0.94209 0.79457 0.81177 0.83103 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.11 6.07 -26.73 -0.16 -2.28 16 3 C 0.05 0.98 4.84 -3.82 -0.02 0.96 16 4 N -0.53 -11.54 4.37 -237.52 -1.04 -12.57 16 5 C 0.19 4.95 4.55 -4.98 -0.02 4.93 16 6 C -0.51 -13.82 8.53 -34.44 -0.29 -14.11 16 7 H 0.06 1.64 7.42 -52.49 -0.39 1.25 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 10 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.14 2.68 5.34 -4.98 -0.03 2.65 16 15 C 0.09 1.56 5.87 -82.98 -0.49 1.07 16 16 C -0.07 -0.99 11.66 -16.44 -0.19 -1.18 16 17 N -0.35 -4.79 2.95 -62.59 -0.18 -4.97 16 18 C 0.03 0.27 10.92 -16.53 -0.18 0.09 16 19 C 0.07 0.70 7.25 -39.79 -0.29 0.42 16 20 F -0.13 -1.21 17.26 2.25 0.04 -1.17 16 21 C -0.14 -1.25 10.05 -39.49 -0.40 -1.65 16 22 C -0.04 -0.40 10.10 -39.37 -0.40 -0.80 16 23 C 0.20 2.85 7.81 -156.06 -1.22 1.63 16 24 N -0.47 -8.07 9.86 -9.01 -0.09 -8.16 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.33 6.72 -51.93 -0.35 0.98 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.44 5.75 -51.93 -0.30 1.14 16 31 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 32 H 0.04 1.05 6.53 -51.93 -0.34 0.71 16 33 H -0.01 -0.29 8.05 -51.93 -0.42 -0.71 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.10 1.97 7.01 -51.93 -0.36 1.61 16 36 H 0.04 0.79 8.12 -51.92 -0.42 0.37 16 37 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -30.98 337.64 -9.39 -40.38 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.51 Total: -0.53 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.41 Total: -8.61 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.58 Total: -51.37 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.98 -9.39 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232412270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.592 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds