Wall clock time and date at job start Tue Mar 31 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47295 * 2 1 4 4 C 1.53001 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46719 * 179.97438 * 4 3 2 6 6 C 1.36944 * 119.99982 * 265.33385 * 5 4 3 7 7 H 1.08002 * 119.99720 * 149.35857 * 6 5 4 8 8 C 1.38811 * 119.99950 * 329.36147 * 6 5 4 9 9 N 1.31618 * 120.00038 * 332.59487 * 8 6 5 10 10 Si 1.86795 * 119.99900 * 152.59829 * 8 6 5 11 11 H 1.48501 * 109.47079 * 84.99875 * 10 8 6 12 12 H 1.48502 * 109.47191 * 204.99672 * 10 8 6 13 13 H 1.48503 * 109.47422 * 324.99955 * 10 8 6 14 14 C 1.46497 * 120.00089 * 85.33733 * 5 4 3 15 15 C 1.50697 * 109.47452 * 89.99576 * 14 5 4 16 16 N 1.30238 * 126.10300 * 90.02495 * 15 14 5 17 17 N 1.39863 * 110.08744 * 179.97438 * 16 15 14 18 18 H 0.97002 * 125.46561 * 180.02562 * 17 16 15 19 19 C 1.37054 * 109.07451 * 359.97438 * 17 16 15 20 20 C 1.39273 * 133.78977 * 180.02562 * 19 17 16 21 21 C 1.37792 * 119.72004 * 179.97438 * 20 19 17 22 22 F 1.35102 * 119.69658 * 179.97438 * 21 20 19 23 23 C 1.39206 * 120.61019 * 0.02562 * 21 20 19 24 24 C 1.36395 * 120.60992 * 0.02743 * 23 21 20 25 25 C 1.39949 * 119.81123 * 359.68792 * 24 23 21 26 26 H 1.09000 * 109.47048 * 300.00638 * 1 2 3 27 27 H 1.09007 * 109.46782 * 60.00025 * 1 2 3 28 28 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47554 * 239.99420 * 2 1 3 30 30 H 1.09001 * 109.46811 * 119.99509 * 2 1 3 31 31 H 1.08997 * 109.46885 * 59.99492 * 3 2 1 32 32 H 1.09001 * 109.46790 * 299.99522 * 3 2 1 33 33 H 1.08993 * 109.47487 * 299.99906 * 4 3 2 34 34 H 1.09003 * 109.46760 * 60.00427 * 4 3 2 35 35 H 0.96995 * 120.00066 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47046 * 210.00080 * 14 5 4 37 37 H 1.09006 * 109.47054 * 329.99573 * 14 5 4 38 38 H 1.08004 * 120.14026 * 359.97438 * 20 19 17 39 39 H 1.08004 * 119.69299 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.09483 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3781 3.4363 -1.1822 7 1 4.2575 4.5045 -1.2867 8 6 4.8571 2.6845 -2.2463 9 7 5.5040 1.5609 -2.0197 10 14 4.5836 3.2675 -3.9997 11 1 5.6562 4.2227 -4.3768 12 1 4.6132 2.1017 -4.9192 13 1 3.2639 3.9414 -4.0972 14 6 4.2048 3.5494 1.2641 15 6 5.5900 3.3263 1.8141 16 7 6.6397 4.0575 1.5697 17 7 7.7490 3.5489 2.2530 18 1 8.6442 3.9219 2.2293 19 6 7.3682 2.4399 2.9625 20 6 8.0407 1.5548 3.8016 21 6 7.3560 0.5085 4.3806 22 9 8.0090 -0.3501 5.1940 23 6 5.9980 0.3275 4.1343 24 6 5.3207 1.1821 3.3149 25 6 5.9935 2.2555 2.7203 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9330 0.9288 0.8908 34 1 3.9337 0.9285 -0.8892 35 1 5.8384 1.0354 -2.7632 36 1 4.0495 4.6144 1.0917 37 1 3.4670 3.1858 1.9794 38 1 9.0945 1.6878 3.9976 39 1 5.4760 -0.4979 4.5956 40 1 4.2672 1.0336 3.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233127403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:25 Heat of formation + Delta-G solvation = 29.697054 kcal Electronic energy + Delta-G solvation = -23243.441551 eV Core-core repulsion = 19780.405798 eV Total energy + Delta-G solvation = -3463.035754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93276 -42.09904 -38.15396 -37.70077 -35.32516 -34.11839 -32.70598 -30.82131 -30.33549 -29.53488 -27.78949 -25.38786 -24.17093 -23.32301 -22.86900 -21.70439 -20.57074 -19.17752 -18.62281 -18.15865 -17.38218 -16.86275 -16.65444 -16.22549 -16.11364 -15.81239 -15.34694 -15.21785 -15.01132 -14.75305 -14.28683 -14.24435 -13.62914 -13.57256 -13.21884 -13.07994 -12.79589 -12.58600 -12.46057 -12.43666 -12.12354 -12.07976 -11.75503 -11.70797 -11.50704 -11.42108 -11.14166 -11.02913 -10.46128 -9.45926 -9.02664 -8.65859 -7.85057 -5.32386 -0.13532 0.44410 1.43734 1.47326 1.53130 1.60135 1.82403 2.52867 2.67665 3.21788 3.28152 3.60729 3.71099 3.79420 3.82085 4.07942 4.29066 4.32651 4.42234 4.52415 4.57905 4.66856 4.75119 4.87625 4.93568 5.03107 5.08069 5.10780 5.13209 5.21281 5.24732 5.33503 5.42669 5.54426 5.58868 5.66647 5.75264 5.88501 5.97666 6.44223 6.45962 6.81137 7.17096 7.86751 8.34609 9.12478 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.005618 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.519042 B = 4983.039540 C = 6272.928822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.145 3.855 5 N -0.577 5.577 6 C -0.256 4.256 7 H 0.059 0.941 8 C -0.034 4.034 9 N -0.908 5.908 10 Si 0.947 3.053 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.270 1.270 14 C 0.209 3.791 15 C 0.101 3.899 16 N -0.280 5.280 17 N -0.514 5.514 18 H 0.444 0.556 19 C 0.137 3.863 20 C -0.190 4.190 21 C 0.140 3.860 22 F -0.136 7.136 23 C -0.193 4.193 24 C -0.006 4.006 25 C -0.197 4.197 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 -3.110 12.583 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.160 4.160 4 C 0.019 3.981 5 N -0.296 5.296 6 C -0.387 4.387 7 H 0.077 0.923 8 C -0.232 4.232 9 N -0.552 5.552 10 Si 0.775 3.225 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.195 1.195 14 C 0.080 3.920 15 C -0.080 4.080 16 N -0.095 5.095 17 N -0.228 5.228 18 H 0.290 0.710 19 C 0.020 3.980 20 C -0.213 4.213 21 C 0.118 3.882 22 F -0.114 7.114 23 C -0.213 4.213 24 C -0.026 4.026 25 C -0.205 4.205 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.148 -2.189 11.852 12.242 hybrid contribution 1.052 -0.297 -0.861 1.392 sum -1.096 -2.486 10.990 11.321 Atomic orbital electron populations 1.21718 0.94770 1.01815 1.01747 1.21436 0.96534 0.96368 1.01323 1.21965 0.97130 0.96283 1.00626 1.21002 0.91671 0.84770 1.00619 1.44292 1.72185 1.12700 1.00444 1.19249 1.36844 0.93004 0.89586 0.92290 1.25570 0.97377 0.98433 1.01808 1.70218 1.36423 1.17810 1.30767 0.85631 0.78361 0.76997 0.81500 1.21759 1.21923 1.19463 1.19817 0.86332 0.97721 0.88136 1.25452 0.98294 0.91621 0.92640 1.76599 0.93949 1.23133 1.15831 1.46007 1.11175 1.24053 1.41553 0.71003 1.18664 0.94328 0.90257 0.94796 1.19908 1.01549 0.96679 1.03143 1.17375 0.90872 0.88496 0.91463 1.91492 1.81471 1.68278 1.70176 1.20815 0.92542 1.03746 1.04200 1.20422 1.00781 0.89823 0.91577 1.20223 0.93804 1.01181 1.05299 0.91927 0.93648 0.91909 0.94013 0.91353 0.91989 0.94573 0.95086 0.92107 0.94321 0.91895 0.88655 0.82796 0.81714 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.12 -3.45 5.93 30.60 0.18 -3.27 16 3 C -0.12 -4.24 5.54 30.60 0.17 -4.07 16 4 C 0.14 6.27 5.27 86.38 0.46 6.73 16 5 N -0.58 -26.83 2.46 -706.34 -1.73 -28.57 16 6 C -0.26 -13.64 9.48 84.03 0.80 -12.84 16 7 H 0.06 3.18 7.96 -2.91 -0.02 3.15 16 8 C -0.03 -1.88 4.82 84.86 0.41 -1.47 16 9 N -0.91 -52.67 11.44 21.65 0.25 -52.42 16 10 Si 0.95 44.63 29.63 68.60 2.03 46.66 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 C 0.21 8.21 6.28 85.63 0.54 8.75 16 15 C 0.10 4.12 7.02 44.80 0.31 4.44 16 16 N -0.28 -11.97 12.55 -43.67 -0.55 -12.52 16 17 N -0.51 -18.15 7.37 -51.54 -0.38 -18.53 16 18 H 0.44 12.50 8.96 -213.47 -1.91 10.59 16 19 C 0.14 4.67 7.33 39.20 0.29 4.96 16 20 C -0.19 -5.33 10.05 22.41 0.23 -5.11 16 21 C 0.14 3.74 7.28 22.40 0.16 3.90 16 22 F -0.14 -3.42 17.25 44.97 0.78 -2.65 16 23 C -0.19 -4.85 9.94 22.07 0.22 -4.63 16 24 C -0.01 -0.17 9.72 22.25 0.22 0.05 16 25 C -0.20 -7.09 6.33 -20.24 -0.13 -7.22 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.03 1.26 7.32 -2.39 -0.02 1.24 16 34 H 0.06 3.16 5.30 -2.39 -0.01 3.15 16 35 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 37 H 0.10 3.06 8.07 -2.38 -0.02 3.04 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.15 3.77 7.61 -2.91 -0.02 3.75 16 Total: -1.00 -65.03 341.63 4.10 -60.93 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.86 Total: 19.52 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.56 Total: -12.43 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -2.41 Total: -112.04 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.03 4.10 -60.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233127403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.631 kcal (2) G-P(sol) polarization free energy of solvation -65.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds