Wall clock time and date at job start Tue Mar 31 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47295 * 2 1 4 4 C 1.53001 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46719 * 179.97438 * 4 3 2 6 6 C 1.36944 * 119.99982 * 265.33385 * 5 4 3 7 7 H 1.08002 * 119.99720 * 149.35857 * 6 5 4 8 8 C 1.38811 * 119.99950 * 329.36147 * 6 5 4 9 9 N 1.31618 * 120.00038 * 332.59487 * 8 6 5 10 10 Si 1.86795 * 119.99900 * 152.59829 * 8 6 5 11 11 H 1.48501 * 109.47079 * 84.99875 * 10 8 6 12 12 H 1.48502 * 109.47191 * 204.99672 * 10 8 6 13 13 H 1.48503 * 109.47422 * 324.99955 * 10 8 6 14 14 C 1.46497 * 120.00089 * 85.33733 * 5 4 3 15 15 C 1.50697 * 109.47452 * 89.99576 * 14 5 4 16 16 N 1.30238 * 126.10300 * 90.02495 * 15 14 5 17 17 N 1.39863 * 110.08744 * 179.97438 * 16 15 14 18 18 H 0.97002 * 125.46561 * 180.02562 * 17 16 15 19 19 C 1.37054 * 109.07451 * 359.97438 * 17 16 15 20 20 C 1.39273 * 133.78977 * 180.02562 * 19 17 16 21 21 C 1.37792 * 119.72004 * 179.97438 * 20 19 17 22 22 F 1.35102 * 119.69658 * 179.97438 * 21 20 19 23 23 C 1.39206 * 120.61019 * 0.02562 * 21 20 19 24 24 C 1.36395 * 120.60992 * 0.02743 * 23 21 20 25 25 C 1.39949 * 119.81123 * 359.68792 * 24 23 21 26 26 H 1.09000 * 109.47048 * 300.00638 * 1 2 3 27 27 H 1.09007 * 109.46782 * 60.00025 * 1 2 3 28 28 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47554 * 239.99420 * 2 1 3 30 30 H 1.09001 * 109.46811 * 119.99509 * 2 1 3 31 31 H 1.08997 * 109.46885 * 59.99492 * 3 2 1 32 32 H 1.09001 * 109.46790 * 299.99522 * 3 2 1 33 33 H 1.08993 * 109.47487 * 299.99906 * 4 3 2 34 34 H 1.09003 * 109.46760 * 60.00427 * 4 3 2 35 35 H 0.96995 * 120.00066 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47046 * 210.00080 * 14 5 4 37 37 H 1.09006 * 109.47054 * 329.99573 * 14 5 4 38 38 H 1.08004 * 120.14026 * 359.97438 * 20 19 17 39 39 H 1.08004 * 119.69299 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.09483 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3781 3.4363 -1.1822 7 1 4.2575 4.5045 -1.2867 8 6 4.8571 2.6845 -2.2463 9 7 5.5040 1.5609 -2.0197 10 14 4.5836 3.2675 -3.9997 11 1 5.6562 4.2227 -4.3768 12 1 4.6132 2.1017 -4.9192 13 1 3.2639 3.9414 -4.0972 14 6 4.2048 3.5494 1.2641 15 6 5.5900 3.3263 1.8141 16 7 6.6397 4.0575 1.5697 17 7 7.7490 3.5489 2.2530 18 1 8.6442 3.9219 2.2293 19 6 7.3682 2.4399 2.9625 20 6 8.0407 1.5548 3.8016 21 6 7.3560 0.5085 4.3806 22 9 8.0090 -0.3501 5.1940 23 6 5.9980 0.3275 4.1343 24 6 5.3207 1.1821 3.3149 25 6 5.9935 2.2555 2.7203 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9330 0.9288 0.8908 34 1 3.9337 0.9285 -0.8892 35 1 5.8384 1.0354 -2.7632 36 1 4.0495 4.6144 1.0917 37 1 3.4670 3.1858 1.9794 38 1 9.0945 1.6878 3.9976 39 1 5.4760 -0.4979 4.5956 40 1 4.2672 1.0336 3.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233127403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:25 Heat of formation + Delta-G solvation = 45.186077 kcal Electronic energy + Delta-G solvation = -23242.769897 eV Core-core repulsion = 19780.405798 eV Total energy + Delta-G solvation = -3462.364099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.77573 -40.73406 -36.62441 -36.28413 -33.94204 -32.47946 -31.04906 -29.49053 -29.02112 -28.09755 -26.04103 -23.79097 -22.92207 -21.98727 -21.35671 -20.30101 -19.03856 -17.86976 -17.04025 -16.59369 -16.13963 -15.50312 -15.08489 -14.98407 -14.53979 -14.36103 -13.86231 -13.62256 -13.51918 -13.39034 -13.07015 -13.00853 -12.27717 -12.09546 -11.77334 -11.54563 -11.20175 -11.04918 -10.96087 -10.83505 -10.71517 -10.49407 -10.34581 -10.15565 -9.95134 -9.90365 -9.61989 -9.51793 -8.51168 -8.13794 -7.71283 -6.77746 -5.87120 -3.31630 1.13159 1.67625 3.00460 3.14168 3.35354 3.42801 3.46700 3.93918 4.46727 4.47287 4.82515 5.05430 5.12008 5.19071 5.25036 5.41856 5.49574 5.52112 5.69812 5.73456 5.89255 5.97742 6.09910 6.13952 6.25770 6.26464 6.35144 6.41435 6.48023 6.49855 6.59509 6.62348 6.85703 6.86396 6.92249 7.14029 7.24548 7.70919 7.71787 7.78807 8.26264 8.40299 9.10080 9.73319 10.26836 11.14204 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.005618 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.519042 B = 4983.039540 C = 6272.928822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.141 3.859 5 N -0.564 5.564 6 C -0.256 4.256 7 H 0.068 0.932 8 C 0.013 3.987 9 N -0.877 5.877 10 Si 0.894 3.106 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.208 3.792 15 C 0.115 3.885 16 N -0.244 5.244 17 N -0.518 5.518 18 H 0.432 0.568 19 C 0.151 3.849 20 C -0.190 4.190 21 C 0.138 3.862 22 F -0.142 7.142 23 C -0.205 4.205 24 C 0.000 4.000 25 C -0.171 4.171 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.023 0.977 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -2.071 10.699 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.173 4.173 4 C 0.016 3.984 5 N -0.282 5.282 6 C -0.386 4.386 7 H 0.086 0.914 8 C -0.189 4.189 9 N -0.518 5.518 10 Si 0.723 3.277 11 H -0.213 1.213 12 H -0.215 1.215 13 H -0.202 1.202 14 C 0.078 3.922 15 C -0.066 4.066 16 N -0.058 5.058 17 N -0.229 5.229 18 H 0.276 0.724 19 C 0.033 3.967 20 C -0.214 4.214 21 C 0.117 3.883 22 F -0.121 7.121 23 C -0.225 4.225 24 C -0.021 4.021 25 C -0.179 4.179 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.288 -1.162 9.947 10.097 hybrid contribution 0.717 -0.611 -0.466 1.051 sum -0.571 -1.773 9.481 9.662 Atomic orbital electron populations 1.21769 0.96945 1.00486 1.01369 1.21471 0.94676 0.98466 1.01381 1.22143 0.99860 0.94378 1.00936 1.21087 0.89533 0.85664 1.02163 1.44223 1.71612 1.12264 1.00107 1.19113 1.38216 0.93282 0.87980 0.91384 1.25025 0.96777 0.97951 0.99099 1.70095 1.34551 1.16538 1.30641 0.86452 0.78522 0.77826 0.84865 1.21273 1.21547 1.20241 1.19763 0.85466 0.98173 0.88751 1.25473 0.98585 0.90763 0.91815 1.76739 0.92731 1.21549 1.14796 1.46113 1.11250 1.23802 1.41742 0.72436 1.18400 0.94226 0.89919 0.94150 1.19668 1.00331 0.97319 1.04079 1.17244 0.90501 0.88738 0.91842 1.91468 1.81535 1.68600 1.70474 1.20468 0.92766 1.03743 1.05537 1.20181 0.99780 0.90474 0.91640 1.19991 0.92942 1.00393 1.04610 0.93233 0.93074 0.93681 0.92374 0.92813 0.93839 0.92274 0.95820 0.88384 0.93554 0.91477 0.91835 0.85153 0.84883 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.03 16 3 C -0.13 -2.41 5.54 -26.73 -0.15 -2.56 16 4 C 0.14 3.06 5.27 -4.04 -0.02 3.04 16 5 N -0.56 -13.02 2.46 -174.61 -0.43 -13.45 16 6 C -0.26 -6.68 9.48 -15.06 -0.14 -6.82 16 7 H 0.07 1.79 7.96 -52.49 -0.42 1.37 16 8 C 0.01 0.34 4.82 -17.43 -0.08 0.25 16 9 N -0.88 -24.67 11.44 55.49 0.64 -24.03 16 10 Si 0.89 21.17 29.63 -169.99 -5.04 16.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.21 4.13 6.28 -5.20 -0.03 4.10 16 15 C 0.12 2.36 7.02 -80.18 -0.56 1.80 16 16 N -0.24 -5.15 12.55 34.84 0.44 -4.71 16 17 N -0.52 -9.18 7.37 32.36 0.24 -8.94 16 18 H 0.43 6.11 8.96 -182.77 -1.64 4.47 16 19 C 0.15 2.66 7.33 -84.18 -0.62 2.04 16 20 C -0.19 -2.89 10.05 -39.36 -0.40 -3.29 16 21 C 0.14 2.06 7.28 -39.39 -0.29 1.77 16 22 F -0.14 -2.03 17.25 2.25 0.04 -1.99 16 23 C -0.20 -2.92 9.94 -39.89 -0.40 -3.32 16 24 C 0.00 0.00 9.72 -39.61 -0.39 -0.39 16 25 C -0.17 -3.17 6.33 -105.19 -0.67 -3.84 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.49 7.32 -51.93 -0.38 0.11 16 34 H 0.10 2.48 5.30 -51.93 -0.28 2.21 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 38 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.13 1.87 7.61 -52.49 -0.40 1.47 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -29.64 341.63 -9.38 -39.03 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.89 Total: 3.63 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -3.53 Total: -10.82 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.88 Total: -51.13 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.04 Total: 16.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.64 -9.38 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233127403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.214 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds