Wall clock time and date at job start Tue Mar 31 2020 07:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00229 * 2 1 4 4 C 1.53115 * 109.52503 * 174.99875 * 3 2 1 5 5 C 1.53035 * 109.27961 * 177.55708 * 4 3 2 6 6 N 1.46846 * 109.51762 * 300.82523 * 5 4 3 7 7 C 1.46901 * 111.00131 * 185.83154 * 6 5 4 8 8 C 1.50702 * 109.46753 * 164.70850 * 7 6 5 9 9 C 1.37634 * 120.12850 * 104.16884 * 8 7 6 10 10 C 1.38611 * 120.24967 * 179.73949 * 9 8 7 11 11 C 1.38657 * 120.49903 * 0.51232 * 10 9 8 12 12 C 1.37603 * 120.24963 * 359.76349 * 11 10 9 13 13 C 1.40699 * 120.12488 * 284.43854 * 8 7 6 14 14 C 1.41398 * 120.24795 * 0.02562 * 13 8 7 15 15 H 1.07999 * 119.99820 * 330.62596 * 14 13 8 16 16 C 1.39945 * 119.99954 * 150.61982 * 14 13 8 17 17 N 1.30825 * 120.00080 * 348.82317 * 16 14 13 18 18 Si 1.86797 * 119.99884 * 168.82026 * 16 14 13 19 19 H 1.48494 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47169 * 120.00453 * 18 16 14 21 21 H 1.48505 * 109.46903 * 240.00300 * 18 16 14 22 22 C 1.46831 * 111.20678 * 61.74465 * 6 5 4 23 23 C 1.53033 * 109.51766 * 298.25583 * 22 6 5 24 24 H 1.08992 * 109.47237 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46946 * 300.00442 * 1 2 3 26 26 H 1.09003 * 109.46921 * 59.99920 * 1 2 3 27 27 H 1.09003 * 109.57544 * 54.84148 * 3 2 1 28 28 H 1.09000 * 109.50581 * 57.61855 * 4 3 2 29 29 H 1.08999 * 109.53801 * 297.52143 * 4 3 2 30 30 H 1.08998 * 109.46062 * 60.84116 * 5 4 3 31 31 H 1.09001 * 109.46302 * 180.81532 * 5 4 3 32 32 H 1.08995 * 109.47271 * 284.70898 * 7 6 5 33 33 H 1.09001 * 109.46686 * 44.70694 * 7 6 5 34 34 H 1.08002 * 119.87271 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.74931 * 180.25104 * 10 9 8 36 36 H 1.08001 * 119.87550 * 179.74447 * 11 10 9 37 37 H 1.07999 * 120.12379 * 180.02562 * 12 11 10 38 38 H 0.96997 * 120.00283 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46355 * 178.23265 * 22 6 5 40 40 H 1.09007 * 109.45038 * 58.26318 * 22 6 5 41 41 H 1.08997 * 109.50160 * 299.22854 * 23 22 6 42 42 H 1.09009 * 109.49896 * 179.12256 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7380 1.9427 0.1258 5 6 4.0813 3.4327 0.0639 6 7 3.6097 3.9924 -1.2091 7 6 4.0432 5.3874 -1.3637 8 6 3.8791 5.8080 -2.8015 9 6 2.8330 6.6243 -3.1674 10 6 2.6827 7.0170 -4.4882 11 6 3.5759 6.5851 -5.4568 12 6 4.6259 5.7640 -5.1148 13 6 4.7913 5.3632 -3.7759 14 6 5.8662 4.5193 -3.4129 15 1 6.2889 4.5797 -2.4208 16 6 6.3822 3.6057 -4.3389 17 7 5.7418 3.3742 -5.4559 18 14 7.9856 2.7170 -3.9801 19 1 8.5078 3.1518 -2.6597 20 1 7.7453 1.2517 -3.9588 21 1 8.9780 3.0406 -5.0364 22 6 2.1510 3.8784 -1.3316 23 6 1.7501 2.4016 -1.3113 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7280 2.2564 0.8397 28 1 4.2338 1.4207 -0.6926 29 1 4.0748 1.5308 1.0771 30 1 3.5964 3.9517 0.8907 31 1 5.1613 3.5600 0.1387 32 1 3.4359 6.0294 -0.7257 33 1 5.0909 5.4762 -1.0764 34 1 2.1288 6.9631 -2.4219 35 1 1.8613 7.6609 -4.7656 36 1 3.4469 6.8940 -6.4836 37 1 5.3206 5.4291 -5.8708 38 1 6.0996 2.7413 -6.0979 39 1 1.8289 4.3294 -2.2701 40 1 1.6753 4.3953 -0.4981 41 1 2.2145 1.8869 -2.1524 42 1 0.6658 2.3179 -1.3865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:23 Heat of formation + Delta-G solvation = 11.482186 kcal Electronic energy + Delta-G solvation = -21567.237706 eV Core-core repulsion = 18637.332522 eV Total energy + Delta-G solvation = -2929.905185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.79539 -37.27395 -33.54414 -33.42573 -30.75548 -29.96238 -29.29314 -28.85639 -25.86902 -24.79803 -22.80516 -22.46722 -20.86633 -19.59398 -19.36869 -17.06414 -16.47570 -15.42769 -15.25473 -14.66900 -14.53881 -14.27406 -14.04909 -13.78416 -13.69632 -13.38675 -13.17499 -13.11586 -12.53568 -12.41006 -11.94368 -11.67097 -11.50246 -11.21312 -11.12274 -11.03923 -10.89600 -10.82413 -10.60344 -10.41266 -10.29900 -10.19167 -9.64501 -9.45270 -9.19412 -9.10816 -7.67700 -7.54875 -7.30602 -7.22252 -6.59381 -4.21343 1.72886 2.61842 2.84312 3.00067 3.15619 3.19431 3.30134 4.04261 4.51871 4.79071 4.85315 4.89474 5.05303 5.08666 5.27971 5.46613 5.60136 5.61516 5.70326 5.76917 5.79509 5.90358 5.92939 6.06920 6.13752 6.26626 6.29196 6.38676 6.40790 6.50029 6.56857 6.60596 6.84223 7.20209 7.32053 7.45064 7.69260 7.71918 7.79611 7.99879 8.13456 8.16788 8.40774 8.73692 9.02773 9.08028 10.35734 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.005837 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.232101 B = 4795.685596 C = 5931.210238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.273 6.273 3 C -0.043 4.043 4 C -0.095 4.095 5 C 0.064 3.936 6 N -0.512 5.512 7 C 0.130 3.870 8 C -0.191 4.191 9 C -0.090 4.090 10 C -0.244 4.244 11 C -0.108 4.108 12 C -0.160 4.160 13 C 0.132 3.868 14 C -0.433 4.433 15 H 0.075 0.925 16 C 0.077 3.923 17 N -0.802 5.802 18 Si 0.903 3.097 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.066 3.934 23 C -0.109 4.109 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.276 0.724 39 H 0.086 0.914 40 H 0.018 0.982 41 H 0.087 0.913 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -3.264 9.231 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.044 6.044 3 C -0.172 4.172 4 C -0.134 4.134 5 C -0.066 4.066 6 N -0.236 5.236 7 C 0.004 3.996 8 C -0.193 4.193 9 C -0.109 4.109 10 C -0.264 4.264 11 C -0.126 4.126 12 C -0.179 4.179 13 C 0.129 3.871 14 C -0.463 4.463 15 H 0.093 0.907 16 C -0.139 4.139 17 N -0.428 5.428 18 Si 0.728 3.272 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.064 4.064 23 C -0.148 4.148 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.036 0.964 41 H 0.105 0.895 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.083 -4.634 8.687 11.080 hybrid contribution -0.707 0.912 0.646 1.322 sum -5.789 -3.721 9.332 11.596 Atomic orbital electron populations 1.23341 0.94793 1.06005 1.04767 1.86825 1.06818 1.12807 1.97930 1.23256 1.00746 0.92105 1.01072 1.21409 0.91944 0.97261 1.02775 1.22022 1.00608 0.93494 0.90515 1.61826 1.10493 1.19907 1.31379 1.20570 0.99023 0.85731 0.94272 1.19439 0.98728 1.06621 0.94515 1.20352 0.96843 0.98692 0.94969 1.20287 1.03061 1.09270 0.93744 1.20685 0.96395 0.98826 0.96717 1.21365 0.99233 0.99605 0.97722 1.17362 0.90315 0.88844 0.90566 1.19424 1.12893 1.15432 0.98571 0.90673 1.25799 0.97450 0.96449 0.94228 1.69807 1.36018 1.28862 1.08132 0.86350 0.82021 0.79391 0.79437 1.18629 1.20106 1.20158 1.21989 0.88588 0.94774 1.01049 1.21902 0.99621 0.96625 0.96683 0.88496 0.90922 0.90390 0.90359 0.89790 0.91331 0.96023 0.90294 0.96812 0.91176 0.90084 0.89925 0.89774 0.86521 0.91325 0.89613 0.96438 0.89455 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.47 101.05 1.06 -0.15 16 2 S -0.27 -3.67 21.80 -107.50 -2.34 -6.02 16 3 C -0.04 -0.59 2.72 -26.61 -0.07 -0.67 16 4 C -0.09 -1.38 5.39 -26.65 -0.14 -1.53 16 5 C 0.06 0.99 5.45 -3.84 -0.02 0.97 16 6 N -0.51 -9.50 4.54 -236.13 -1.07 -10.58 16 7 C 0.13 2.57 4.45 -4.97 -0.02 2.54 16 8 C -0.19 -4.38 4.71 -103.91 -0.49 -4.87 16 9 C -0.09 -1.96 8.93 -39.66 -0.35 -2.32 16 10 C -0.24 -5.45 10.05 -39.29 -0.39 -5.85 16 11 C -0.11 -2.54 10.02 -39.66 -0.40 -2.93 16 12 C -0.16 -4.12 8.65 -38.87 -0.34 -4.46 16 13 C 0.13 3.38 5.54 -106.82 -0.59 2.78 16 14 C -0.43 -11.02 8.36 -37.74 -0.32 -11.34 16 15 H 0.08 1.86 6.64 -52.49 -0.35 1.51 16 16 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16 17 N -0.80 -20.83 10.91 55.55 0.61 -20.22 16 18 Si 0.90 18.99 29.57 -169.99 -5.03 13.96 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 C 0.07 1.12 5.30 -3.84 -0.02 1.10 16 23 C -0.11 -1.66 5.26 -26.66 -0.14 -1.80 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.08 0.77 7.23 -51.92 -0.38 0.40 16 27 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.22 7.96 -51.93 -0.41 0.81 16 32 H 0.01 0.25 7.88 -51.93 -0.41 -0.16 16 33 H 0.07 1.39 6.73 -51.93 -0.35 1.04 16 34 H 0.08 1.58 8.00 -52.49 -0.42 1.16 16 35 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 3.13 6.29 -52.49 -0.33 2.80 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.09 1.65 6.74 -51.93 -0.35 1.30 16 40 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.06 0.78 7.06 -51.92 -0.37 0.41 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -26.71 342.77 -11.73 -38.43 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.72 Total: 5.93 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -2.33 Total: -26.68 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: -0.47 Total: -30.80 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.34 Total: -6.02 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.71 -11.73 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.917 kcal (2) G-P(sol) polarization free energy of solvation -26.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds