Wall clock time and date at job start Tue Mar 31 2020 07:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 109.46980 * 2 1 4 4 C 1.46901 * 109.46886 * 239.99847 * 2 1 3 5 5 C 1.46898 * 109.46872 * 120.00028 * 2 1 3 6 6 C 1.52996 * 109.47364 * 62.30985 * 5 2 1 7 7 H 1.08999 * 109.47362 * 51.72696 * 6 5 2 8 8 C 1.50695 * 109.47234 * 171.73391 * 6 5 2 9 9 H 1.08006 * 119.99870 * 245.44442 * 8 6 5 10 10 C 1.37878 * 120.00589 * 65.44890 * 8 6 5 11 11 N 1.31516 * 119.99336 * 7.08640 * 10 8 6 12 12 Si 1.86799 * 120.00349 * 187.09257 * 10 8 6 13 13 H 1.48497 * 109.47049 * 179.97438 * 12 10 8 14 14 H 1.48504 * 109.46923 * 299.99551 * 12 10 8 15 15 H 1.48499 * 109.47414 * 59.99613 * 12 10 8 16 16 O 1.42904 * 109.46811 * 291.72782 * 6 5 2 17 17 C 1.35902 * 116.99935 * 156.56472 * 16 6 5 18 18 C 1.38763 * 119.95171 * 185.93062 * 17 16 6 19 19 C 1.38719 * 120.20056 * 179.97438 * 18 17 16 20 20 O 1.35906 * 119.94758 * 179.97438 * 19 18 17 21 21 C 1.38513 * 120.09890 * 0.02562 * 19 18 17 22 22 C 1.39556 * 119.90163 * 359.97438 * 21 19 18 23 23 C 1.43196 * 120.09969 * 179.97438 * 22 21 19 24 24 N 7.57080 * 85.57216 * 187.98706 * 2 1 3 25 25 C 1.38480 * 119.95382 * 5.65625 * 17 16 6 26 26 H 1.09000 * 109.47115 * 288.03866 * 1 2 3 27 27 H 1.08999 * 109.47237 * 48.03405 * 1 2 3 28 28 H 1.09003 * 109.47170 * 168.03718 * 1 2 3 29 29 H 1.09004 * 109.46803 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46892 * 300.00119 * 3 2 1 31 31 H 1.08998 * 109.46784 * 60.00101 * 3 2 1 32 32 H 1.08994 * 109.47182 * 300.00137 * 4 2 1 33 33 H 1.09001 * 109.46938 * 60.00299 * 4 2 1 34 34 H 1.09002 * 109.46513 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47478 * 302.30345 * 5 2 1 36 36 H 1.09009 * 109.46919 * 182.30312 * 5 2 1 37 37 H 0.96992 * 120.00365 * 355.21330 * 11 10 8 38 38 H 1.07995 * 119.89945 * 359.97438 * 18 17 16 39 39 H 0.96702 * 113.99529 * 90.01124 * 20 19 18 40 40 H 1.08006 * 120.05040 * 179.97438 * 21 19 18 41 41 H 1.08003 * 120.04825 * 0.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1994 5 6 1.9586 -0.6925 1.1994 6 6 1.4966 -2.1508 1.1707 7 1 1.7675 -2.5990 0.2148 8 6 2.1626 -2.9108 2.2886 9 1 2.8626 -3.7015 2.0620 10 6 1.8784 -2.5970 3.6008 11 7 0.9261 -1.7335 3.8788 12 14 2.8459 -3.3980 4.9834 13 1 2.3506 -2.8952 6.2900 14 1 2.6708 -4.8714 4.9210 15 1 4.2855 -3.0640 4.8385 16 8 0.0783 -2.2044 1.3372 17 6 -0.5571 -3.3085 0.8638 18 6 -1.9432 -3.3710 0.8811 19 6 -2.5972 -4.4952 0.3988 20 8 -3.9549 -4.5511 0.4186 21 6 -1.8684 -5.5613 -0.1022 22 6 -0.4742 -5.5030 -0.1216 23 6 0.2835 -6.6029 -0.6380 24 7 0.8845 -7.4750 -1.0488 25 6 0.1794 -4.3673 0.3597 26 1 -0.3633 0.3182 0.9771 27 1 -0.3634 0.6872 -0.7641 28 1 -0.3634 -1.0054 -0.2130 29 1 3.0487 1.3850 -0.0005 30 1 1.5952 1.8988 -0.8900 31 1 1.5953 1.8988 0.8900 32 1 1.5953 -1.7201 -1.1994 33 1 1.5953 -0.1787 -2.0894 34 1 3.0486 -0.6921 -1.1996 35 1 1.5619 -0.2031 2.0890 36 1 3.0479 -0.6569 1.2203 37 1 0.4710 -1.2657 3.1614 38 1 -2.5146 -2.5418 1.2714 39 1 -4.3745 -4.2062 -0.3814 40 1 -2.3783 -6.4365 -0.4772 41 1 1.2581 -4.3163 0.3428 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234143266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:51 Heat of formation + Delta-G solvation = 86.220500 kcal Electronic energy + Delta-G solvation = -24352.601126 eV Core-core repulsion = 20931.413795 eV Total energy + Delta-G solvation = -3421.187331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.70249 -41.20407 -39.42420 -38.00582 -36.58244 -34.97993 -32.25186 -31.28707 -30.73460 -30.56429 -30.21494 -27.84280 -25.28301 -25.05201 -23.97546 -22.35430 -20.80355 -19.73873 -18.90179 -18.63312 -18.38650 -18.02979 -17.70157 -17.17157 -17.07363 -16.09140 -15.64512 -15.26358 -15.18093 -14.97676 -14.77778 -14.67584 -14.41633 -14.36323 -14.26563 -14.06243 -14.04006 -13.93394 -13.92873 -13.55939 -13.10291 -12.89544 -12.83393 -12.08659 -12.01138 -11.91103 -11.69460 -11.31378 -10.53319 -10.10829 -9.78771 -9.11591 -8.08721 -6.11129 -0.23570 0.00235 0.30978 1.76810 1.90828 1.99536 2.01720 2.04905 2.18698 2.30053 2.35971 2.47368 2.81521 2.88049 2.92743 2.95705 3.07827 3.16485 3.25648 3.33104 3.39442 3.42339 3.50580 3.53973 3.58345 3.77073 3.84763 3.89743 4.01323 4.11094 4.13422 4.20310 4.46351 4.50994 4.73684 5.20812 5.25350 5.29422 5.49035 5.77474 6.40789 6.58333 6.62585 6.65473 7.04358 7.69501 9.24385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.274 5.274 3 C -0.043 4.043 4 C -0.047 4.047 5 C -0.003 4.003 6 C 0.172 3.828 7 H 0.057 0.943 8 C -0.640 4.640 9 H 0.075 0.925 10 C 0.053 3.947 11 N -0.855 5.855 12 Si 1.056 2.944 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.279 1.279 16 O -0.322 6.322 17 C 0.171 3.829 18 C -0.163 4.163 19 C 0.144 3.856 20 O -0.490 6.490 21 C -0.143 4.143 22 C 0.025 3.975 23 C 0.254 3.746 24 N -0.409 5.409 25 C -0.158 4.158 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.278 0.722 38 H 0.140 0.860 39 H 0.394 0.606 40 H 0.137 0.863 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 14.823 -13.776 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 N 0.067 4.933 3 C -0.185 4.185 4 C -0.189 4.189 5 C -0.122 4.122 6 C 0.118 3.882 7 H 0.075 0.925 8 C -0.676 4.676 9 H 0.093 0.907 10 C -0.161 4.161 11 N -0.487 5.487 12 Si 0.881 3.119 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.205 1.205 16 O -0.237 6.237 17 C 0.124 3.876 18 C -0.183 4.183 19 C 0.099 3.901 20 O -0.301 6.301 21 C -0.164 4.164 22 C 0.021 3.979 23 C -0.062 4.062 24 N -0.084 5.084 25 C -0.179 4.179 26 H 0.139 0.861 27 H 0.124 0.876 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.092 0.908 38 H 0.157 0.843 39 H 0.250 0.750 40 H 0.155 0.845 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.534 13.330 -12.125 18.028 hybrid contribution -0.295 0.410 -1.727 1.799 sum 0.239 13.740 -13.852 19.513 Atomic orbital electron populations 1.24284 0.76316 1.09226 1.08433 1.46441 1.15659 1.14747 1.16405 1.24070 1.05190 0.80770 1.08426 1.24106 1.05278 1.02421 0.87052 1.25012 1.04246 0.96683 0.86243 1.20625 0.77973 0.89636 0.99916 0.92510 1.22090 1.31300 1.22732 0.91521 0.90652 1.26003 0.94734 0.95371 0.99945 1.70990 1.17286 1.22925 1.37503 0.83619 0.75525 0.76885 0.75865 1.19795 1.20346 1.20466 1.86161 1.24570 1.37442 1.75503 1.18242 0.90640 0.87160 0.91539 1.20874 0.92075 0.99885 1.05483 1.17776 0.83193 0.91984 0.97167 1.84897 1.14919 1.85898 1.44367 1.21275 0.91971 1.00293 1.02887 1.15506 0.91141 0.89900 1.01318 1.25628 0.93567 0.93209 0.93821 1.81290 1.08380 1.09840 1.08855 1.21387 1.01363 0.92654 1.02505 0.86084 0.87598 0.85526 0.86578 0.86857 0.86415 0.86298 0.86759 0.86367 0.84875 0.84757 0.90811 0.84265 0.74960 0.84495 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.47 7.02 60.06 0.42 0.89 16 2 N -0.27 3.28 0.05 -395.62 -0.02 3.26 16 3 C -0.04 0.61 7.99 60.07 0.48 1.09 16 4 C -0.05 0.61 7.59 60.07 0.46 1.07 16 5 C 0.00 0.02 3.47 -3.83 -0.01 0.00 16 6 C 0.17 -0.21 1.38 -27.89 -0.04 -0.25 16 7 H 0.06 -0.20 4.09 -51.93 -0.21 -0.42 16 8 C -0.64 -3.51 7.78 -34.44 -0.27 -3.78 16 9 H 0.08 0.53 7.82 -52.48 -0.41 0.12 16 10 C 0.05 0.45 5.23 -17.82 -0.09 0.36 16 11 N -0.85 -7.94 13.05 55.43 0.72 -7.22 16 12 Si 1.06 8.84 29.91 -169.99 -5.08 3.75 16 13 H -0.27 -2.71 7.11 56.52 0.40 -2.31 16 14 H -0.28 -2.58 7.11 56.52 0.40 -2.17 16 15 H -0.28 -2.13 7.11 56.52 0.40 -1.73 16 16 O -0.32 0.11 4.85 -19.43 -0.09 0.01 16 17 C 0.17 0.08 6.05 -39.30 -0.24 -0.15 16 18 C -0.16 -0.01 9.91 -39.21 -0.39 -0.40 16 19 C 0.14 0.04 6.69 -39.30 -0.26 -0.23 16 20 O -0.49 0.22 13.50 -19.44 -0.26 -0.04 16 21 C -0.14 -0.10 9.69 -38.99 -0.38 -0.47 16 22 C 0.02 0.04 5.73 -106.98 -0.61 -0.57 16 23 C 0.25 0.92 15.33 -22.47 -0.34 0.58 16 24 N -0.41 -2.49 18.54 41.84 0.78 -1.71 16 25 C -0.16 -0.18 8.37 -38.99 -0.33 -0.50 16 26 H 0.12 -1.19 7.91 -51.93 -0.41 -1.60 16 27 H 0.11 -1.50 7.95 -51.93 -0.41 -1.91 16 28 H 0.13 -1.20 5.44 -51.93 -0.28 -1.48 16 29 H 0.12 -1.71 8.14 -51.93 -0.42 -2.13 16 30 H 0.11 -1.82 8.05 -51.93 -0.42 -2.24 16 31 H 0.12 -1.61 8.14 -51.93 -0.42 -2.03 16 32 H 0.12 -1.35 5.84 -51.93 -0.30 -1.65 16 33 H 0.11 -1.75 8.14 -51.93 -0.42 -2.17 16 34 H 0.12 -1.62 8.14 -51.93 -0.42 -2.04 16 35 H 0.13 -0.49 6.16 -51.93 -0.32 -0.82 16 36 H 0.13 -0.93 8.11 -51.92 -0.42 -1.35 16 37 H 0.28 1.79 4.67 -40.82 -0.19 1.60 16 38 H 0.14 -0.12 8.06 -52.49 -0.42 -0.55 16 39 H 0.39 -2.29 9.06 45.56 0.41 -1.88 16 40 H 0.14 -0.03 8.06 -52.48 -0.42 -0.45 16 41 H 0.15 0.18 5.63 -52.48 -0.30 -0.11 16 LS Contribution 332.88 15.07 5.02 5.02 Total: 0.00 -21.47 332.88 -5.15 -26.62 By element: Atomic # 1 Polarization: -22.72 SS G_CDS: -4.60 Total: -27.32 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.61 Total: -2.37 kcal Atomic # 7 Polarization: -7.15 SS G_CDS: 1.48 Total: -5.67 kcal Atomic # 8 Polarization: 0.33 SS G_CDS: -0.36 Total: -0.03 kcal Atomic # 14 Polarization: 8.84 SS G_CDS: -5.08 Total: 3.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -21.47 -5.15 -26.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234143266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.837 kcal (2) G-P(sol) polarization free energy of solvation -21.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds