Wall clock time and date at job start Tue Mar 31 2020 07:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00121 * 2 1 4 4 C 1.39032 * 111.00305 * 123.95184 * 2 1 3 5 5 C 1.38830 * 120.15675 * 300.00193 * 4 2 1 6 6 C 1.38079 * 120.13504 * 179.74001 * 5 4 2 7 7 C 1.38463 * 120.46147 * 0.25603 * 6 5 4 8 8 C 1.50703 * 119.84092 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47274 * 260.00287 * 8 7 6 10 10 C 1.46899 * 111.00240 * 293.95114 * 9 8 7 11 11 C 1.46899 * 110.99939 * 170.00075 * 9 8 7 12 12 C 1.50695 * 109.47571 * 189.99716 * 11 9 8 13 13 H 1.08000 * 119.99643 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00477 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99670 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99963 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47439 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46951 * 120.00585 * 16 14 12 19 19 H 1.48507 * 109.47423 * 240.00089 * 16 14 12 20 20 C 1.38110 * 120.31604 * 359.97438 * 7 6 5 21 21 F 1.35102 * 120.07200 * 179.97438 * 20 7 6 22 22 C 1.39975 * 119.85299 * 0.02562 * 20 7 6 23 23 C 1.43195 * 120.22124 * 180.02562 * 22 20 7 24 24 N 3.54424 * 122.71752 * 211.06580 * 2 1 3 25 25 H 1.09000 * 109.47068 * 296.04785 * 1 2 3 26 26 H 1.08997 * 109.46902 * 56.04748 * 1 2 3 27 27 H 1.09008 * 109.46873 * 176.04564 * 1 2 3 28 28 H 1.09000 * 109.47159 * 183.95322 * 3 2 1 29 29 H 1.08999 * 109.46513 * 303.94955 * 3 2 1 30 30 H 1.08997 * 109.46862 * 63.95352 * 3 2 1 31 31 H 1.08002 * 119.93472 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.77111 * 180.27528 * 6 5 4 33 33 H 1.09004 * 109.46912 * 20.00836 * 8 7 6 34 34 H 1.09003 * 109.46703 * 139.99926 * 8 7 6 35 35 H 1.09005 * 109.46727 * 60.00143 * 10 9 8 36 36 H 1.08993 * 109.47607 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47332 * 300.01048 * 10 9 8 38 38 H 1.08997 * 109.47330 * 310.00211 * 11 9 8 39 39 H 1.09003 * 109.47107 * 69.99848 * 11 9 8 40 40 H 0.97006 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9673 -0.7249 1.0767 5 6 1.6569 -0.3464 2.3758 6 6 2.1477 -1.0698 3.4446 7 6 2.9562 -2.1737 3.2330 8 6 3.4847 -2.9528 4.4098 9 7 4.8730 -2.5544 4.6773 10 6 5.7563 -2.9491 3.5719 11 6 5.3442 -3.1114 5.9523 12 6 6.6692 -2.4905 6.3128 13 1 7.1162 -1.7552 5.6602 14 6 7.3101 -2.8603 7.4762 15 7 6.7654 -3.7553 8.2710 16 14 8.9520 -2.0900 7.9233 17 1 9.3459 -1.1185 6.8714 18 1 8.8306 -1.3868 9.2256 19 1 9.9848 -3.1519 8.0286 20 6 3.2808 -2.5642 1.9486 21 9 4.0706 -3.6418 1.7479 22 6 2.7905 -1.8404 0.8555 23 6 3.1216 -2.2386 -0.4796 24 7 3.3846 -2.5542 -1.5387 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8723 0.9233 31 1 1.0265 0.5130 2.5507 32 1 1.8988 -0.7727 4.4527 33 1 2.8718 -2.7460 5.2872 34 1 3.4494 -4.0189 4.1851 35 1 5.4253 -2.4666 2.6523 36 1 6.7780 -2.6426 3.7960 37 1 5.7211 -4.0314 3.4473 38 1 4.6167 -2.8949 6.7345 39 1 5.4632 -4.1906 5.8555 40 1 7.2165 -4.0157 9.0894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233096513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:06 Heat of formation + Delta-G solvation = 35.147653 kcal Electronic energy + Delta-G solvation = -22944.033250 eV Core-core repulsion = 19481.233852 eV Total energy + Delta-G solvation = -3462.799398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.12685 -40.31659 -37.55214 -36.53644 -35.77182 -32.68531 -31.54194 -30.51728 -27.96176 -27.32626 -26.83235 -25.05879 -23.92784 -23.16854 -21.31125 -20.38937 -18.52310 -17.54349 -17.15438 -16.45347 -16.19281 -15.67267 -15.34566 -14.88681 -14.71039 -14.48777 -14.15058 -13.78345 -13.55858 -13.49164 -13.28305 -13.11209 -12.79360 -12.65647 -12.30768 -12.13310 -12.08020 -11.99619 -11.86422 -11.47727 -11.37538 -11.03476 -10.81123 -10.67884 -10.41645 -9.92754 -9.26626 -9.04111 -8.97328 -8.76010 -8.45998 -7.33441 -6.05800 -4.06914 0.50398 0.86687 2.69789 2.83182 3.28811 3.29755 3.37418 3.42361 3.56989 3.73795 4.19393 4.40846 4.62791 4.69304 4.76971 4.90264 4.95668 5.10736 5.13807 5.15490 5.22460 5.30942 5.43004 5.51175 5.56869 5.78961 5.80810 5.96920 5.99285 6.14291 6.24338 6.40291 6.41924 6.43092 6.77409 6.89416 7.20351 7.28795 7.51484 7.74958 7.99957 8.11648 8.47663 9.00762 9.57460 11.05141 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.003635 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.925507 B = 7700.241009 C = 7993.098504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.518 5.518 3 C 0.028 3.972 4 C 0.151 3.849 5 C -0.161 4.161 6 C -0.035 4.035 7 C -0.094 4.094 8 C 0.087 3.913 9 N -0.533 5.533 10 C 0.031 3.969 11 C 0.192 3.808 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.157 3.843 21 F -0.119 7.119 22 C -0.048 4.048 23 C 0.273 3.727 24 N -0.414 5.414 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.017 0.983 38 H 0.032 0.968 39 H -0.007 1.007 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 8.199 -12.203 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.239 5.239 3 C -0.118 4.118 4 C 0.054 3.946 5 C -0.181 4.181 6 C -0.055 4.055 7 C -0.096 4.096 8 C -0.041 4.041 9 N -0.258 5.258 10 C -0.118 4.118 11 C 0.067 3.933 12 C -0.545 4.545 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C 0.134 3.866 21 F -0.098 7.098 22 C -0.053 4.053 23 C -0.043 4.043 24 N -0.089 5.089 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.011 0.989 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.880 7.865 -14.095 21.288 hybrid contribution 0.682 -0.205 1.382 1.555 sum -13.198 7.660 -12.713 19.861 Atomic orbital electron populations 1.22490 0.84906 1.03093 1.01358 1.59275 1.09146 1.14865 1.40647 1.22498 1.01456 0.86531 1.01362 1.18317 0.94469 0.92301 0.89506 1.21573 1.02915 1.01647 0.91957 1.21059 0.92954 0.91585 0.99863 1.20072 0.98551 0.97950 0.92982 1.21043 0.93292 0.95654 0.94145 1.62255 0.98708 1.59992 1.04797 1.22481 0.98846 0.97330 0.93136 1.19774 0.96117 0.93141 0.84220 1.21179 1.03990 1.23290 1.06051 0.91745 1.24979 0.98074 0.95241 0.96301 1.69963 1.39021 1.31871 1.12965 0.86446 0.83537 0.79105 0.78371 1.19635 1.21000 1.21111 1.17350 0.91739 0.85249 0.92300 1.91567 1.70585 1.51893 1.95712 1.15834 1.05069 0.98947 0.85464 1.24966 0.93584 0.93376 0.92346 1.81154 1.08423 1.08280 1.11064 0.94361 0.90571 0.90900 0.90765 0.90562 0.94284 0.84658 0.83787 0.89388 0.94098 0.93576 0.90736 0.96420 0.95019 0.98886 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.34 60.06 0.56 0.75 16 2 N -0.52 -4.89 4.36 -186.60 -0.81 -5.70 16 3 C 0.03 0.21 9.38 60.07 0.56 0.77 16 4 C 0.15 1.61 4.72 -83.57 -0.39 1.21 16 5 C -0.16 -1.46 8.55 -39.42 -0.34 -1.80 16 6 C -0.03 -0.37 9.64 -39.56 -0.38 -0.75 16 7 C -0.09 -1.27 5.16 -104.58 -0.54 -1.81 16 8 C 0.09 1.42 5.00 -4.98 -0.02 1.40 16 9 N -0.53 -11.00 4.74 -245.83 -1.17 -12.16 16 10 C 0.03 0.61 7.91 60.06 0.48 1.08 16 11 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 12 C -0.51 -13.91 8.46 -34.44 -0.29 -14.20 16 13 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 16 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.16 2.21 5.85 -38.98 -0.23 1.98 16 21 F -0.12 -1.90 13.31 2.25 0.03 -1.87 16 22 C -0.05 -0.62 5.76 -106.51 -0.61 -1.23 16 23 C 0.27 4.01 14.46 -22.47 -0.33 3.69 16 24 N -0.41 -6.74 18.54 41.84 0.78 -5.96 16 25 H 0.04 0.21 7.11 -51.93 -0.37 -0.15 16 26 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.04 0.25 7.33 -51.93 -0.38 -0.13 16 31 H 0.14 0.90 7.00 -52.49 -0.37 0.53 16 32 H 0.14 1.29 8.03 -52.48 -0.42 0.87 16 33 H 0.09 1.33 7.78 -51.93 -0.40 0.93 16 34 H 0.04 0.69 7.91 -51.93 -0.41 0.27 16 35 H 0.05 0.82 5.06 -51.93 -0.26 0.56 16 36 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 37 H 0.02 0.35 7.80 -51.93 -0.41 -0.06 16 38 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 39 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -31.07 338.30 -7.42 -38.49 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -5.40 Total: -6.10 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.66 Total: -2.67 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.47 Total: -49.27 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.03 Total: -1.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.07 -7.42 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233096513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.639 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds