Wall clock time and date at job start Tue Mar 31 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00121 * 2 1 4 4 C 1.39032 * 111.00305 * 123.95184 * 2 1 3 5 5 C 1.38830 * 120.15675 * 300.00193 * 4 2 1 6 6 C 1.38079 * 120.13504 * 179.74001 * 5 4 2 7 7 C 1.38463 * 120.46147 * 0.25603 * 6 5 4 8 8 C 1.50703 * 119.84092 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47274 * 260.00287 * 8 7 6 10 10 C 1.46899 * 111.00240 * 293.95114 * 9 8 7 11 11 C 1.46899 * 110.99939 * 170.00075 * 9 8 7 12 12 C 1.50695 * 109.47571 * 189.99716 * 11 9 8 13 13 H 1.08000 * 119.99643 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00477 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99670 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99963 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47439 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46951 * 120.00585 * 16 14 12 19 19 H 1.48507 * 109.47423 * 240.00089 * 16 14 12 20 20 C 1.38110 * 120.31604 * 359.97438 * 7 6 5 21 21 F 1.35102 * 120.07200 * 179.97438 * 20 7 6 22 22 C 1.39975 * 119.85299 * 0.02562 * 20 7 6 23 23 C 1.43195 * 120.22124 * 180.02562 * 22 20 7 24 24 N 3.54424 * 122.71752 * 211.06580 * 2 1 3 25 25 H 1.09000 * 109.47068 * 296.04785 * 1 2 3 26 26 H 1.08997 * 109.46902 * 56.04748 * 1 2 3 27 27 H 1.09008 * 109.46873 * 176.04564 * 1 2 3 28 28 H 1.09000 * 109.47159 * 183.95322 * 3 2 1 29 29 H 1.08999 * 109.46513 * 303.94955 * 3 2 1 30 30 H 1.08997 * 109.46862 * 63.95352 * 3 2 1 31 31 H 1.08002 * 119.93472 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.77111 * 180.27528 * 6 5 4 33 33 H 1.09004 * 109.46912 * 20.00836 * 8 7 6 34 34 H 1.09003 * 109.46703 * 139.99926 * 8 7 6 35 35 H 1.09005 * 109.46727 * 60.00143 * 10 9 8 36 36 H 1.08993 * 109.47607 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47332 * 300.01048 * 10 9 8 38 38 H 1.08997 * 109.47330 * 310.00211 * 11 9 8 39 39 H 1.09003 * 109.47107 * 69.99848 * 11 9 8 40 40 H 0.97006 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9673 -0.7249 1.0767 5 6 1.6569 -0.3464 2.3758 6 6 2.1477 -1.0698 3.4446 7 6 2.9562 -2.1737 3.2330 8 6 3.4847 -2.9528 4.4098 9 7 4.8730 -2.5544 4.6773 10 6 5.7563 -2.9491 3.5719 11 6 5.3442 -3.1114 5.9523 12 6 6.6692 -2.4905 6.3128 13 1 7.1162 -1.7552 5.6602 14 6 7.3101 -2.8603 7.4762 15 7 6.7654 -3.7553 8.2710 16 14 8.9520 -2.0900 7.9233 17 1 9.3459 -1.1185 6.8714 18 1 8.8306 -1.3868 9.2256 19 1 9.9848 -3.1519 8.0286 20 6 3.2808 -2.5642 1.9486 21 9 4.0706 -3.6418 1.7479 22 6 2.7905 -1.8404 0.8555 23 6 3.1216 -2.2386 -0.4796 24 7 3.3846 -2.5542 -1.5387 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8723 0.9233 31 1 1.0265 0.5130 2.5507 32 1 1.8988 -0.7727 4.4527 33 1 2.8718 -2.7460 5.2872 34 1 3.4494 -4.0189 4.1851 35 1 5.4253 -2.4666 2.6523 36 1 6.7780 -2.6426 3.7960 37 1 5.7211 -4.0314 3.4473 38 1 4.6167 -2.8949 6.7345 39 1 5.4632 -4.1906 5.8555 40 1 7.2165 -4.0157 9.0894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233096513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:00 Heat of formation + Delta-G solvation = 15.439050 kcal Electronic energy + Delta-G solvation = -22944.887879 eV Core-core repulsion = 19481.233852 eV Total energy + Delta-G solvation = -3463.654027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -50.27594 -41.18665 -38.78601 -37.65522 -37.04295 -34.67418 -32.62194 -31.58915 -29.15221 -28.49182 -28.18420 -26.29852 -25.05092 -24.44683 -22.50051 -21.82174 -19.61653 -18.59386 -18.41589 -18.01380 -17.49411 -16.70986 -16.55149 -16.05031 -15.81412 -15.69567 -15.49265 -15.36760 -14.69463 -14.60883 -14.43796 -14.32179 -13.94143 -13.70399 -13.46073 -13.30830 -13.16316 -13.07228 -12.80735 -12.77162 -12.61187 -12.57808 -12.48925 -12.29412 -12.16800 -11.82697 -11.26845 -10.60176 -10.00530 -9.75909 -9.58544 -9.04811 -8.18512 -6.27545 -0.44962 -0.06327 1.42735 1.43837 1.56127 1.56895 1.80915 2.41998 2.51270 2.56708 2.70393 3.14668 3.23679 3.43161 3.68869 3.84231 4.01606 4.05122 4.32391 4.44748 4.45730 4.47733 4.60939 4.66447 4.66922 4.70029 4.80605 4.92523 5.02585 5.04602 5.06393 5.15276 5.20083 5.30430 5.31106 5.51077 5.66730 5.85548 6.05081 6.15202 6.25679 6.39734 6.58538 6.87908 7.41816 8.92583 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.003635 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.925507 B = 7700.241009 C = 7993.098504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.027 3.973 4 C 0.168 3.832 5 C -0.142 4.142 6 C -0.020 4.020 7 C -0.109 4.109 8 C 0.088 3.912 9 N -0.535 5.535 10 C 0.040 3.960 11 C 0.206 3.794 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.004 3.996 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.282 1.282 20 C 0.141 3.859 21 F -0.138 7.138 22 C -0.064 4.064 23 C 0.286 3.714 24 N -0.452 5.452 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.101 0.899 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.008 0.992 38 H 0.018 0.982 39 H -0.038 1.038 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.824 10.851 -12.207 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.263 5.263 3 C -0.119 4.119 4 C 0.070 3.930 5 C -0.161 4.161 6 C -0.040 4.040 7 C -0.111 4.111 8 C -0.040 4.040 9 N -0.259 5.259 10 C -0.109 4.109 11 C 0.080 3.920 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.194 4.194 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.208 1.208 20 C 0.119 3.881 21 F -0.117 7.117 22 C -0.069 4.069 23 C -0.029 4.029 24 N -0.127 5.127 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.192 0.808 32 H 0.185 0.815 33 H 0.119 0.881 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.027 0.973 38 H 0.036 0.964 39 H -0.021 1.021 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.200 10.530 -14.124 23.269 hybrid contribution 0.961 -0.982 1.323 1.907 sum -14.239 9.549 -12.801 21.396 Atomic orbital electron populations 1.22576 0.83104 1.03164 1.03085 1.59282 1.10785 1.15888 1.40309 1.22558 1.00630 0.85649 1.03062 1.18506 0.92694 0.91012 0.90752 1.21890 1.01964 1.01867 0.90426 1.21339 0.91165 0.89928 1.01571 1.19839 1.00552 0.99383 0.91319 1.21051 0.90929 0.95805 0.96169 1.62157 1.00909 1.59637 1.03213 1.22385 0.97864 0.96926 0.93701 1.19439 0.95250 0.91156 0.86144 1.21483 1.05062 1.23270 1.06192 0.92020 1.25844 1.01734 0.95639 0.96221 1.70076 1.40690 1.33117 1.13475 0.85385 0.78930 0.78300 0.78310 1.18885 1.20154 1.20794 1.17531 0.92356 0.85263 0.92996 1.91514 1.71340 1.52963 1.95855 1.15948 1.06593 1.00251 0.84119 1.25295 0.92602 0.92423 0.92556 1.81149 1.09821 1.09518 1.12262 0.92257 0.89267 0.91683 0.92239 0.89099 0.92383 0.80835 0.81489 0.88091 0.95099 0.91470 0.92644 0.97296 0.96397 1.02078 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.34 127.69 1.19 1.46 16 2 N -0.54 -8.61 4.36 -744.29 -3.24 -11.86 16 3 C 0.03 0.32 9.38 127.69 1.20 1.51 16 4 C 0.17 3.10 4.72 38.67 0.18 3.28 16 5 C -0.14 -1.96 8.55 22.37 0.19 -1.77 16 6 C -0.02 -0.36 9.64 22.29 0.21 -0.15 16 7 C -0.11 -2.82 5.16 -19.84 -0.10 -2.92 16 8 C 0.09 2.87 5.00 85.56 0.43 3.30 16 9 N -0.54 -22.33 4.74 -931.67 -4.42 -26.75 16 10 C 0.04 1.61 7.91 127.69 1.01 2.62 16 11 C 0.21 10.64 4.72 85.56 0.40 11.04 16 12 C -0.52 -29.06 8.46 25.60 0.22 -28.84 16 13 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 14 C 0.00 0.21 5.46 84.66 0.46 0.67 16 15 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 16 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.14 3.92 5.85 22.66 0.13 4.05 16 21 F -0.14 -4.53 13.31 44.97 0.60 -3.93 16 22 C -0.06 -1.59 5.76 -21.09 -0.12 -1.71 16 23 C 0.29 8.40 14.46 88.33 1.28 9.68 16 24 N -0.45 -14.89 18.54 19.00 0.35 -14.53 16 25 H 0.06 0.37 7.11 -2.39 -0.02 0.35 16 26 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.06 0.47 7.33 -2.39 -0.02 0.45 16 31 H 0.17 1.18 7.00 -2.91 -0.02 1.16 16 32 H 0.17 2.25 8.03 -2.91 -0.02 2.23 16 33 H 0.10 2.98 7.78 -2.38 -0.02 2.96 16 34 H 0.03 1.07 7.91 -2.39 -0.02 1.05 16 35 H 0.07 2.44 5.06 -2.38 -0.01 2.42 16 36 H 0.05 2.42 6.76 -2.39 -0.02 2.41 16 37 H 0.01 0.36 7.80 -2.39 -0.02 0.34 16 38 H 0.02 0.96 7.93 -2.39 -0.02 0.95 16 39 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 40 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -68.88 338.30 3.34 -65.55 By element: Atomic # 1 Polarization: -2.73 SS G_CDS: 1.05 Total: -1.68 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.69 Total: 2.23 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -7.03 Total: -107.98 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.60 Total: -3.93 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.88 3.34 -65.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233096513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.985 kcal (2) G-P(sol) polarization free energy of solvation -68.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds