Wall clock time and date at job start Tue Mar 31 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47109 * 2 1 4 4 N 1.46908 * 109.47410 * 181.78670 * 3 2 1 5 5 C 1.46901 * 110.99828 * 75.95334 * 4 3 2 6 6 C 1.50696 * 109.47110 * 195.86488 * 5 4 3 7 7 H 1.08001 * 120.00047 * 355.42197 * 6 5 4 8 8 C 1.37879 * 120.00340 * 175.41849 * 6 5 4 9 9 N 1.31517 * 119.99650 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00237 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47243 * 60.00355 * 10 8 6 12 12 H 1.48506 * 109.47149 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47459 * 300.00251 * 10 8 6 14 14 C 1.46895 * 111.00221 * 199.91201 * 4 3 2 15 15 C 1.50695 * 109.47432 * 66.04411 * 14 4 3 16 16 C 1.35134 * 125.69331 * 94.72252 * 15 14 4 17 17 N 1.36809 * 107.17994 * 179.84454 * 16 15 14 18 18 C 1.36607 * 132.53841 * 180.10866 * 17 16 15 19 19 C 1.35135 * 120.57327 * 180.33100 * 18 17 16 20 20 F 1.35097 * 119.87746 * 179.97438 * 19 18 17 21 21 C 1.40612 * 120.24886 * 0.02562 * 19 18 17 22 22 C 1.36011 * 119.68386 * 359.97438 * 21 19 18 23 23 C 1.37014 * 107.02139 * 0.40670 * 17 16 15 24 24 N 1.32611 * 108.03459 * 359.74851 * 23 17 16 25 25 H 1.09001 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46981 * 299.99861 * 1 2 3 27 27 H 1.09002 * 109.46782 * 60.00273 * 1 2 3 28 28 H 1.08999 * 109.47618 * 239.99463 * 2 1 3 29 29 H 1.09002 * 109.46782 * 119.99727 * 2 1 3 30 30 H 1.08998 * 109.47311 * 61.78844 * 3 2 1 31 31 H 1.09000 * 109.47283 * 301.78811 * 3 2 1 32 32 H 1.09004 * 109.46771 * 315.86526 * 5 4 3 33 33 H 1.09001 * 109.46776 * 75.86168 * 5 4 3 34 34 H 0.96998 * 120.00341 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47179 * 186.04937 * 14 4 3 36 36 H 1.09008 * 109.46517 * 306.04195 * 14 4 3 37 37 H 1.07995 * 126.40720 * 359.97438 * 16 15 14 38 38 H 1.07998 * 119.71658 * 0.35271 * 18 17 16 39 39 H 1.08000 * 120.15902 * 180.02562 * 21 19 18 40 40 H 1.08006 * 120.31394 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5084 1.4427 -0.0432 5 6 3.9955 1.1238 -1.3919 6 6 5.4540 0.7512 -1.3242 7 1 5.9867 0.8224 -0.3874 8 6 6.1087 0.3193 -2.4582 9 7 5.4602 0.2330 -3.5991 10 14 7.9168 -0.1419 -2.3744 11 1 8.0995 -1.2552 -1.4089 12 1 8.3812 -0.5703 -3.7184 13 1 8.7075 1.0338 -1.9296 14 6 4.0485 2.7273 0.4216 15 6 3.7329 2.9053 1.8843 16 6 4.5510 2.5876 2.9118 17 7 3.8915 2.9067 4.0671 18 6 4.2349 2.8036 5.3853 19 6 3.3754 3.1945 6.3521 20 9 3.7293 3.0858 7.6513 21 6 2.1137 3.7129 6.0109 22 6 1.7611 3.8202 4.7017 23 6 2.6689 3.4087 3.7055 24 7 2.5961 3.3980 2.3814 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7031 1.9470 0.9056 31 1 1.6507 1.9655 -0.8735 32 1 3.4251 0.2873 -1.7958 33 1 3.8721 1.9932 -2.0377 34 1 5.9207 -0.0704 -4.3971 35 1 5.1290 2.7401 0.2788 36 1 3.5970 3.5390 -0.1491 37 1 5.5412 2.1632 2.8352 38 1 5.2017 2.4066 5.6572 39 1 1.4281 4.0253 6.7848 40 1 0.7947 4.2173 4.4281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232412270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:00 Heat of formation + Delta-G solvation = 29.993032 kcal Electronic energy + Delta-G solvation = -22740.706812 eV Core-core repulsion = 19277.683893 eV Total energy + Delta-G solvation = -3463.022919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 11.61 seconds Orbital eigenvalues (eV) -50.07051 -43.84195 -39.12342 -37.78001 -34.94174 -34.73601 -33.96382 -31.42409 -30.01528 -29.14792 -27.75314 -25.69355 -24.52164 -23.76610 -23.27922 -21.86552 -21.06592 -19.28981 -18.66616 -18.50034 -17.37978 -17.29070 -16.84353 -16.34253 -16.11199 -15.98721 -15.90529 -15.55603 -15.31261 -15.00326 -14.55998 -14.32094 -14.06081 -13.79518 -13.33154 -13.14415 -12.93962 -12.64210 -12.61185 -12.57258 -12.45350 -12.21633 -12.02835 -11.97745 -11.85059 -11.43700 -11.23143 -11.04707 -10.54997 -9.66387 -9.00993 -8.92800 -8.15050 -6.24949 -0.38942 0.13570 1.42833 1.44344 1.47603 1.55048 1.68415 2.36627 2.44632 2.95785 3.08253 3.17749 3.36309 3.49810 3.79028 3.87013 4.06664 4.13159 4.22456 4.35818 4.51152 4.56907 4.63134 4.69321 4.75782 4.82459 4.85756 4.87349 4.95566 5.01876 5.15261 5.17541 5.28877 5.35861 5.42303 5.44628 5.53492 5.71339 6.00684 6.10827 6.38911 6.62412 6.83003 6.89971 7.44213 8.95987 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.004085 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.254226 B = 6853.424266 C = 8053.045068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.055 3.945 4 N -0.533 5.533 5 C 0.209 3.791 6 C -0.519 4.519 7 H 0.068 0.932 8 C 0.002 3.998 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.265 1.265 14 C 0.145 3.855 15 C 0.061 3.939 16 C -0.068 4.068 17 N -0.356 5.356 18 C 0.015 3.985 19 C 0.079 3.921 20 F -0.121 7.121 21 C -0.116 4.116 22 C -0.054 4.054 23 C 0.194 3.806 24 N -0.510 5.510 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.009 0.991 32 H 0.011 0.989 33 H -0.042 1.042 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.204 0.796 38 H 0.195 0.805 39 H 0.190 0.810 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 6.255 21.403 23.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.074 4.074 4 N -0.257 5.257 5 C 0.083 3.917 6 C -0.557 4.557 7 H 0.086 0.914 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.793 3.207 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.190 1.190 14 C 0.016 3.984 15 C -0.071 4.071 16 C -0.199 4.199 17 N -0.028 5.028 18 C -0.108 4.108 19 C 0.057 3.943 20 F -0.099 7.099 21 C -0.140 4.140 22 C -0.074 4.074 23 C -0.050 4.050 24 N -0.232 5.232 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.027 0.973 32 H 0.029 0.971 33 H -0.024 1.024 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.220 0.780 38 H 0.212 0.788 39 H 0.207 0.793 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.537 6.083 21.075 22.888 hybrid contribution 1.450 -0.038 -0.673 1.599 sum -5.087 6.045 20.402 21.878 Atomic orbital electron populations 1.21655 0.93762 1.02266 1.01864 1.21413 0.96584 0.95984 1.00983 1.22203 0.87908 0.97160 1.00090 1.62075 1.07510 1.29518 1.26602 1.19420 0.95447 0.93248 0.83550 1.21437 0.95300 1.43597 0.95348 0.91404 1.25905 1.03237 0.95602 0.94853 1.70092 1.38563 1.48519 1.00549 0.85447 0.79129 0.79005 0.77093 1.19348 1.21239 1.18976 1.20182 1.00660 0.90218 0.87369 1.20708 0.90666 0.99848 0.95848 1.22686 1.02585 1.12499 0.82158 1.42506 1.14506 1.40266 1.05529 1.21644 1.03148 1.05566 0.80410 1.16701 0.94855 1.04410 0.78374 1.91566 1.92155 1.94187 1.32010 1.21416 0.95391 0.99851 0.97342 1.20459 0.99295 0.98843 0.88808 1.21556 0.87447 1.03913 0.92058 1.70556 1.24010 1.23416 1.05173 0.91417 0.92001 0.92999 0.94223 0.92491 0.89710 0.97305 0.97084 1.02403 0.92810 0.89146 0.95604 0.77961 0.78783 0.79297 0.80088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.11 -4.18 6.07 30.59 0.19 -4.00 16 3 C 0.05 2.24 4.84 86.30 0.42 2.66 16 4 N -0.53 -24.35 4.37 -905.37 -3.96 -28.31 16 5 C 0.21 11.42 4.55 85.56 0.39 11.81 16 6 C -0.52 -29.21 8.53 25.60 0.22 -28.99 16 7 H 0.07 3.66 7.42 -2.91 -0.02 3.64 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 10 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 14 C 0.14 5.97 5.34 85.56 0.46 6.43 16 15 C 0.06 2.17 5.87 41.59 0.24 2.41 16 16 C -0.07 -2.01 11.66 83.20 0.97 -1.04 16 17 N -0.36 -9.09 2.95 -351.94 -1.04 -10.12 16 18 C 0.02 0.28 10.92 83.23 0.91 1.19 16 19 C 0.08 1.24 7.25 22.13 0.16 1.40 16 20 F -0.12 -1.82 17.26 44.97 0.78 -1.05 16 21 C -0.12 -1.52 10.05 22.33 0.22 -1.30 16 22 C -0.05 -0.97 10.10 22.41 0.23 -0.74 16 23 C 0.19 5.31 7.81 134.11 1.05 6.36 16 24 N -0.51 -17.51 9.86 -182.43 -1.80 -19.31 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.67 6.72 -2.39 -0.02 1.66 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 3.34 5.75 -2.39 -0.01 3.33 16 31 H 0.01 0.37 8.00 -2.39 -0.02 0.36 16 32 H 0.01 0.66 6.53 -2.38 -0.02 0.64 16 33 H -0.04 -2.48 8.05 -2.39 -0.02 -2.49 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.09 3.79 7.01 -2.39 -0.02 3.78 16 36 H 0.03 1.11 8.12 -2.38 -0.02 1.09 16 37 H 0.20 5.11 8.06 -2.91 -0.02 5.09 16 38 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -69.66 337.64 3.96 -65.71 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.04 Total: 10.17 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 6.62 Total: -6.52 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.51 Total: -114.25 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.66 3.96 -65.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232412270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.698 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.61 seconds