Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46992 * 2 1 4 4 N 1.46900 * 109.47233 * 182.96859 * 3 2 1 5 5 C 1.46897 * 111.00246 * 61.70742 * 4 3 2 6 6 C 1.50705 * 109.47216 * 66.04778 * 5 4 3 7 7 H 1.08005 * 119.99636 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00341 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99796 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00254 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47265 * 89.99282 * 10 8 6 12 12 H 1.48499 * 109.47503 * 209.99856 * 10 8 6 13 13 H 1.48507 * 109.46763 * 329.99777 * 10 8 6 14 14 C 1.46898 * 110.99906 * 297.75600 * 4 3 2 15 15 C 1.50702 * 109.47343 * 284.74830 * 14 4 3 16 16 N 1.30228 * 126.10559 * 86.53136 * 15 14 4 17 17 N 1.39865 * 110.08771 * 179.97438 * 16 15 14 18 18 H 0.97002 * 125.46332 * 179.97438 * 17 16 15 19 19 C 1.37043 * 109.07794 * 0.02562 * 17 16 15 20 20 C 1.39270 * 133.79525 * 180.02562 * 19 17 16 21 21 C 1.37797 * 119.71847 * 179.97438 * 20 19 17 22 22 F 1.35106 * 119.68976 * 179.97438 * 21 20 19 23 23 C 1.39193 * 120.61531 * 0.02562 * 21 20 19 24 24 C 1.36399 * 120.61096 * 359.97358 * 23 21 20 25 25 C 1.39946 * 119.80957 * 359.78495 * 24 23 21 26 26 H 1.09005 * 109.47344 * 60.00050 * 1 2 3 27 27 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47113 * 299.99941 * 1 2 3 29 29 H 1.09004 * 109.47535 * 239.99995 * 2 1 3 30 30 H 1.08995 * 109.47461 * 120.00063 * 2 1 3 31 31 H 1.09002 * 109.47003 * 62.96996 * 3 2 1 32 32 H 1.09001 * 109.46893 * 302.96588 * 3 2 1 33 33 H 1.08995 * 109.47427 * 186.04967 * 5 4 3 34 34 H 1.09004 * 109.47218 * 306.05065 * 5 4 3 35 35 H 0.97010 * 119.99800 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47462 * 44.74377 * 14 4 3 37 37 H 1.09000 * 109.47531 * 164.74672 * 14 4 3 38 38 H 1.08004 * 120.14123 * 359.97438 * 20 19 17 39 39 H 1.08002 * 119.69338 * 179.97438 * 23 21 20 40 40 H 1.07992 * 120.09400 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5072 1.4432 -0.0717 5 6 3.9738 0.8144 -1.3146 6 6 3.5570 1.6581 -2.4917 7 1 3.0007 2.5701 -2.3324 8 6 3.8849 1.2654 -3.7720 9 7 4.5619 0.1547 -3.9659 10 14 3.3689 2.3115 -5.2310 11 1 4.4325 3.3039 -5.5294 12 1 3.1584 1.4404 -6.4150 13 1 2.1054 3.0221 -4.9082 14 6 4.0920 0.7840 1.1035 15 6 3.9920 1.7007 2.2955 16 7 2.9752 1.8016 3.1028 17 7 3.2405 2.7531 4.0930 18 1 2.6355 3.0049 4.8081 19 6 4.4919 3.2737 3.8901 20 6 5.2565 4.2311 4.5522 21 6 6.5157 4.5412 4.0863 22 9 7.2568 5.4705 4.7288 23 6 7.0309 3.9069 2.9595 24 6 6.2987 2.9663 2.2963 25 6 5.0193 2.6310 2.7536 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7207 1.9408 0.9154 32 1 1.6338 1.9715 -0.8622 33 1 5.0604 0.7311 -1.2939 34 1 3.5349 -0.1791 -1.4062 35 1 4.7930 -0.1214 -4.8667 36 1 3.5506 -0.1395 1.3091 37 1 5.1396 0.5551 0.9081 38 1 4.8642 4.7283 5.4270 39 1 8.0194 4.1617 2.6071 40 1 6.7067 2.4791 1.4232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233123461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = 38.340633 kcal Electronic energy + Delta-G solvation = -22880.489145 eV Core-core repulsion = 19417.828205 eV Total energy + Delta-G solvation = -3462.660940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.00820 -41.21021 -37.59464 -36.74179 -33.04786 -32.79534 -31.60077 -29.79293 -29.40958 -27.50135 -26.31537 -24.00143 -23.24165 -22.28461 -22.09919 -20.40318 -18.89031 -18.10648 -17.34215 -16.50011 -16.21316 -15.76424 -15.30423 -15.22711 -14.87589 -14.44139 -14.33012 -14.01363 -13.71880 -13.44467 -13.31355 -12.92388 -12.54396 -12.10643 -11.71593 -11.53279 -11.37442 -11.25894 -11.07928 -11.01505 -10.85266 -10.69941 -10.64110 -10.41214 -10.12046 -9.91228 -9.71351 -9.23213 -8.50604 -8.43360 -8.08142 -7.22612 -6.03457 -4.03821 0.79340 1.36574 2.47960 2.66599 3.32356 3.38684 3.42250 3.61717 4.17830 4.42615 4.53137 4.59601 4.70419 4.94552 5.11788 5.22573 5.33254 5.51539 5.54992 5.57979 5.62014 5.84294 5.89337 5.93917 6.01308 6.05339 6.16500 6.28078 6.39555 6.42393 6.49713 6.56156 6.73488 6.77971 6.97390 7.25032 7.28485 7.39221 7.69421 7.78293 8.04751 8.16610 8.50941 9.03216 9.60186 11.07240 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.004394 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.848892 B = 6370.981557 C = 7632.200567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.162 4.162 3 C 0.065 3.935 4 N -0.528 5.528 5 C 0.191 3.809 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.118 3.882 15 C 0.143 3.857 16 N -0.250 5.250 17 N -0.513 5.513 18 H 0.437 0.563 19 C 0.152 3.848 20 C -0.190 4.190 21 C 0.147 3.853 22 F -0.138 7.138 23 C -0.199 4.199 24 C 0.007 3.993 25 C -0.172 4.172 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.003 0.997 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 3.879 15.856 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.201 4.201 3 C -0.063 4.063 4 N -0.251 5.251 5 C 0.066 3.934 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.012 4.012 15 C -0.037 4.037 16 N -0.064 5.064 17 N -0.227 5.227 18 H 0.282 0.718 19 C 0.035 3.965 20 C -0.214 4.214 21 C 0.125 3.875 22 F -0.117 7.117 23 C -0.219 4.219 24 C -0.014 4.014 25 C -0.181 4.181 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.020 0.980 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.384 3.862 16.004 16.468 hybrid contribution 0.024 0.413 -0.420 0.590 sum -0.360 4.275 15.584 16.164 Atomic orbital electron populations 1.21625 0.96454 1.00622 1.01200 1.22144 0.95739 1.00226 1.01976 1.22078 0.88026 0.94743 1.01458 1.62273 1.06809 1.54344 1.01715 1.19833 0.95775 0.93452 0.84340 1.21111 1.35048 1.08024 0.90006 0.91960 1.24935 0.95374 0.95200 0.98897 1.69948 1.39558 1.22599 1.21721 0.86542 0.79009 0.80116 0.82014 1.20666 1.21379 1.19920 1.20583 1.01526 0.92288 0.86779 1.23755 0.89017 0.95620 0.95263 1.76648 1.22209 1.07602 0.99901 1.45920 1.13198 1.35658 1.27879 0.71840 1.18365 0.87321 0.95173 0.95689 1.19686 0.94399 1.03037 1.04262 1.17306 0.89161 0.88761 0.92292 1.91497 1.76135 1.63215 1.80819 1.20600 1.02558 1.01426 0.97314 1.20313 0.90823 0.93182 0.97046 1.19840 0.97255 1.02528 0.98433 0.92788 0.93654 0.93506 0.90576 0.92946 0.92591 0.90117 0.95155 0.97980 0.92958 0.92662 0.89065 0.84792 0.84361 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.15 0.37 -1.77 16 2 C -0.16 -2.86 5.31 -26.73 -0.14 -3.00 16 3 C 0.07 1.26 5.04 -3.82 -0.02 1.24 16 4 N -0.53 -10.76 4.62 -237.51 -1.10 -11.86 16 5 C 0.19 4.61 4.49 -4.97 -0.02 4.59 16 6 C -0.50 -13.52 8.49 -34.44 -0.29 -13.81 16 7 H 0.06 1.69 7.11 -52.48 -0.37 1.32 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 10 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 14 C 0.12 2.03 5.46 -4.98 -0.03 2.00 16 15 C 0.14 2.31 6.45 -80.18 -0.52 1.79 16 16 N -0.25 -3.91 11.81 34.84 0.41 -3.50 16 17 N -0.51 -6.61 7.37 32.36 0.24 -6.37 16 18 H 0.44 4.09 8.96 -182.77 -1.64 2.45 16 19 C 0.15 2.04 7.33 -84.18 -0.62 1.43 16 20 C -0.19 -2.23 10.05 -39.36 -0.40 -2.63 16 21 C 0.15 1.77 7.28 -39.39 -0.29 1.48 16 22 F -0.14 -1.65 17.25 2.25 0.04 -1.61 16 23 C -0.20 -2.36 9.94 -39.89 -0.40 -2.76 16 24 C 0.01 0.09 10.05 -39.60 -0.40 -0.31 16 25 C -0.17 -2.58 6.33 -105.19 -0.67 -3.25 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.54 6.17 -51.93 -0.32 1.22 16 30 H 0.05 0.88 6.31 -51.93 -0.33 0.55 16 31 H 0.06 1.04 6.97 -51.93 -0.36 0.68 16 32 H 0.08 1.71 6.81 -51.93 -0.35 1.35 16 33 H 0.03 0.78 7.83 -51.93 -0.41 0.37 16 34 H 0.00 0.06 5.99 -51.93 -0.31 -0.25 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.06 0.92 5.80 -51.93 -0.30 0.62 16 37 H 0.09 1.47 7.74 -51.93 -0.40 1.07 16 38 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -29.51 333.43 -9.65 -39.15 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.47 Total: 1.44 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -3.51 Total: -13.52 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.29 Total: -46.71 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.51 -9.65 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233123461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.495 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds