Wall clock time and date at job start Tue Mar 31 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 C 1.53003 * 109.47198 * 184.51206 * 3 2 1 5 5 N 1.46497 * 109.47009 * 177.88011 * 4 3 2 6 6 C 1.36933 * 120.00460 * 84.76539 * 5 4 3 7 7 H 1.08001 * 119.99880 * 319.95797 * 6 5 4 8 8 C 1.38815 * 120.00523 * 139.96472 * 6 5 4 9 9 N 1.31618 * 120.00179 * 157.11819 * 8 6 5 10 10 Si 1.86797 * 119.99576 * 337.11520 * 8 6 5 11 11 H 1.48501 * 109.47514 * 93.34379 * 10 8 6 12 12 H 1.48506 * 109.46852 * 213.34452 * 10 8 6 13 13 H 1.48500 * 109.47150 * 333.33921 * 10 8 6 14 14 C 1.46502 * 119.99881 * 264.76227 * 5 4 3 15 15 C 1.50694 * 109.47357 * 90.00110 * 14 5 4 16 16 C 1.35130 * 125.69360 * 94.72186 * 15 14 5 17 17 N 1.36814 * 107.18187 * 179.84394 * 16 15 14 18 18 C 1.36602 * 132.54315 * 180.10632 * 17 16 15 19 19 C 1.35135 * 120.57349 * 180.33381 * 18 17 16 20 20 F 1.35098 * 119.87626 * 179.97438 * 19 18 17 21 21 C 1.40611 * 120.25031 * 0.02562 * 19 18 17 22 22 C 1.36007 * 119.68210 * 359.97438 * 21 19 18 23 23 C 1.37021 * 107.01814 * 0.41201 * 17 16 15 24 24 N 1.32616 * 108.03147 * 359.74109 * 23 17 16 25 25 H 1.08995 * 109.47361 * 299.99950 * 1 2 3 26 26 H 1.08998 * 109.47052 * 60.00599 * 1 2 3 27 27 H 1.09004 * 109.46795 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47513 * 239.99520 * 2 1 3 29 29 H 1.09007 * 109.47062 * 119.99670 * 2 1 3 30 30 H 1.09006 * 109.47152 * 64.51457 * 3 2 1 31 31 H 1.08997 * 109.47086 * 304.50809 * 3 2 1 32 32 H 1.09003 * 109.46849 * 297.87538 * 4 3 2 33 33 H 1.08999 * 109.47453 * 57.87460 * 4 3 2 34 34 H 0.96995 * 120.00063 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.47139 * 210.00324 * 14 5 4 36 36 H 1.09004 * 109.47037 * 329.99649 * 14 5 4 37 37 H 1.07999 * 126.40734 * 359.97438 * 16 15 14 38 38 H 1.08005 * 119.71106 * 0.35725 * 18 17 16 39 39 H 1.08001 * 120.15811 * 180.02562 * 21 19 18 40 40 H 1.08006 * 120.31351 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5658 1.4440 -0.1135 5 7 4.0502 2.8256 -0.1644 6 6 4.2625 3.5201 0.9965 7 1 3.5689 3.4224 1.8186 8 6 5.3688 4.3498 1.1167 9 7 5.3611 5.3347 1.9898 10 14 6.8686 4.0684 0.0393 11 1 6.7682 4.9113 -1.1791 12 1 8.0951 4.4325 0.7934 13 1 6.9351 2.6376 -0.3527 14 6 4.3077 3.4643 -1.4575 15 6 3.0553 4.1522 -1.9363 16 6 2.7502 5.4550 -1.7479 17 7 1.5351 5.6748 -2.3369 18 6 0.7541 6.7893 -2.4553 19 6 -0.4341 6.7311 -3.0964 20 9 -1.1954 7.8418 -3.2048 21 6 -0.8815 5.5185 -3.6502 22 6 -0.1122 4.4025 -3.5383 23 6 1.1245 4.4799 -2.8672 24 7 2.0597 3.5748 -2.6125 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7441 1.9325 0.9277 31 1 1.6121 1.9791 -0.8468 32 1 3.9950 0.9402 0.7526 33 1 3.8631 0.9209 -1.0224 34 1 6.1344 5.9142 2.0740 35 1 5.1061 4.1984 -1.3476 36 1 4.6070 2.7080 -2.1831 37 1 3.3537 6.1865 -1.2310 38 1 1.0893 7.7252 -2.0331 39 1 -1.8312 5.4738 -4.1626 40 1 -0.4458 3.4659 -3.9602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232416885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:28 Heat of formation + Delta-G solvation = 46.650994 kcal Electronic energy + Delta-G solvation = -23368.200269 eV Core-core repulsion = 19905.899693 eV Total energy + Delta-G solvation = -3462.300576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -50.08978 -43.75486 -38.78756 -37.58935 -35.53325 -34.68753 -33.64685 -31.51980 -30.11361 -29.47451 -27.75001 -25.68411 -24.47973 -23.71992 -22.73115 -21.73738 -21.67068 -19.35910 -18.89528 -18.43647 -17.33219 -17.27079 -17.08494 -16.35700 -16.10230 -16.08259 -15.75567 -15.47127 -15.19816 -14.74113 -14.67009 -14.43888 -14.25135 -14.01362 -13.56789 -13.34563 -12.89893 -12.67062 -12.62034 -12.47372 -12.09795 -12.02816 -11.98979 -11.86314 -11.75826 -11.64710 -11.20598 -11.05552 -10.58441 -9.59318 -8.89880 -8.72334 -8.19353 -5.60337 -0.38025 0.16315 1.32605 1.44842 1.46421 1.57032 1.76716 2.40648 2.44197 2.96724 3.08871 3.15284 3.43931 3.49454 3.77666 3.89439 4.16069 4.20458 4.28921 4.34610 4.43793 4.52936 4.56749 4.70642 4.70932 4.82962 4.87822 4.91113 4.99751 5.03809 5.07236 5.10259 5.19013 5.41097 5.46060 5.51192 5.60355 5.70234 5.96343 6.04718 6.21824 6.88623 6.99376 7.62035 8.08404 9.00058 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.006133 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.681285 B = 4564.509877 C = 6118.063091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.127 4.127 4 C 0.149 3.851 5 N -0.602 5.602 6 C -0.255 4.255 7 H 0.030 0.970 8 C -0.006 4.006 9 N -0.942 5.942 10 Si 0.932 3.068 11 H -0.267 1.267 12 H -0.306 1.306 13 H -0.257 1.257 14 C 0.206 3.794 15 C 0.053 3.947 16 C -0.090 4.090 17 N -0.357 5.357 18 C 0.007 3.993 19 C 0.080 3.920 20 F -0.121 7.121 21 C -0.119 4.119 22 C -0.050 4.050 23 C 0.188 3.812 24 N -0.493 5.493 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.175 0.825 38 H 0.184 0.816 39 H 0.193 0.807 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 -1.782 -13.472 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.167 4.167 4 C 0.025 3.975 5 N -0.323 5.323 6 C -0.385 4.385 7 H 0.047 0.953 8 C -0.204 4.204 9 N -0.585 5.585 10 Si 0.760 3.240 11 H -0.194 1.194 12 H -0.234 1.234 13 H -0.181 1.181 14 C 0.079 3.921 15 C -0.081 4.081 16 C -0.222 4.222 17 N -0.029 5.029 18 C -0.116 4.116 19 C 0.057 3.943 20 F -0.100 7.100 21 C -0.142 4.142 22 C -0.070 4.070 23 C -0.055 4.055 24 N -0.214 5.214 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.192 0.808 38 H 0.201 0.799 39 H 0.210 0.790 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.014 -2.444 -13.565 18.285 hybrid contribution 0.915 1.686 0.687 2.038 sum -11.099 -0.758 -12.878 17.018 Atomic orbital electron populations 1.21701 0.95353 1.01940 1.01075 1.21427 0.96338 0.95549 1.01948 1.22004 0.97787 0.96982 0.99939 1.21058 0.92886 0.83993 0.99592 1.44153 1.77420 1.10207 1.00531 1.18439 1.04416 1.22370 0.93225 0.95267 1.26020 0.99843 0.96292 0.98198 1.70013 1.30961 1.17091 1.40399 0.86024 0.79781 0.79809 0.78403 1.19368 1.23386 1.18099 1.19730 0.89758 0.95539 0.87050 1.22041 0.98408 0.90748 0.96919 1.22552 0.89118 1.00610 1.09898 1.42497 1.14785 1.09387 1.36242 1.21596 0.93032 0.92232 1.04784 1.16678 0.89807 0.84853 1.02964 1.91553 1.73765 1.50166 1.94467 1.21405 1.02793 0.89108 1.00923 1.20482 0.88073 1.01506 0.96905 1.21723 0.99029 0.81590 1.03143 1.70573 1.01864 1.29452 1.19556 0.94055 0.93100 0.91114 0.91175 0.92278 0.96249 0.92212 0.93912 0.92146 0.92692 0.92477 0.90640 0.80778 0.79928 0.78992 0.79656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.11 -3.35 5.93 30.59 0.18 -3.17 16 3 C -0.13 -4.88 5.51 30.59 0.17 -4.72 16 4 C 0.15 6.15 5.72 86.38 0.49 6.64 16 5 N -0.60 -28.81 2.02 -706.33 -1.42 -30.24 16 6 C -0.25 -14.41 9.88 84.03 0.83 -13.58 16 7 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 8 C -0.01 -0.35 5.27 84.86 0.45 0.10 16 9 N -0.94 -57.26 13.97 21.65 0.30 -56.96 16 10 Si 0.93 44.46 25.29 68.60 1.73 46.19 16 11 H -0.27 -11.93 6.59 99.48 0.66 -11.28 16 12 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 13 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 14 C 0.21 9.02 5.08 85.63 0.44 9.46 16 15 C 0.05 2.22 6.50 41.59 0.27 2.49 16 16 C -0.09 -3.60 11.66 83.20 0.97 -2.63 16 17 N -0.36 -11.93 2.95 -351.92 -1.04 -12.97 16 18 C 0.01 0.18 10.92 83.24 0.91 1.09 16 19 C 0.08 1.70 7.25 22.13 0.16 1.86 16 20 F -0.12 -2.43 17.26 44.97 0.78 -1.65 16 21 C -0.12 -2.06 10.05 22.33 0.22 -1.84 16 22 C -0.05 -1.09 10.10 22.41 0.23 -0.87 16 23 C 0.19 6.16 7.81 134.10 1.05 7.21 16 24 N -0.49 -18.92 9.99 -182.43 -1.82 -20.74 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 2.42 6.61 -2.39 -0.02 2.40 16 32 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.06 2.22 7.83 -2.39 -0.02 2.20 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.06 2.62 3.59 -2.38 -0.01 2.61 16 36 H 0.08 2.99 7.86 -2.38 -0.02 2.97 16 37 H 0.17 7.02 8.06 -2.91 -0.02 7.00 16 38 H 0.18 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -68.37 335.29 6.59 -61.78 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.98 Total: 15.46 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 7.08 Total: -0.88 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -3.98 Total: -120.91 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.73 Total: 46.19 kcal Total: -68.37 6.59 -61.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232416885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.430 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds